Wall clock time and date at job start Tue Mar 31 2020 10:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46966 * 2 1 4 4 C 1.52993 * 109.47233 * 306.33735 * 3 2 1 5 5 C 1.53001 * 109.46872 * 293.43714 * 4 3 2 6 6 C 1.53000 * 109.47289 * 66.33891 * 3 2 1 7 7 N 1.46498 * 109.47396 * 64.99563 * 6 3 2 8 8 C 1.46504 * 119.99999 * 90.00191 * 7 6 3 9 9 C 1.50702 * 109.46650 * 70.89335 * 8 7 6 10 10 H 1.08005 * 119.99443 * 244.19676 * 9 8 7 11 11 C 1.37871 * 120.00181 * 63.92571 * 9 8 7 12 12 N 1.31513 * 120.00162 * 354.41689 * 11 9 8 13 13 Si 1.86799 * 120.00115 * 174.41405 * 11 9 8 14 14 H 1.48499 * 109.47013 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46755 * 119.99899 * 13 11 9 16 16 H 1.48503 * 109.47596 * 240.00003 * 13 11 9 17 17 C 1.34774 * 120.00099 * 270.00325 * 7 6 3 18 18 O 1.21281 * 120.00168 * 1.41698 * 17 7 6 19 19 C 1.50704 * 119.99953 * 181.41782 * 17 7 6 20 20 C 1.53008 * 109.47105 * 184.67547 * 19 17 7 21 21 H 1.09000 * 110.21094 * 54.29997 * 20 19 17 22 22 C 1.54478 * 110.24559 * 176.22889 * 20 19 17 23 23 C 1.54627 * 101.76443 * 93.58661 * 22 20 19 24 24 C 1.51277 * 104.19733 * 24.79840 * 23 22 20 25 25 O 1.21277 * 124.94465 * 163.72486 * 24 23 22 26 26 N 1.34628 * 110.14804 * 343.76786 * 24 23 22 27 27 H 1.09003 * 109.46930 * 186.17873 * 1 2 3 28 28 H 1.09001 * 109.47226 * 306.17904 * 1 2 3 29 29 H 1.08999 * 109.46882 * 66.18555 * 1 2 3 30 30 H 1.09000 * 109.47330 * 239.99912 * 2 1 3 31 31 H 1.09005 * 109.46876 * 119.99790 * 2 1 3 32 32 H 1.09002 * 109.47209 * 186.33167 * 3 2 1 33 33 H 1.08998 * 109.47208 * 53.43372 * 4 3 2 34 34 H 1.08995 * 109.47158 * 173.44273 * 4 3 2 35 35 H 1.09003 * 109.47314 * 305.34288 * 5 4 3 36 36 H 1.08993 * 109.47251 * 65.34683 * 5 4 3 37 37 H 1.09003 * 109.47411 * 185.34641 * 5 4 3 38 38 H 1.09012 * 109.46809 * 304.99929 * 6 3 2 39 39 H 1.09000 * 109.47562 * 185.00359 * 6 3 2 40 40 H 1.09004 * 109.46780 * 310.89774 * 8 7 6 41 41 H 1.08997 * 109.47311 * 190.89423 * 8 7 6 42 42 H 0.97000 * 120.00154 * 185.00200 * 12 11 9 43 43 H 1.08995 * 109.47259 * 304.67743 * 19 17 7 44 44 H 1.09003 * 109.47213 * 64.68338 * 19 17 7 45 45 H 1.09000 * 110.96924 * 211.70867 * 22 20 19 46 46 H 1.09005 * 110.97024 * 335.43218 * 22 20 19 47 47 H 1.08997 * 110.48847 * 143.48109 * 23 22 20 48 48 H 1.09005 * 110.48301 * 266.12141 * 23 22 20 49 49 H 0.96994 * 124.46876 * 179.53475 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4041 2.2082 -1.1619 5 6 1.9102 1.6359 -2.4875 6 6 1.6641 2.1163 1.3212 7 7 2.3680 1.4564 2.4236 8 6 3.6895 1.9335 2.8389 9 6 3.5487 3.2675 3.5259 10 1 3.9928 4.1495 3.0885 11 6 2.8483 3.3628 4.7096 12 7 2.2108 2.3144 5.1828 13 14 2.8049 4.9812 5.6414 14 1 3.5953 5.9988 4.9031 15 1 1.3989 5.4426 5.7667 16 1 3.3853 4.7891 6.9947 17 6 1.8000 0.4103 3.0556 18 8 0.7175 -0.0010 2.6951 19 6 2.5099 -0.2483 4.2103 20 6 1.7123 -1.4709 4.6690 21 1 1.5318 -2.1400 3.8277 22 6 2.4714 -2.2145 5.7902 23 6 1.8550 -1.5836 7.0603 24 6 0.4939 -1.0999 6.6111 25 8 -0.4166 -0.7998 7.3539 26 7 0.4392 -1.0517 5.2668 27 1 -0.3633 -1.0217 0.1106 28 1 -0.3634 0.6066 0.8295 29 1 -0.3633 0.4149 -0.9402 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.1241 1.4446 -0.1133 33 1 0.3199 2.1078 -1.1132 34 1 1.6749 3.2618 -1.0942 35 1 3.0001 1.6492 -2.4966 36 1 1.5585 0.6102 -2.5983 37 1 1.5327 2.2405 -3.3122 38 1 0.5883 2.0356 1.4771 39 1 1.9483 3.1681 1.2865 40 1 4.3286 2.0417 1.9626 41 1 4.1352 1.2155 3.5273 42 1 1.6591 2.3995 5.9760 43 1 3.5050 -0.5613 3.8943 44 1 2.5963 0.4593 5.0350 45 1 2.2735 -3.2856 5.7513 46 1 3.5417 -2.0153 5.7352 47 1 1.7538 -2.3312 7.8470 48 1 2.4630 -0.7467 7.4040 49 1 -0.3397 -0.7763 4.7586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826555239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:32 Heat of formation + Delta-G solvation = -93.309326 kcal Electronic energy + Delta-G solvation = -28359.337944 eV Core-core repulsion = 24706.549301 eV Total energy + Delta-G solvation = -3652.788644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.96946 -38.87041 -36.76093 -35.76454 -34.58639 -32.21962 -30.78034 -30.75468 -29.97881 -28.23336 -27.02815 -25.18800 -23.63793 -22.99285 -22.54383 -20.68708 -19.91758 -18.63461 -17.99679 -16.94505 -16.50630 -15.98441 -15.53557 -15.34108 -14.98797 -14.68713 -14.42327 -14.29404 -13.64896 -13.23474 -13.11364 -13.04372 -12.65938 -12.51308 -12.37676 -12.21320 -12.15495 -12.00521 -11.71238 -11.61961 -11.36104 -11.12721 -11.01703 -10.96318 -10.80936 -10.74575 -10.56919 -10.37421 -10.06979 -9.93264 -9.87943 -9.69174 -9.66913 -9.32460 -8.75899 -8.47839 -8.37115 -7.22540 -6.21066 -4.41985 3.15848 3.18018 3.27692 3.28650 3.98726 4.05236 4.23339 4.32628 4.82312 4.87081 5.08584 5.15251 5.24524 5.30284 5.36781 5.49653 5.61796 5.75590 5.79288 5.83087 5.92121 5.95380 6.04070 6.08331 6.10954 6.14270 6.21853 6.24277 6.26622 6.29505 6.37034 6.42651 6.52563 6.60337 6.66044 6.76252 6.81041 6.91257 7.05269 7.12340 7.25625 7.47428 7.69398 7.73188 7.87862 8.04097 8.64557 8.86736 8.90002 9.32134 9.57411 10.72963 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.006289 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.616654 B = 4450.917790 C = 6335.158090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.101 4.101 4 C -0.120 4.120 5 C -0.148 4.148 6 C 0.130 3.870 7 N -0.578 5.578 8 C 0.226 3.774 9 C -0.537 4.537 10 H 0.059 0.941 11 C 0.078 3.922 12 N -0.871 5.871 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.281 1.281 17 C 0.545 3.455 18 O -0.592 6.592 19 C -0.174 4.174 20 C 0.150 3.850 21 H 0.078 0.922 22 C -0.128 4.128 23 C -0.154 4.154 24 C 0.519 3.481 25 O -0.558 6.558 26 N -0.700 5.700 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.020 0.980 41 H 0.046 0.954 42 H 0.267 0.733 43 H 0.072 0.928 44 H 0.166 0.834 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 -6.762 -6.301 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C -0.121 4.121 4 C -0.158 4.158 5 C -0.205 4.205 6 C 0.006 3.994 7 N -0.307 5.307 8 C 0.106 3.894 9 C -0.575 4.575 10 H 0.077 0.923 11 C -0.126 4.126 12 N -0.509 5.509 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.207 1.207 17 C 0.336 3.664 18 O -0.475 6.475 19 C -0.214 4.214 20 C 0.044 3.956 21 H 0.096 0.904 22 C -0.166 4.166 23 C -0.194 4.194 24 C 0.305 3.695 25 O -0.437 6.437 26 N -0.354 5.354 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.183 0.817 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.122 0.878 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.190 -6.890 -5.867 9.311 hybrid contribution -0.245 1.215 0.231 1.261 sum 1.945 -5.675 -5.636 8.231 Atomic orbital electron populations 1.21742 0.95976 1.01087 1.00741 1.21415 0.96416 0.95919 1.00563 1.21595 0.99590 0.95742 0.95150 1.21564 1.00818 0.99246 0.94164 1.21761 1.00849 1.00802 0.97089 1.21142 0.97354 0.96042 0.84892 1.48350 1.20596 1.29906 1.31852 1.19395 0.80625 0.95465 0.93893 1.21515 1.35310 0.95031 1.05651 0.92256 1.24988 0.94398 0.96633 0.96551 1.69344 1.29196 1.28387 1.23954 0.86479 0.77915 0.83465 0.79784 1.19812 1.21028 1.20718 1.20047 0.85215 0.79463 0.81695 1.90488 1.22874 1.66224 1.67963 1.22860 0.97211 0.98735 1.02628 1.21366 0.83663 0.95453 0.95140 0.90420 1.22635 1.00847 0.99402 0.93722 1.22287 0.95702 1.02531 0.98904 1.20843 0.89196 0.76555 0.82871 1.90683 1.43162 1.51818 1.58048 1.46203 1.15715 1.66817 1.06626 0.94252 0.90775 0.94549 0.94122 0.91563 0.91942 0.91661 0.92399 0.93086 0.92847 0.93474 0.91439 0.91426 0.96206 0.93635 0.92302 0.91017 0.81728 0.90632 0.89333 0.89063 0.87759 0.74622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.15 37.16 0.30 -1.91 16 2 C -0.11 -1.69 4.83 -26.73 -0.13 -1.82 16 3 C -0.10 -1.61 2.35 -90.62 -0.21 -1.82 16 4 C -0.12 -1.63 5.07 -26.73 -0.14 -1.77 16 5 C -0.15 -1.73 9.57 37.16 0.36 -1.38 16 6 C 0.13 2.48 4.81 -4.04 -0.02 2.47 16 7 N -0.58 -11.88 2.14 -175.05 -0.37 -12.26 16 8 C 0.23 4.81 5.63 -5.19 -0.03 4.78 16 9 C -0.54 -12.79 8.91 -34.44 -0.31 -13.10 16 10 H 0.06 1.43 7.82 -52.48 -0.41 1.02 16 11 C 0.08 1.90 5.42 -17.82 -0.10 1.80 16 12 N -0.87 -21.27 8.56 55.43 0.47 -20.80 16 13 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.55 11.15 5.18 -10.98 -0.06 11.09 16 18 O -0.59 -12.53 10.61 5.56 0.06 -12.47 16 19 C -0.17 -3.18 3.56 -27.88 -0.10 -3.28 16 20 C 0.15 2.37 3.01 -67.01 -0.20 2.16 16 21 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 22 C -0.13 -1.59 6.70 -25.10 -0.17 -1.76 16 23 C -0.15 -2.21 6.86 -26.74 -0.18 -2.39 16 24 C 0.52 9.76 8.44 -10.77 -0.09 9.67 16 25 O -0.56 -12.64 18.03 5.56 0.10 -12.54 16 26 N -0.70 -12.63 5.48 -52.71 -0.29 -12.92 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.37 4.95 -51.93 -0.26 1.11 16 29 H 0.04 0.51 6.57 -51.93 -0.34 0.17 16 30 H 0.04 0.59 7.05 -51.93 -0.37 0.22 16 31 H 0.07 1.20 5.48 -51.93 -0.28 0.92 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.90 6.09 -51.93 -0.32 0.58 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.62 7.02 -51.93 -0.36 0.26 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.39 5.70 -51.92 -0.30 1.10 16 39 H 0.07 1.35 7.73 -51.93 -0.40 0.95 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.97 5.81 -51.93 -0.30 0.66 16 42 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 43 H 0.07 1.19 7.24 -51.93 -0.38 0.81 16 44 H 0.17 3.46 4.83 -51.93 -0.25 3.21 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.97 7.88 -51.93 -0.41 0.56 16 47 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 49 H 0.41 8.04 8.13 -40.82 -0.33 7.71 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -26.92 366.10 -8.67 -35.59 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.06 Total: 12.31 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.07 Total: 2.76 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.19 Total: -45.98 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.16 Total: -25.01 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.92 -8.67 -35.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826555239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.721 kcal (2) G-P(sol) polarization free energy of solvation -26.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds