Wall clock time and date at job start Tue Mar 31 2020 10:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46889 * 2 1 4 4 C 1.53002 * 109.46856 * 240.00565 * 2 1 3 5 5 C 1.52990 * 109.47460 * 120.00384 * 2 1 3 6 6 C 1.53003 * 109.47383 * 59.99919 * 5 2 1 7 7 H 1.09002 * 115.54973 * 29.41636 * 6 5 2 8 8 C 1.53005 * 117.49874 * 243.74600 * 6 5 2 9 9 C 1.52999 * 59.99973 * 252.48565 * 8 6 5 10 10 H 1.08995 * 117.49529 * 107.48826 * 9 8 6 11 11 N 1.46496 * 117.49799 * 252.51088 * 9 8 6 12 12 C 1.34778 * 119.99668 * 223.62248 * 11 9 8 13 13 O 1.21584 * 120.00408 * 0.02562 * 12 11 9 14 14 N 1.34783 * 119.99973 * 179.97438 * 12 11 9 15 15 C 1.47026 * 125.64509 * 0.02927 * 14 12 11 16 16 C 1.54324 * 107.27048 * 181.01813 * 15 14 12 17 17 C 1.55160 * 102.94141 * 22.19161 * 16 15 14 18 18 O 1.42903 * 111.00327 * 82.56850 * 17 16 15 19 19 C 1.50696 * 111.00740 * 206.42286 * 17 16 15 20 20 H 1.08005 * 119.99591 * 0.02562 * 19 17 16 21 21 C 1.37875 * 120.00462 * 180.02562 * 19 17 16 22 22 N 1.31517 * 119.99561 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00470 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47178 * 59.99649 * 23 21 19 25 25 H 1.48497 * 109.47171 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46805 * 299.99824 * 23 21 19 27 27 C 1.47425 * 125.64981 * 179.71334 * 14 12 11 28 28 H 1.09004 * 109.46934 * 299.99010 * 1 2 3 29 29 H 1.08999 * 109.47916 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46891 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47374 * 300.00389 * 3 2 1 33 33 H 1.08996 * 109.47147 * 60.00198 * 3 2 1 34 34 H 1.09008 * 109.47218 * 299.99551 * 4 2 1 35 35 H 1.08999 * 109.47153 * 59.99171 * 4 2 1 36 36 H 1.09000 * 109.46962 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47451 * 299.99711 * 5 2 1 38 38 H 1.09000 * 109.47146 * 180.02562 * 5 2 1 39 39 H 1.09004 * 117.49602 * 359.97438 * 8 6 5 40 40 H 1.09004 * 117.49360 * 144.99617 * 8 6 5 41 41 H 0.96997 * 120.00536 * 43.62293 * 11 9 8 42 42 H 1.08996 * 109.88365 * 300.43878 * 15 14 12 43 43 H 1.09003 * 109.88340 * 61.44719 * 15 14 12 44 44 H 1.08997 * 110.72185 * 140.55322 * 16 15 14 45 45 H 1.09004 * 110.72263 * 263.65571 * 16 15 14 46 46 H 0.96700 * 114.00077 * 179.97438 * 18 17 16 47 47 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.37050 * 274.75358 * 27 14 12 49 49 H 1.09000 * 110.36008 * 37.07941 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 6 1.5301 -2.1638 1.2491 7 1 1.3639 -2.6037 0.2657 8 6 0.5839 -2.5786 2.3777 9 6 2.0262 -3.0890 2.3621 10 1 2.7161 -2.6701 3.0946 11 7 2.2414 -4.4982 2.0246 12 6 3.1129 -5.2369 2.7398 13 8 3.7200 -4.7339 3.6653 14 7 3.3106 -6.5335 2.4296 15 6 2.6458 -7.2652 1.3413 16 6 3.1631 -8.7185 1.3835 17 6 3.6633 -8.8671 2.8447 18 8 2.5816 -9.1697 3.7281 19 6 4.7454 -9.9114 2.9417 20 1 5.0684 -10.4383 2.0559 21 6 5.3232 -10.1943 4.1612 22 7 4.9303 -9.5523 5.2397 23 14 6.6651 -11.4883 4.2813 24 1 7.8116 -11.0935 3.4240 25 1 7.1179 -11.6024 5.6910 26 1 6.1329 -12.7971 3.8243 27 6 4.2339 -7.4513 3.1213 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 1.6768 -0.2075 2.1392 38 1 3.1301 -0.7208 1.2493 39 1 0.3251 -1.8239 3.1203 40 1 -0.2048 -3.2914 2.1366 41 1 1.7568 -4.8997 1.2865 42 1 1.5662 -7.2514 1.4906 43 1 2.8931 -6.8089 0.3827 44 1 2.3555 -9.4214 1.1790 45 1 3.9815 -8.8573 0.6769 46 1 2.8457 -9.2722 4.6527 47 1 5.3371 -9.7511 6.0975 48 1 5.2395 -7.3583 2.7111 49 1 4.2397 -7.2477 4.1921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593445172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:51 Heat of formation + Delta-G solvation = -91.205350 kcal Electronic energy + Delta-G solvation = -26380.840816 eV Core-core repulsion = 22728.143408 eV Total energy + Delta-G solvation = -3652.697408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32507 -39.85720 -38.90400 -37.11226 -36.07585 -34.15103 -33.82010 -31.56376 -29.57532 -28.32801 -28.07573 -28.01236 -26.93137 -24.45908 -22.80537 -21.94435 -21.43495 -21.09598 -19.49642 -19.25848 -18.80332 -17.61123 -17.00272 -16.77718 -16.25976 -16.12723 -15.49544 -15.41418 -15.16127 -15.04627 -14.77451 -14.63725 -14.15848 -14.06737 -13.75339 -13.49796 -13.37108 -13.16594 -13.08994 -12.81500 -12.60469 -12.55150 -12.49772 -12.43591 -12.32246 -12.26293 -12.20448 -12.09927 -11.59120 -11.46511 -11.38938 -11.28751 -11.20895 -10.88507 -10.63960 -10.33763 -9.81813 -9.24680 -8.25202 -6.42417 1.43824 1.44616 1.52975 1.62142 2.06646 2.38498 2.95872 3.00297 3.02918 3.68825 3.80268 3.81569 3.95916 4.08166 4.10550 4.14729 4.17296 4.25801 4.33283 4.46685 4.60241 4.72563 4.73430 4.75726 4.82461 4.86362 4.95019 5.00090 5.01637 5.02164 5.04765 5.09311 5.15047 5.18730 5.29368 5.29665 5.36102 5.39211 5.45087 5.47139 5.57145 5.58642 5.63332 5.76950 6.02566 6.17015 6.64765 7.04937 7.30249 7.39224 7.56163 8.80276 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002529 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.543804 B =11070.418074 C =11147.396184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.078 4.078 6 C -0.130 4.130 7 H 0.120 0.880 8 C -0.175 4.175 9 C 0.071 3.929 10 H 0.107 0.893 11 N -0.700 5.700 12 C 0.712 3.288 13 O -0.646 6.646 14 N -0.632 5.632 15 C 0.107 3.893 16 C -0.111 4.111 17 C 0.233 3.767 18 O -0.590 6.590 19 C -0.556 4.556 20 H 0.072 0.928 21 C 0.023 3.977 22 N -0.919 5.919 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.268 1.268 27 C 0.125 3.875 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.409 0.591 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.377 0.623 47 H 0.270 0.730 48 H 0.043 0.957 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 16.797 -13.553 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.116 4.116 6 C -0.150 4.150 7 H 0.138 0.862 8 C -0.214 4.214 9 C -0.035 4.035 10 H 0.125 0.875 11 N -0.354 5.354 12 C 0.414 3.586 13 O -0.528 6.528 14 N -0.368 5.368 15 C -0.015 4.015 16 C -0.148 4.148 17 C 0.192 3.808 18 O -0.399 6.399 19 C -0.594 4.594 20 H 0.090 0.910 21 C -0.177 4.177 22 N -0.559 5.559 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.212 1.212 26 H -0.193 1.193 27 C 0.001 3.999 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.245 0.755 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.227 0.773 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.423 17.267 -13.247 23.715 hybrid contribution 1.117 -0.960 0.996 1.778 sum -8.306 16.307 -12.251 22.022 Atomic orbital electron populations 1.21852 0.93859 1.02104 1.01684 1.20494 0.96213 0.95254 0.94459 1.21871 1.00808 0.95149 1.02081 1.21950 1.00679 1.00489 0.97025 1.21264 0.99977 0.91906 0.98447 1.22967 1.01688 0.95564 0.94755 0.86176 1.23703 0.92729 1.03437 1.01534 1.21565 0.98933 0.80113 1.02905 0.87482 1.44262 1.44833 1.10301 1.35963 1.15699 0.80551 0.80342 0.82013 1.90831 1.55205 1.72259 1.34523 1.47835 1.45279 1.07967 1.35759 1.22120 0.97120 0.92595 0.89644 1.22599 1.01669 0.94844 0.95714 1.19885 0.84774 0.88663 0.87476 1.86045 1.37350 1.93440 1.23096 1.21815 1.20568 1.22011 0.94992 0.90992 1.25874 0.98731 0.97740 0.95365 1.69689 1.43988 1.42371 0.99832 0.85473 0.79030 0.79314 0.77010 1.19491 1.21209 1.19262 1.22766 0.91122 0.90594 0.95442 0.92698 0.92493 0.92314 0.93061 0.92042 0.92494 0.92304 0.92145 0.93327 0.91235 0.92364 0.87292 0.87785 0.75461 0.90995 0.89129 0.89609 0.89131 0.77251 0.92019 0.93905 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.23 71.98 0.59 -1.00 16 2 C -0.06 -0.83 0.80 -52.18 -0.04 -0.87 16 3 C -0.14 -1.71 8.47 71.98 0.61 -1.10 16 4 C -0.14 -1.87 8.23 71.98 0.59 -1.28 16 5 C -0.08 -1.24 4.55 30.59 0.14 -1.10 16 6 C -0.13 -2.26 4.18 -10.79 -0.05 -2.31 16 7 H 0.12 1.84 6.06 -2.39 -0.01 1.83 16 8 C -0.18 -3.24 10.10 30.60 0.31 -2.93 16 9 C 0.07 1.85 6.15 44.99 0.28 2.12 16 10 H 0.11 3.40 7.40 -2.39 -0.02 3.38 16 11 N -0.70 -20.88 5.53 -457.82 -2.53 -23.41 16 12 C 0.71 29.84 8.49 179.05 1.52 31.36 16 13 O -0.65 -33.21 16.16 -3.98 -0.06 -33.27 16 14 N -0.63 -26.45 3.33 -829.29 -2.76 -29.21 16 15 C 0.11 3.46 6.15 86.73 0.53 4.00 16 16 C -0.11 -4.13 6.12 31.78 0.19 -3.94 16 17 C 0.23 11.36 0.89 -10.07 -0.01 11.35 16 18 O -0.59 -31.04 13.19 -148.98 -1.97 -33.01 16 19 C -0.56 -28.91 8.25 25.60 0.21 -28.70 16 20 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 21 C 0.02 1.23 5.30 84.65 0.45 1.68 16 22 N -0.92 -50.87 10.72 21.45 0.23 -50.64 16 23 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 C 0.12 6.27 5.64 86.93 0.49 6.76 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.69 7.20 -2.39 -0.02 0.67 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.75 6.14 -2.38 -0.01 0.74 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 1.07 7.88 -2.39 -0.02 1.05 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.82 8.03 -2.39 -0.02 1.80 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.75 16 41 H 0.41 9.54 7.81 -92.71 -0.72 8.82 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.09 3.12 8.02 -2.39 -0.02 3.10 16 46 H 0.38 21.06 6.93 -74.06 -0.51 20.55 16 47 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 48 H 0.04 2.22 8.03 -2.39 -0.02 2.20 16 49 H 0.04 2.16 7.64 -2.39 -0.02 2.14 16 Total: -1.00 -67.00 386.27 0.46 -66.54 By element: Atomic # 1 Polarization: 45.35 SS G_CDS: -0.30 Total: 45.05 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 5.82 Total: 14.04 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -5.06 Total: -103.26 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -2.03 Total: -66.28 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -67.00 0.46 -66.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593445172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.666 kcal (2) G-P(sol) polarization free energy of solvation -66.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds