Wall clock time and date at job start Tue Mar 31 2020 10:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46889 * 2 1 4 4 C 1.53002 * 109.46856 * 240.00565 * 2 1 3 5 5 C 1.52990 * 109.47460 * 120.00384 * 2 1 3 6 6 C 1.53003 * 109.47383 * 59.99919 * 5 2 1 7 7 H 1.09002 * 115.54973 * 29.41636 * 6 5 2 8 8 C 1.53005 * 117.49874 * 243.74600 * 6 5 2 9 9 C 1.52999 * 59.99973 * 252.48565 * 8 6 5 10 10 H 1.08995 * 117.49529 * 107.48826 * 9 8 6 11 11 N 1.46496 * 117.49799 * 252.51088 * 9 8 6 12 12 C 1.34778 * 119.99668 * 223.62248 * 11 9 8 13 13 O 1.21584 * 120.00408 * 0.02562 * 12 11 9 14 14 N 1.34783 * 119.99973 * 179.97438 * 12 11 9 15 15 C 1.47026 * 125.64509 * 0.02927 * 14 12 11 16 16 C 1.54324 * 107.27048 * 181.01813 * 15 14 12 17 17 C 1.55160 * 102.94141 * 22.19161 * 16 15 14 18 18 O 1.42903 * 111.00327 * 82.56850 * 17 16 15 19 19 C 1.50696 * 111.00740 * 206.42286 * 17 16 15 20 20 H 1.08005 * 119.99591 * 0.02562 * 19 17 16 21 21 C 1.37875 * 120.00462 * 180.02562 * 19 17 16 22 22 N 1.31517 * 119.99561 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00470 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47178 * 59.99649 * 23 21 19 25 25 H 1.48497 * 109.47171 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46805 * 299.99824 * 23 21 19 27 27 C 1.47425 * 125.64981 * 179.71334 * 14 12 11 28 28 H 1.09004 * 109.46934 * 299.99010 * 1 2 3 29 29 H 1.08999 * 109.47916 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46891 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47374 * 300.00389 * 3 2 1 33 33 H 1.08996 * 109.47147 * 60.00198 * 3 2 1 34 34 H 1.09008 * 109.47218 * 299.99551 * 4 2 1 35 35 H 1.08999 * 109.47153 * 59.99171 * 4 2 1 36 36 H 1.09000 * 109.46962 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47451 * 299.99711 * 5 2 1 38 38 H 1.09000 * 109.47146 * 180.02562 * 5 2 1 39 39 H 1.09004 * 117.49602 * 359.97438 * 8 6 5 40 40 H 1.09004 * 117.49360 * 144.99617 * 8 6 5 41 41 H 0.96997 * 120.00536 * 43.62293 * 11 9 8 42 42 H 1.08996 * 109.88365 * 300.43878 * 15 14 12 43 43 H 1.09003 * 109.88340 * 61.44719 * 15 14 12 44 44 H 1.08997 * 110.72185 * 140.55322 * 16 15 14 45 45 H 1.09004 * 110.72263 * 263.65571 * 16 15 14 46 46 H 0.96700 * 114.00077 * 179.97438 * 18 17 16 47 47 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.37050 * 274.75358 * 27 14 12 49 49 H 1.09000 * 110.36008 * 37.07941 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 6 1.5301 -2.1638 1.2491 7 1 1.3639 -2.6037 0.2657 8 6 0.5839 -2.5786 2.3777 9 6 2.0262 -3.0890 2.3621 10 1 2.7161 -2.6701 3.0946 11 7 2.2414 -4.4982 2.0246 12 6 3.1129 -5.2369 2.7398 13 8 3.7200 -4.7339 3.6653 14 7 3.3106 -6.5335 2.4296 15 6 2.6458 -7.2652 1.3413 16 6 3.1631 -8.7185 1.3835 17 6 3.6633 -8.8671 2.8447 18 8 2.5816 -9.1697 3.7281 19 6 4.7454 -9.9114 2.9417 20 1 5.0684 -10.4383 2.0559 21 6 5.3232 -10.1943 4.1612 22 7 4.9303 -9.5523 5.2397 23 14 6.6651 -11.4883 4.2813 24 1 7.8116 -11.0935 3.4240 25 1 7.1179 -11.6024 5.6910 26 1 6.1329 -12.7971 3.8243 27 6 4.2339 -7.4513 3.1213 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 1.6768 -0.2075 2.1392 38 1 3.1301 -0.7208 1.2493 39 1 0.3251 -1.8239 3.1203 40 1 -0.2048 -3.2914 2.1366 41 1 1.7568 -4.8997 1.2865 42 1 1.5662 -7.2514 1.4906 43 1 2.8931 -6.8089 0.3827 44 1 2.3555 -9.4214 1.1790 45 1 3.9815 -8.8573 0.6769 46 1 2.8457 -9.2722 4.6527 47 1 5.3371 -9.7511 6.0975 48 1 5.2395 -7.3583 2.7111 49 1 4.2397 -7.2477 4.1921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593445172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:52 Heat of formation + Delta-G solvation = -72.076569 kcal Electronic energy + Delta-G solvation = -26380.011330 eV Core-core repulsion = 22728.143408 eV Total energy + Delta-G solvation = -3651.867922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.84995 -38.81462 -37.36193 -36.10237 -34.24088 -32.46902 -32.13397 -29.92459 -27.86395 -27.61096 -27.48923 -27.32739 -25.07507 -22.90233 -21.70535 -21.03699 -19.72307 -19.57944 -18.74366 -17.55307 -17.05931 -16.39000 -15.17285 -15.09895 -14.90148 -14.84623 -14.70350 -14.30823 -14.12791 -13.56299 -13.37060 -13.30944 -12.98424 -12.80428 -12.51496 -12.34939 -12.08638 -11.97306 -11.87914 -11.73281 -11.61116 -11.56374 -11.27918 -11.02390 -10.96798 -10.80772 -10.70029 -10.63161 -10.58842 -10.49580 -10.17235 -10.03360 -9.62074 -9.38700 -8.67501 -8.52722 -8.34200 -7.66317 -6.27918 -4.37651 3.04505 3.22880 3.28467 3.30151 3.52710 4.01851 4.24767 4.34139 4.51808 4.56114 4.63174 4.85737 4.94431 4.98895 5.03640 5.18383 5.34309 5.38006 5.41618 5.41892 5.55418 5.60496 5.63908 5.64699 5.69833 5.74242 5.78370 5.80855 5.87223 5.92419 6.03193 6.03863 6.10641 6.15482 6.15889 6.24646 6.51527 6.71311 6.81859 6.88148 6.97399 7.24027 7.33630 7.64068 7.75541 8.01375 8.53164 8.66146 9.13531 9.32067 9.47732 10.79307 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002529 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.543804 B =11070.418074 C =11147.396184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.077 4.077 6 C -0.162 4.162 7 H 0.107 0.893 8 C -0.194 4.194 9 C 0.112 3.888 10 H 0.135 0.865 11 N -0.722 5.722 12 C 0.719 3.281 13 O -0.596 6.596 14 N -0.626 5.626 15 C 0.106 3.894 16 C -0.116 4.116 17 C 0.250 3.750 18 O -0.584 6.584 19 C -0.538 4.538 20 H 0.067 0.933 21 C 0.071 3.929 22 N -0.894 5.894 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.111 3.889 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.393 0.607 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.386 0.614 47 H 0.272 0.728 48 H 0.057 0.943 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 16.268 -11.054 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.115 4.115 6 C -0.181 4.181 7 H 0.125 0.875 8 C -0.233 4.233 9 C 0.005 3.995 10 H 0.153 0.847 11 N -0.375 5.375 12 C 0.421 3.579 13 O -0.475 6.475 14 N -0.363 5.363 15 C -0.018 4.018 16 C -0.154 4.154 17 C 0.209 3.791 18 O -0.394 6.394 19 C -0.577 4.577 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.533 5.533 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.011 4.011 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.227 0.773 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.238 0.762 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.013 16.718 -10.676 21.394 hybrid contribution 0.718 -0.868 0.221 1.148 sum -7.295 15.850 -10.455 20.341 Atomic orbital electron populations 1.21863 0.94526 1.02026 1.01221 1.20516 0.95765 0.95126 0.95308 1.21875 1.01021 0.95460 1.01573 1.21940 1.01079 1.00382 0.96669 1.21225 1.00505 0.92336 0.97388 1.22945 1.04000 0.96095 0.95082 0.87469 1.23633 0.94488 1.03778 1.01369 1.21448 0.96884 0.80838 1.00377 0.84742 1.44508 1.46456 1.09891 1.36663 1.15465 0.80044 0.80309 0.82040 1.90873 1.53140 1.71263 1.32192 1.47900 1.45424 1.07897 1.35065 1.21926 0.96574 0.94144 0.89161 1.22595 1.00799 0.93037 0.98989 1.19620 0.84885 0.89438 0.85171 1.86057 1.36551 1.93362 1.23470 1.21455 1.19982 1.21527 0.94708 0.91524 1.25089 0.96695 0.95906 0.95568 1.69564 1.43016 1.41209 0.99533 0.86439 0.81539 0.81554 0.77233 1.20010 1.21062 1.19998 1.23217 0.90824 0.89145 0.97879 0.92835 0.93187 0.92246 0.92665 0.92805 0.92718 0.92316 0.92985 0.92645 0.91595 0.91387 0.88314 0.88848 0.77292 0.92704 0.93212 0.90774 0.90477 0.76156 0.91796 0.92440 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.23 37.16 0.31 -0.69 16 2 C -0.07 -0.51 0.80 -154.51 -0.12 -0.63 16 3 C -0.14 -0.99 8.47 37.16 0.31 -0.67 16 4 C -0.14 -1.10 8.23 37.16 0.31 -0.79 16 5 C -0.08 -0.67 4.55 -26.73 -0.12 -0.79 16 6 C -0.16 -1.58 4.18 -90.62 -0.38 -1.95 16 7 H 0.11 1.00 6.06 -51.93 -0.31 0.69 16 8 C -0.19 -2.01 10.10 -26.73 -0.27 -2.28 16 9 C 0.11 1.49 6.15 -67.93 -0.42 1.07 16 10 H 0.13 2.05 7.40 -51.93 -0.38 1.66 16 11 N -0.72 -11.17 5.53 -58.68 -0.32 -11.49 16 12 C 0.72 14.91 8.49 -86.91 -0.74 14.17 16 13 O -0.60 -14.65 16.16 5.29 0.09 -14.56 16 14 N -0.63 -13.14 3.33 -176.09 -0.59 -13.72 16 15 C 0.11 1.84 6.15 -3.06 -0.02 1.82 16 16 C -0.12 -2.29 6.12 -24.89 -0.15 -2.44 16 17 C 0.25 6.06 0.89 -89.50 -0.08 5.98 16 18 O -0.58 -15.11 13.19 -35.23 -0.46 -15.58 16 19 C -0.54 -13.94 8.25 -34.44 -0.28 -14.23 16 20 H 0.07 1.68 7.77 -52.48 -0.41 1.27 16 21 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 22 N -0.89 -23.96 10.72 55.43 0.59 -23.36 16 23 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 C 0.11 2.71 5.64 -2.41 -0.01 2.70 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 7.20 -51.93 -0.37 0.07 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.46 6.14 -51.92 -0.32 0.14 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.56 7.88 -51.93 -0.41 0.15 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.39 5.13 7.81 -40.82 -0.32 4.81 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 46 H 0.39 10.38 6.93 45.56 0.32 10.70 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 49 H 0.08 2.24 7.64 -51.93 -0.40 1.84 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -29.63 386.27 -9.73 -39.35 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -8.07 Total: 15.25 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.77 Total: 3.01 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.32 Total: -48.58 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.38 Total: -30.14 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.63 -9.73 -39.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593445172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.724 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds