Wall clock time and date at job start Tue Mar 31 2020 11:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 5 5 C 1.50706 * 109.46573 * 299.99925 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 14 14 N 1.46500 * 109.47373 * 60.00098 * 13 2 1 15 15 C 1.34767 * 119.99818 * 179.97438 * 14 13 2 16 16 O 1.21587 * 120.00589 * 0.02562 * 15 14 13 17 17 N 1.34787 * 120.00011 * 179.97438 * 15 14 13 18 18 C 1.45581 * 117.21501 * 0.02562 * 17 15 14 19 19 C 1.53255 * 108.84141 * 153.73704 * 18 17 15 20 20 C 1.52723 * 107.81786 * 57.65611 * 19 18 17 21 21 C 1.51356 * 111.42600 * 294.52823 * 20 19 18 22 22 H 1.09001 * 109.20771 * 275.12279 * 21 20 19 23 23 C 1.54322 * 109.70616 * 155.55282 * 21 20 19 24 24 O 1.43653 * 106.05868 * 255.41040 * 23 21 20 25 25 C 1.43642 * 107.64520 * 328.14302 * 24 23 21 26 26 C 1.43758 * 117.22079 * 179.74226 * 17 15 14 27 27 H 1.09002 * 108.06983 * 301.07151 * 26 17 15 28 28 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 30 30 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 33 33 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 34 34 H 1.09000 * 109.47486 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47362 * 59.99268 * 4 2 1 36 36 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46866 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.47261 * 299.99767 * 13 2 1 39 39 H 0.97003 * 119.99531 * 0.02562 * 14 13 2 40 40 H 1.09000 * 109.57651 * 273.54390 * 18 17 15 41 41 H 1.08998 * 109.58005 * 33.92619 * 18 17 15 42 42 H 1.09000 * 109.78698 * 177.23663 * 19 18 17 43 43 H 1.08997 * 109.78787 * 298.07843 * 19 18 17 44 44 H 1.09003 * 109.08745 * 55.02932 * 20 19 18 45 45 H 1.09002 * 109.08829 * 174.08928 * 20 19 18 46 46 H 1.08991 * 110.13870 * 14.56065 * 23 21 20 47 47 H 1.09000 * 110.13276 * 136.20081 * 23 21 20 48 48 H 1.09004 * 110.10758 * 150.26797 * 25 24 23 49 49 H 1.09003 * 110.10899 * 271.83803 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9205 0.8698 2.3806 7 6 1.8703 -0.4823 3.7319 8 7 2.6264 -1.5516 3.8525 9 14 1.2471 0.3979 5.2571 10 1 0.4227 1.5650 4.8530 11 1 0.4218 -0.5357 6.0649 12 1 2.4018 0.8644 6.0660 13 6 2.0399 -0.7212 -1.2493 14 7 1.5516 -0.0306 -2.4455 15 6 1.8777 -0.4908 -3.6695 16 8 2.5766 -1.4793 -3.7812 17 7 1.4280 0.1443 -4.7701 18 6 0.5953 1.3210 -4.5663 19 6 0.7308 2.2403 -5.7850 20 6 0.3224 1.4412 -7.0208 21 6 1.2837 0.3024 -7.2854 22 1 2.1305 0.6746 -7.8621 23 6 0.5705 -0.8041 -8.0907 24 8 0.2997 -1.8626 -7.1580 25 6 1.3528 -1.8620 -6.1811 26 6 1.8166 -0.3943 -6.0450 27 1 2.9055 -0.3918 -6.0954 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 2.8608 -1.8830 4.7335 37 1 3.1300 -0.7216 -1.2491 38 1 1.6767 -1.7489 -1.2494 39 1 0.9943 0.7583 -2.3564 40 1 -0.4451 1.0168 -4.4521 41 1 0.9233 1.8500 -3.6715 42 1 0.0754 3.1037 -5.6705 43 1 1.7645 2.5712 -5.8845 44 1 -0.6777 1.0354 -6.8684 45 1 0.3098 2.1042 -7.8858 46 1 -0.3620 -0.4233 -8.5071 47 1 1.2187 -1.1635 -8.8898 48 1 0.9774 -2.2274 -5.2252 49 1 2.1799 -2.4851 -6.5213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590941587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:51 Heat of formation + Delta-G solvation = -102.891853 kcal Electronic energy + Delta-G solvation = -27245.135731 eV Core-core repulsion = 23591.931558 eV Total energy + Delta-G solvation = -3653.204173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27407 -40.36949 -38.73778 -37.56563 -35.34742 -34.51145 -33.85688 -32.37012 -29.66452 -28.96596 -27.96380 -27.49345 -26.52217 -25.00059 -23.87808 -23.51978 -21.73711 -20.37330 -19.62349 -18.86465 -18.35025 -17.96728 -17.51621 -16.79858 -16.67931 -16.41716 -16.08055 -15.62211 -15.55993 -15.11855 -14.97418 -14.55037 -14.50526 -14.39151 -13.94091 -13.93662 -13.74542 -13.50036 -13.29652 -12.89705 -12.81675 -12.68994 -12.58386 -12.34671 -12.25338 -12.22077 -11.96778 -11.84320 -11.70109 -11.54093 -11.51960 -11.17749 -10.95936 -10.83350 -10.64670 -10.51425 -10.19819 -9.52622 -8.13150 -6.20929 1.42542 1.43486 1.54933 1.57549 2.04834 2.44861 2.89138 2.91974 3.21569 3.36916 3.68929 3.75676 3.89000 3.93113 3.98116 4.09012 4.17050 4.21495 4.27230 4.40131 4.50751 4.64859 4.67024 4.70194 4.72917 4.74436 4.76249 4.83631 4.85367 4.96008 4.98017 5.09866 5.12363 5.12696 5.16023 5.37623 5.38437 5.48121 5.50602 5.53855 5.58581 5.67871 5.75085 5.80908 5.90888 5.95627 6.31497 6.90353 6.95126 7.46822 7.49702 8.99719 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.002836 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.034850 B = 9871.432589 C =10351.522314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.119 4.119 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.160 3.840 14 N -0.722 5.722 15 C 0.689 3.311 16 O -0.631 6.631 17 N -0.606 5.606 18 C 0.097 3.903 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.113 4.113 22 H 0.111 0.889 23 C 0.047 3.953 24 O -0.400 6.400 25 C 0.047 3.953 26 C 0.146 3.854 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.057 0.943 34 H -0.014 1.014 35 H -0.015 1.015 36 H 0.259 0.741 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.409 0.591 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 11.788 -25.483 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.003 3.997 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.179 1.179 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.035 3.965 14 N -0.380 5.380 15 C 0.390 3.610 16 O -0.512 6.512 17 N -0.342 5.342 18 C -0.025 4.025 19 C -0.159 4.159 20 C -0.147 4.147 21 C -0.132 4.132 22 H 0.129 0.871 23 C -0.029 4.029 24 O -0.319 6.319 25 C -0.031 4.031 26 C 0.041 3.959 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.004 0.996 35 H 0.003 0.997 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.117 0.883 46 H 0.127 0.873 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.164 10.877 -25.492 28.393 hybrid contribution 0.293 -0.205 1.500 1.542 sum -5.871 10.673 -23.992 26.907 Atomic orbital electron populations 1.21678 0.93596 1.00894 1.01561 1.20714 0.96699 0.96411 0.92627 1.21675 0.99933 0.94475 1.01588 1.18966 0.94294 0.94178 0.92293 1.21621 1.30430 1.11905 0.90963 0.90761 1.25960 0.95682 0.95886 1.02767 1.70133 1.38854 1.25072 1.24011 0.85485 0.78034 0.78843 0.79212 1.17869 1.21164 1.21106 1.21077 0.97515 0.94939 0.82948 1.45240 1.56061 1.33258 1.03479 1.16255 0.80420 0.82785 0.81555 1.90886 1.44658 1.29240 1.86458 1.46161 1.54179 1.30421 1.03482 1.21809 0.94669 0.85326 1.00712 1.21763 1.03518 0.97997 0.92672 1.21197 0.98111 0.95829 0.99531 1.21918 1.00768 0.97087 0.93437 0.87082 1.23711 1.01667 0.85786 0.91785 1.88665 1.47500 1.54619 1.41130 1.23718 0.90320 0.97052 0.92029 1.20868 0.99136 0.92323 0.83603 0.91594 0.92321 0.91451 0.94598 0.94402 0.91373 0.92360 0.99555 0.99673 0.93208 0.93787 0.94047 0.75156 0.91079 0.89692 0.87331 0.90952 0.91614 0.88310 0.87288 0.90858 0.91728 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 2 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 3 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.28 7.65 25.60 0.20 -27.09 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 8 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 9 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.16 5.90 4.56 86.38 0.39 6.30 16 14 N -0.72 -21.01 4.77 -478.53 -2.28 -23.29 16 15 C 0.69 21.57 7.49 179.05 1.34 22.91 16 16 O -0.63 -25.19 14.57 -3.99 -0.06 -25.25 16 17 N -0.61 -13.85 2.97 -822.87 -2.45 -16.30 16 18 C 0.10 1.43 5.70 86.64 0.49 1.92 16 19 C -0.12 -1.08 6.09 30.59 0.19 -0.90 16 20 C -0.11 -0.94 5.12 29.96 0.15 -0.79 16 21 C -0.11 -1.44 3.11 -11.24 -0.03 -1.47 16 22 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 23 C 0.05 0.66 7.20 72.43 0.52 1.18 16 24 O -0.40 -9.70 11.50 -148.98 -1.71 -11.41 16 25 C 0.05 1.23 6.52 72.50 0.47 1.71 16 26 C 0.15 3.14 2.83 45.66 0.13 3.27 16 27 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 28 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 29 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 33 H 0.06 2.05 6.61 -2.39 -0.02 2.03 16 34 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H -0.02 -0.87 8.14 -2.39 -0.02 -0.88 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.41 9.30 3.72 -92.71 -0.34 8.95 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.12 6.31 -2.39 -0.02 1.11 16 42 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.67 7.74 -2.39 -0.02 0.66 16 45 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.11 1.12 7.60 -2.39 -0.02 1.10 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 2.13 6.57 -2.38 -0.02 2.12 16 49 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.03 367.19 1.96 -71.07 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.59 Total: 16.70 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.57 Total: 0.05 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -4.44 Total: -96.67 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.77 Total: -36.66 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -73.03 1.96 -71.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590941587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.824 kcal (2) G-P(sol) polarization free energy of solvation -73.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds