Wall clock time and date at job start Tue Mar 31 2020 10:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47323 * 64.99535 * 3 2 1 5 5 C 1.52999 * 109.47056 * 185.45530 * 4 3 2 6 6 C 1.52995 * 109.46908 * 185.00202 * 3 2 1 7 7 N 1.46492 * 109.47594 * 64.83531 * 6 3 2 8 8 C 1.46503 * 120.00022 * 84.11475 * 7 6 3 9 9 C 1.50702 * 109.47103 * 97.35752 * 8 7 6 10 10 H 1.08002 * 119.99820 * 114.21325 * 9 8 7 11 11 C 1.37873 * 120.00328 * 294.20798 * 9 8 7 12 12 N 1.31518 * 119.99606 * 1.76130 * 11 9 8 13 13 Si 1.86800 * 120.00279 * 181.75642 * 11 9 8 14 14 H 1.48499 * 109.46818 * 90.00219 * 13 11 9 15 15 H 1.48502 * 109.47312 * 210.00125 * 13 11 9 16 16 H 1.48502 * 109.47247 * 330.00673 * 13 11 9 17 17 C 1.34777 * 120.00611 * 264.11762 * 7 6 3 18 18 O 1.21286 * 119.99249 * 5.02733 * 17 7 6 19 19 C 1.50701 * 120.00386 * 185.03439 * 17 7 6 20 20 H 1.08994 * 109.39967 * 40.85802 * 19 17 7 21 21 C 1.53071 * 109.40092 * 160.60230 * 19 17 7 22 22 C 1.53363 * 108.41236 * 169.03390 * 21 19 17 23 23 C 1.52918 * 108.66357 * 292.44379 * 22 21 19 24 24 N 1.45764 * 110.48693 * 50.76425 * 23 22 21 25 25 C 1.33349 * 124.10472 * 340.94407 * 24 23 22 26 26 O 1.21275 * 118.24621 * 182.19844 * 25 24 23 27 27 H 1.09007 * 109.46751 * 300.00516 * 1 2 3 28 28 H 1.09002 * 109.46479 * 59.99873 * 1 2 3 29 29 H 1.08990 * 109.47286 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47247 * 239.99463 * 2 1 3 31 31 H 1.09000 * 109.47101 * 119.99709 * 2 1 3 32 32 H 1.09003 * 109.46942 * 304.99731 * 3 2 1 33 33 H 1.08997 * 109.47147 * 305.46324 * 4 3 2 34 34 H 1.09000 * 109.46686 * 65.45871 * 4 3 2 35 35 H 1.08996 * 109.47368 * 304.23505 * 5 4 3 36 36 H 1.09003 * 109.46935 * 64.23527 * 5 4 3 37 37 H 1.08997 * 109.47250 * 184.23092 * 5 4 3 38 38 H 1.09004 * 109.47279 * 304.83425 * 6 3 2 39 39 H 1.09005 * 109.47219 * 184.84122 * 6 3 2 40 40 H 1.09000 * 109.47065 * 337.35820 * 8 7 6 41 41 H 1.08997 * 109.47258 * 217.36051 * 8 7 6 42 42 H 0.97010 * 119.99782 * 175.00675 * 12 11 9 43 43 H 1.08999 * 109.67234 * 288.76348 * 21 19 17 44 44 H 1.09004 * 109.66869 * 49.29227 * 21 19 17 45 45 H 1.08994 * 109.60028 * 172.70008 * 22 21 19 46 46 H 1.08999 * 109.75026 * 52.28362 * 22 21 19 47 47 H 1.09001 * 109.30503 * 290.45068 * 23 22 21 48 48 H 1.09003 * 109.30085 * 171.07199 * 23 22 21 49 49 H 0.96998 * 117.94669 * 160.92170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0253 3.6050 1.2512 6 6 3.5649 1.4442 -0.1258 7 7 3.9482 0.8941 -1.4282 8 6 3.9717 1.7590 -2.6105 9 6 5.3802 2.2349 -2.8568 10 1 5.9079 1.9228 -3.7459 11 6 5.9950 3.0689 -1.9473 12 7 5.3651 3.4212 -0.8478 13 14 7.7227 3.6984 -2.2765 14 1 7.6487 4.9787 -3.0252 15 1 8.4233 3.9194 -0.9859 16 1 8.4695 2.6975 -3.0801 17 6 4.2791 -0.4077 -1.5391 18 8 4.1723 -1.1441 -0.5813 19 6 4.7821 -0.9482 -2.8528 20 1 5.4633 -0.2269 -3.3041 21 6 5.5254 -2.2641 -2.6102 22 6 5.7852 -2.9310 -3.9665 23 6 4.4458 -3.3667 -4.5621 24 7 3.4968 -2.2605 -4.5472 25 6 3.6193 -1.1806 -3.7744 26 8 2.7448 -0.3415 -3.8180 27 1 -0.3633 0.5140 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6055 1.9815 -0.8419 33 1 0.5574 2.0400 1.4440 34 1 2.1471 1.6473 2.1418 35 1 3.0910 3.6919 1.0396 36 1 1.4569 4.1011 0.4644 37 1 1.8057 4.0753 2.2097 38 1 3.9956 0.8333 0.6676 39 1 3.9355 2.4657 -0.0395 40 1 3.3215 2.6181 -2.4452 41 1 3.6205 1.1991 -3.4773 42 1 5.8230 3.9482 -0.1742 43 1 6.4740 -2.0633 -2.1122 44 1 4.9161 -2.9205 -1.9889 45 1 6.4250 -3.8026 -3.8289 46 1 6.2710 -2.2231 -4.6380 47 1 4.0437 -4.1943 -3.9776 48 1 4.5987 -3.6964 -5.5898 49 1 2.7282 -2.3130 -5.1365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601040321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:54 Heat of formation + Delta-G solvation = -108.114596 kcal Electronic energy + Delta-G solvation = -28747.481804 eV Core-core repulsion = 25094.051156 eV Total energy + Delta-G solvation = -3653.430648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.91094 -40.02612 -38.08784 -37.41040 -36.18806 -34.01652 -33.83444 -32.59583 -30.95663 -29.88098 -28.26689 -26.14485 -24.82235 -24.53425 -23.68633 -23.46504 -21.09191 -20.47981 -19.51311 -18.70278 -18.21503 -17.76251 -17.12173 -16.93197 -16.62405 -15.90194 -15.75949 -15.35755 -15.24626 -15.10884 -14.84879 -14.70330 -14.32339 -14.24046 -14.13438 -13.84656 -13.52352 -13.42267 -12.92613 -12.83097 -12.74965 -12.71994 -12.51256 -12.32215 -12.23868 -12.18255 -12.04790 -11.83372 -11.69594 -11.42009 -11.40274 -11.22462 -11.13912 -10.68871 -10.50354 -10.44196 -9.96795 -8.80533 -8.07818 -6.32210 1.41533 1.44068 1.50507 1.52228 1.86593 2.40380 2.45280 2.70769 3.18832 3.69128 3.74917 3.90528 3.91837 3.93628 4.06837 4.16523 4.30575 4.40613 4.47159 4.52825 4.58264 4.60544 4.70020 4.81439 4.87296 4.90423 4.93977 4.99934 5.01821 5.06904 5.08231 5.09869 5.17490 5.23964 5.29624 5.36613 5.39183 5.51369 5.54466 5.61633 5.64772 5.93723 6.01555 6.18782 6.21072 6.29015 6.67576 7.17186 7.23842 7.44014 7.63034 8.87761 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.007610 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.521319 B = 3678.680778 C = 5806.935821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.091 4.091 4 C -0.104 4.104 5 C -0.148 4.148 6 C 0.095 3.905 7 N -0.551 5.551 8 C 0.217 3.783 9 C -0.555 4.555 10 H 0.059 0.941 11 C 0.034 3.966 12 N -0.889 5.889 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.513 3.487 18 O -0.605 6.605 19 C -0.125 4.125 20 H 0.123 0.877 21 C -0.103 4.103 22 C -0.130 4.130 23 C 0.105 3.895 24 N -0.707 5.707 25 C 0.529 3.471 26 O -0.573 6.573 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.140 0.860 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.265 0.735 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 -10.661 -4.143 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.111 4.111 4 C -0.142 4.142 5 C -0.205 4.205 6 C -0.028 4.028 7 N -0.277 5.277 8 C 0.098 3.902 9 C -0.593 4.593 10 H 0.077 0.923 11 C -0.168 4.168 12 N -0.527 5.527 13 Si 0.782 3.218 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.193 1.193 17 C 0.300 3.700 18 O -0.491 6.491 19 C -0.149 4.149 20 H 0.140 0.860 21 C -0.141 4.141 22 C -0.167 4.167 23 C -0.018 4.018 24 N -0.359 5.359 25 C 0.315 3.685 26 O -0.454 6.454 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.156 0.844 40 H 0.026 0.974 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.137 0.863 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.133 0.867 49 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.496 -10.386 -3.439 11.222 hybrid contribution 0.748 0.670 -0.164 1.018 sum -1.747 -9.716 -3.603 10.508 Atomic orbital electron populations 1.21758 0.94609 1.01489 1.01885 1.21358 0.96311 0.96203 0.99994 1.21488 0.96105 0.95572 0.97941 1.21459 1.01316 0.95641 0.95816 1.21765 1.01586 0.95787 1.01400 1.22368 0.93408 1.03449 0.83588 1.48332 1.61081 1.07854 1.10384 1.19644 0.95428 0.89921 0.85252 1.21766 1.01139 1.28970 1.07440 0.92283 1.25716 1.01322 0.94837 0.94926 1.69514 1.37198 1.37362 1.08620 0.85603 0.79979 0.78798 0.77449 1.20081 1.21233 1.19292 1.20117 0.77843 0.82729 0.89283 1.90518 1.58731 1.58497 1.41314 1.21431 0.97496 1.01770 0.94157 0.85952 1.21523 1.00068 0.93148 0.99334 1.21938 0.97535 1.02682 0.94581 1.21734 0.88433 0.87632 1.03984 1.45364 1.28806 1.19590 1.42106 1.19675 0.86725 0.81715 0.80392 1.90654 1.42161 1.43921 1.68647 0.91005 0.93617 0.92608 0.95273 0.93642 0.93707 0.90356 0.92537 0.93443 0.93519 0.91367 0.95588 0.84367 0.97413 0.91169 0.92522 0.91080 0.91274 0.86302 0.90659 0.90285 0.86738 0.75625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.68 71.98 0.70 -3.83 16 2 C -0.10 -4.12 4.50 30.60 0.14 -3.98 16 3 C -0.09 -3.84 2.05 -10.79 -0.02 -3.86 16 4 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 5 C -0.15 -5.04 9.77 71.98 0.70 -4.33 16 6 C 0.09 4.63 4.38 86.38 0.38 5.01 16 7 N -0.55 -27.76 2.13 -826.15 -1.76 -29.52 16 8 C 0.22 11.36 4.86 85.63 0.42 11.78 16 9 C -0.55 -29.31 8.10 25.60 0.21 -29.10 16 10 H 0.06 3.02 7.61 -2.91 -0.02 3.00 16 11 C 0.03 1.77 5.42 84.65 0.46 2.23 16 12 N -0.89 -47.40 9.68 21.45 0.21 -47.20 16 13 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 C 0.51 24.71 5.23 87.66 0.46 25.17 16 18 O -0.61 -30.89 13.94 -3.05 -0.04 -30.93 16 19 C -0.12 -4.89 2.03 -12.42 -0.03 -4.91 16 20 H 0.12 5.13 6.26 -2.39 -0.01 5.12 16 21 C -0.10 -3.09 5.00 30.74 0.15 -2.93 16 22 C -0.13 -2.43 6.02 30.69 0.18 -2.25 16 23 C 0.10 1.69 7.17 86.49 0.62 2.31 16 24 N -0.71 -17.71 5.45 -467.30 -2.55 -20.25 16 25 C 0.53 19.44 7.11 87.72 0.62 20.07 16 26 O -0.57 -25.62 13.97 -3.01 -0.04 -25.66 16 27 H 0.07 1.99 6.45 -2.38 -0.02 1.98 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.37 6.01 -2.39 -0.01 1.36 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 2.31 6.33 -2.39 -0.02 2.29 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.88 6.30 -2.39 -0.02 1.87 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.03 1.34 7.32 -2.38 -0.02 1.32 16 39 H 0.14 7.11 2.92 -2.38 -0.01 7.11 16 40 H 0.01 0.43 8.02 -2.39 -0.02 0.41 16 41 H 0.07 3.64 4.08 -2.72 -0.01 3.63 16 42 H 0.27 13.53 8.32 -92.70 -0.77 12.76 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.23 7.48 -2.38 -0.02 2.21 16 45 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 47 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.41 8.77 8.80 -92.71 -0.82 7.95 16 Total: -1.00 -68.04 366.20 3.13 -64.91 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.13 Total: 37.06 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.15 Total: 7.94 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -4.10 Total: -96.97 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.08 Total: -56.59 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -68.04 3.13 -64.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601040321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.201 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds