Wall clock time and date at job start Tue Mar 31 2020 10:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21270 * 119.99966 * 2 1 4 4 N 1.34781 * 119.99789 * 180.02562 * 2 1 3 5 5 C 1.46495 * 119.99615 * 179.97438 * 4 2 1 6 6 H 1.09006 * 109.47274 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47459 * 299.99896 * 5 4 2 8 8 C 1.52998 * 109.47285 * 295.00290 * 7 5 4 9 9 C 1.53001 * 109.47575 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47404 * 175.00227 * 9 8 7 11 11 C 1.53001 * 109.46691 * 295.00283 * 9 8 7 12 12 C 1.50698 * 109.47209 * 60.00188 * 5 4 2 13 13 O 1.21277 * 120.00105 * 339.99929 * 12 5 4 14 14 N 1.34777 * 120.00024 * 159.99507 * 12 5 4 15 15 C 1.46500 * 119.99983 * 179.97438 * 14 12 5 16 16 C 1.53007 * 109.47074 * 178.19750 * 15 14 12 17 17 C 1.50693 * 115.55027 * 65.14224 * 16 15 14 18 18 H 1.07993 * 120.00529 * 265.40331 * 17 16 15 19 19 C 1.37886 * 119.99579 * 85.40057 * 17 16 15 20 20 N 1.31510 * 120.00036 * 353.54651 * 19 17 16 21 21 Si 1.86803 * 119.99726 * 173.54383 * 19 17 16 22 22 H 1.48498 * 109.47177 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46719 * 119.99980 * 21 19 17 24 24 H 1.48497 * 109.47029 * 239.99776 * 21 19 17 25 25 C 1.53005 * 117.49617 * 279.47567 * 16 15 14 26 26 C 1.52999 * 117.49639 * 210.81967 * 16 15 14 27 27 H 1.09005 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46537 * 299.99827 * 1 2 3 29 29 H 1.08998 * 109.47298 * 60.00096 * 1 2 3 30 30 H 0.96998 * 119.99855 * 359.97438 * 4 2 1 31 31 H 1.08997 * 109.47073 * 54.99965 * 7 5 4 32 32 H 1.08998 * 109.47159 * 175.00203 * 7 5 4 33 33 H 1.08998 * 109.47299 * 299.99686 * 8 7 5 34 34 H 1.08998 * 109.47093 * 59.99873 * 8 7 5 35 35 H 1.08995 * 109.47045 * 54.99502 * 9 8 7 36 36 H 1.08995 * 109.47611 * 59.99621 * 10 9 8 37 37 H 1.09001 * 109.47196 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.46970 * 299.99298 * 10 9 8 39 39 H 1.09000 * 109.47786 * 59.99890 * 11 9 8 40 40 H 1.08998 * 109.47300 * 180.02562 * 11 9 8 41 41 H 1.09005 * 109.46893 * 299.99503 * 11 9 8 42 42 H 0.97003 * 119.99938 * 0.27717 * 14 12 5 43 43 H 1.08993 * 109.47545 * 298.19668 * 15 14 12 44 44 H 1.09003 * 109.46855 * 58.20303 * 15 14 12 45 45 H 0.96997 * 119.99658 * 185.05479 * 20 19 17 46 46 H 1.09002 * 117.50077 * 359.97438 * 25 16 15 47 47 H 1.08994 * 117.49736 * 145.02442 * 25 16 15 48 48 H 1.09007 * 117.49741 * 214.97885 * 26 16 15 49 49 H 1.09001 * 117.50110 * 359.97075 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0093 -2.1949 -0.0010 7 6 4.1554 -0.4457 -1.2503 8 6 3.7502 -1.2356 -2.4964 9 6 4.2592 -0.5138 -3.7458 10 6 3.9636 -1.3647 -4.9824 11 6 3.5545 0.8380 -3.8764 12 6 4.1487 -0.4571 1.2293 13 8 3.4205 0.3042 1.8302 14 7 5.4075 -0.6681 1.6620 15 6 5.8965 0.0226 2.8579 16 6 7.3293 -0.4244 3.1550 17 6 8.3567 -0.0438 2.1204 18 1 8.6217 -0.7419 1.3401 19 6 8.9584 1.1958 2.1699 20 7 8.5470 2.0922 3.0398 21 14 10.3580 1.6020 1.0013 22 1 10.6286 0.4321 0.1275 23 1 9.9804 2.7683 0.1632 24 1 11.5772 1.9286 1.7837 25 6 7.5171 -1.7589 3.8795 26 6 7.7741 -0.4435 4.6188 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.6959 -2.0073 -0.0005 31 1 3.7208 0.5528 -1.2959 32 1 5.2417 -0.3676 -1.2070 33 1 4.1848 -2.2341 -2.4510 34 1 2.6639 -1.3138 -2.5397 35 1 5.3344 -0.3563 -3.6616 36 1 2.8883 -1.5222 -5.0666 37 1 4.3258 -0.8502 -5.8725 38 1 4.4657 -2.3276 -4.8894 39 1 3.7651 1.4442 -2.9954 40 1 3.9167 1.3521 -4.7666 41 1 2.4792 0.6804 -3.9605 42 1 5.9912 -1.2740 1.1792 43 1 5.8796 1.0991 2.6881 44 1 5.2565 -0.2217 3.7057 45 1 8.9194 2.9878 3.0262 46 1 6.6199 -2.3182 4.1448 47 1 8.3840 -2.3613 3.6081 48 1 8.8101 -0.1810 4.8335 49 1 7.0462 -0.1371 5.3701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:23 Heat of formation + Delta-G solvation = -95.564028 kcal Electronic energy + Delta-G solvation = -27081.209309 eV Core-core repulsion = 23428.322894 eV Total energy + Delta-G solvation = -3652.886415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48601 -39.71439 -38.38535 -37.84321 -35.60933 -34.88502 -33.97593 -32.62447 -30.13378 -28.76554 -28.01474 -27.54617 -26.25513 -23.44699 -22.97495 -22.09040 -21.30843 -20.73572 -20.45748 -18.46254 -18.41916 -17.57453 -16.96990 -16.66646 -16.28287 -16.20168 -15.91020 -15.75241 -15.43334 -14.90405 -14.76912 -14.65427 -14.27498 -14.19420 -13.92763 -13.59447 -13.46334 -13.21224 -13.07569 -12.95218 -12.87830 -12.83579 -12.69032 -12.56890 -12.33478 -12.14479 -12.04512 -11.63352 -11.49723 -11.48170 -11.40180 -11.05010 -10.85771 -10.48443 -10.47792 -10.13231 -9.86050 -9.69376 -8.10911 -6.23903 1.39456 1.42637 1.52128 1.74795 1.87448 2.28501 2.41305 2.63673 3.17873 3.48421 3.76814 3.91721 3.92590 4.10014 4.11763 4.21334 4.25866 4.36065 4.49952 4.55303 4.56160 4.64178 4.67874 4.71208 4.72267 4.81207 4.86793 4.94497 4.98981 5.02780 5.05122 5.07016 5.11678 5.18480 5.26222 5.28242 5.41028 5.49615 5.56350 5.58265 5.60268 5.61830 5.71462 5.78196 6.35781 6.75834 6.81430 6.86832 7.45232 7.46750 7.60096 8.96993 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.004398 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.377031 B = 6364.985712 C = 7768.946550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.500 3.500 3 O -0.573 6.573 4 N -0.705 5.705 5 C 0.144 3.856 6 H 0.149 0.851 7 C -0.132 4.132 8 C -0.095 4.095 9 C -0.100 4.100 10 C -0.139 4.139 11 C -0.146 4.146 12 C 0.483 3.517 13 O -0.575 6.575 14 N -0.699 5.699 15 C 0.185 3.815 16 C 0.005 3.995 17 C -0.500 4.500 18 H 0.068 0.932 19 C 0.022 3.978 20 N -0.911 5.911 21 Si 0.948 3.052 22 H -0.256 1.256 23 H -0.292 1.292 24 H -0.284 1.284 25 C -0.170 4.170 26 C -0.163 4.163 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.423 0.577 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.409 0.591 43 H 0.016 0.984 44 H 0.030 0.970 45 H 0.257 0.743 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 -13.872 -13.324 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.451 6.451 4 N -0.360 5.360 5 C 0.035 3.965 6 H 0.166 0.834 7 C -0.171 4.171 8 C -0.132 4.132 9 C -0.119 4.119 10 C -0.197 4.197 11 C -0.204 4.204 12 C 0.269 3.731 13 O -0.454 6.454 14 N -0.350 5.350 15 C 0.060 3.940 16 C 0.005 3.995 17 C -0.537 4.537 18 H 0.086 0.914 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.774 3.226 22 H -0.179 1.179 23 H -0.218 1.218 24 H -0.210 1.210 25 C -0.207 4.207 26 C -0.202 4.202 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.261 0.739 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.245 0.755 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.720 -12.428 -12.782 22.495 hybrid contribution 1.116 0.795 -0.043 1.371 sum -12.604 -11.633 -12.824 21.416 Atomic orbital electron populations 1.21823 0.88765 1.06264 1.05060 1.21481 0.91985 0.83338 0.74294 1.90731 1.71614 1.33488 1.49222 1.45621 1.04881 1.09478 1.76034 1.20884 0.82566 1.01963 0.91116 0.83353 1.21945 1.00841 1.00755 0.93541 1.21524 1.01534 0.98849 0.91282 1.21134 0.99754 0.95182 0.95827 1.21771 1.02008 0.99612 0.96259 1.21851 1.00639 0.97283 1.00590 1.21786 0.81898 0.82547 0.86863 1.90678 1.57534 1.37973 1.59227 1.45823 1.13225 1.46812 1.29143 1.20434 0.93646 0.94344 0.85575 1.19050 0.91518 0.96592 0.92381 1.20703 1.20648 1.00380 1.12019 0.91420 1.25739 0.98758 0.96699 0.96636 1.70124 1.43935 1.03906 1.36913 0.85660 0.79604 0.78267 0.79063 1.17947 1.21835 1.21013 1.23003 1.02101 0.90265 1.05319 1.22427 0.99878 1.01789 0.96072 0.87073 0.89773 0.88121 0.73909 0.92236 0.91692 0.89531 0.91125 0.92150 0.92115 0.92792 0.91672 0.95079 0.92556 0.92492 0.75486 0.96551 0.95179 0.93405 0.89182 0.89201 0.91842 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.39 71.24 0.74 -1.96 16 2 C 0.50 13.97 6.70 87.66 0.59 14.56 16 3 O -0.57 -23.60 12.96 19.46 0.25 -23.34 16 4 N -0.71 -14.91 4.65 -446.11 -2.08 -16.98 16 5 C 0.14 3.63 3.01 44.24 0.13 3.77 16 6 H 0.15 2.38 8.14 -2.38 -0.02 2.36 16 7 C -0.13 -3.51 4.30 30.59 0.13 -3.38 16 8 C -0.09 -1.69 4.57 30.59 0.14 -1.55 16 9 C -0.10 -1.91 2.92 -10.80 -0.03 -1.95 16 10 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 11 C -0.15 -3.25 8.95 71.98 0.64 -2.61 16 12 C 0.48 18.54 6.82 87.66 0.60 19.14 16 13 O -0.58 -27.94 13.68 19.44 0.27 -27.68 16 14 N -0.70 -27.37 5.48 -463.06 -2.54 -29.90 16 15 C 0.18 8.87 5.50 86.38 0.48 9.35 16 16 C 0.01 0.25 1.38 -52.93 -0.07 0.18 16 17 C -0.50 -25.73 8.63 25.60 0.22 -25.51 16 18 H 0.07 3.31 7.82 -2.91 -0.02 3.29 16 19 C 0.02 1.20 5.39 84.66 0.46 1.65 16 20 N -0.91 -53.45 12.91 21.45 0.28 -53.18 16 21 Si 0.95 43.13 29.55 68.60 2.03 45.16 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 C -0.17 -6.67 9.96 30.62 0.30 -6.37 16 26 C -0.16 -7.59 9.42 30.62 0.29 -7.30 16 27 H 0.11 0.93 7.91 -2.38 -0.02 0.91 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.42 4.79 8.67 -92.71 -0.80 3.98 16 31 H 0.06 2.08 4.47 -2.39 -0.01 2.07 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.15 7.75 -2.39 -0.02 1.13 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.03 0.87 6.56 -2.39 -0.02 0.85 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.41 13.83 8.36 -92.71 -0.78 13.06 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 45 H 0.26 14.61 8.32 -92.71 -0.77 13.84 16 46 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 48 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 49 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -79.02 395.88 2.84 -76.18 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.65 Total: 33.03 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 5.28 Total: -3.28 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -4.33 Total: -100.06 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: 0.52 Total: -51.02 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -79.02 2.84 -76.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.384 kcal (2) G-P(sol) polarization free energy of solvation -79.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds