Wall clock time and date at job start Tue Mar 31 2020 10:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46966 * 2 1 4 4 C 1.52993 * 109.47233 * 306.33735 * 3 2 1 5 5 C 1.53001 * 109.46872 * 293.43714 * 4 3 2 6 6 C 1.53000 * 109.47289 * 66.33891 * 3 2 1 7 7 N 1.46498 * 109.47396 * 64.99563 * 6 3 2 8 8 C 1.46504 * 119.99999 * 90.00191 * 7 6 3 9 9 C 1.50702 * 109.46650 * 70.89335 * 8 7 6 10 10 H 1.08005 * 119.99443 * 244.19676 * 9 8 7 11 11 C 1.37871 * 120.00181 * 63.92571 * 9 8 7 12 12 N 1.31513 * 120.00162 * 354.41689 * 11 9 8 13 13 Si 1.86799 * 120.00115 * 174.41405 * 11 9 8 14 14 H 1.48499 * 109.47013 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46755 * 119.99899 * 13 11 9 16 16 H 1.48503 * 109.47596 * 240.00003 * 13 11 9 17 17 C 1.34774 * 120.00099 * 270.00325 * 7 6 3 18 18 O 1.21281 * 120.00168 * 1.41698 * 17 7 6 19 19 C 1.50704 * 119.99953 * 181.41782 * 17 7 6 20 20 C 1.53008 * 109.47105 * 184.67547 * 19 17 7 21 21 H 1.09000 * 110.21094 * 54.29997 * 20 19 17 22 22 C 1.54478 * 110.24559 * 176.22889 * 20 19 17 23 23 C 1.54627 * 101.76443 * 93.58661 * 22 20 19 24 24 C 1.51277 * 104.19733 * 24.79840 * 23 22 20 25 25 O 1.21277 * 124.94465 * 163.72486 * 24 23 22 26 26 N 1.34628 * 110.14804 * 343.76786 * 24 23 22 27 27 H 1.09003 * 109.46930 * 186.17873 * 1 2 3 28 28 H 1.09001 * 109.47226 * 306.17904 * 1 2 3 29 29 H 1.08999 * 109.46882 * 66.18555 * 1 2 3 30 30 H 1.09000 * 109.47330 * 239.99912 * 2 1 3 31 31 H 1.09005 * 109.46876 * 119.99790 * 2 1 3 32 32 H 1.09002 * 109.47209 * 186.33167 * 3 2 1 33 33 H 1.08998 * 109.47208 * 53.43372 * 4 3 2 34 34 H 1.08995 * 109.47158 * 173.44273 * 4 3 2 35 35 H 1.09003 * 109.47314 * 305.34288 * 5 4 3 36 36 H 1.08993 * 109.47251 * 65.34683 * 5 4 3 37 37 H 1.09003 * 109.47411 * 185.34641 * 5 4 3 38 38 H 1.09012 * 109.46809 * 304.99929 * 6 3 2 39 39 H 1.09000 * 109.47562 * 185.00359 * 6 3 2 40 40 H 1.09004 * 109.46780 * 310.89774 * 8 7 6 41 41 H 1.08997 * 109.47311 * 190.89423 * 8 7 6 42 42 H 0.97000 * 120.00154 * 185.00200 * 12 11 9 43 43 H 1.08995 * 109.47259 * 304.67743 * 19 17 7 44 44 H 1.09003 * 109.47213 * 64.68338 * 19 17 7 45 45 H 1.09000 * 110.96924 * 211.70867 * 22 20 19 46 46 H 1.09005 * 110.97024 * 335.43218 * 22 20 19 47 47 H 1.08997 * 110.48847 * 143.48109 * 23 22 20 48 48 H 1.09005 * 110.48301 * 266.12141 * 23 22 20 49 49 H 0.96994 * 124.46876 * 179.53475 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4041 2.2082 -1.1619 5 6 1.9102 1.6359 -2.4875 6 6 1.6641 2.1163 1.3212 7 7 2.3680 1.4564 2.4236 8 6 3.6895 1.9335 2.8389 9 6 3.5487 3.2675 3.5259 10 1 3.9928 4.1495 3.0885 11 6 2.8483 3.3628 4.7096 12 7 2.2108 2.3144 5.1828 13 14 2.8049 4.9812 5.6414 14 1 3.5953 5.9988 4.9031 15 1 1.3989 5.4426 5.7667 16 1 3.3853 4.7891 6.9947 17 6 1.8000 0.4103 3.0556 18 8 0.7175 -0.0010 2.6951 19 6 2.5099 -0.2483 4.2103 20 6 1.7123 -1.4709 4.6690 21 1 1.5318 -2.1400 3.8277 22 6 2.4714 -2.2145 5.7902 23 6 1.8550 -1.5836 7.0603 24 6 0.4939 -1.0999 6.6111 25 8 -0.4166 -0.7998 7.3539 26 7 0.4392 -1.0517 5.2668 27 1 -0.3633 -1.0217 0.1106 28 1 -0.3634 0.6066 0.8295 29 1 -0.3633 0.4149 -0.9402 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.1241 1.4446 -0.1133 33 1 0.3199 2.1078 -1.1132 34 1 1.6749 3.2618 -1.0942 35 1 3.0001 1.6492 -2.4966 36 1 1.5585 0.6102 -2.5983 37 1 1.5327 2.2405 -3.3122 38 1 0.5883 2.0356 1.4771 39 1 1.9483 3.1681 1.2865 40 1 4.3286 2.0417 1.9626 41 1 4.1352 1.2155 3.5273 42 1 1.6591 2.3995 5.9760 43 1 3.5050 -0.5613 3.8943 44 1 2.5963 0.4593 5.0350 45 1 2.2735 -3.2856 5.7513 46 1 3.5417 -2.0153 5.7352 47 1 1.7538 -2.3312 7.8470 48 1 2.4630 -0.7467 7.4040 49 1 -0.3397 -0.7763 4.7586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826555239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:31 Heat of formation + Delta-G solvation = -107.878887 kcal Electronic energy + Delta-G solvation = -28359.969728 eV Core-core repulsion = 24706.549301 eV Total energy + Delta-G solvation = -3653.420427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39005 -40.38129 -38.15697 -37.21167 -36.27147 -33.96981 -32.04278 -31.94236 -31.38394 -29.78762 -28.60578 -26.47882 -25.05641 -24.62255 -23.79845 -21.93460 -21.29246 -19.94845 -19.60000 -18.44808 -18.18966 -17.52514 -17.04635 -16.76107 -16.47103 -16.21749 -15.86985 -15.75950 -15.07531 -14.63902 -14.47090 -14.35713 -14.16677 -13.87618 -13.74659 -13.67293 -13.42339 -13.31630 -13.23997 -12.91197 -12.87765 -12.69494 -12.47532 -12.37400 -12.16236 -11.94592 -11.92566 -11.75613 -11.57111 -11.50204 -11.26473 -11.16155 -11.10660 -10.82604 -10.62493 -10.04868 -9.86718 -8.87244 -8.05854 -6.31757 1.35639 1.44302 1.50065 1.72116 2.34377 2.43462 2.65890 2.74606 3.26026 3.59182 3.74264 4.02061 4.05442 4.10383 4.13578 4.28636 4.44158 4.49292 4.56220 4.64248 4.68807 4.76249 4.81414 4.84437 4.89493 4.92533 4.96002 4.98589 5.06908 5.10339 5.14217 5.17086 5.22182 5.22728 5.33951 5.41199 5.42242 5.49511 5.56570 5.63627 5.75813 5.92672 6.02014 6.19371 6.29215 6.30957 6.75606 7.25944 7.38724 7.43363 7.95993 8.80539 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.006289 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.616654 B = 4450.917790 C = 6335.158090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.143 4.143 6 C 0.131 3.869 7 N -0.583 5.583 8 C 0.230 3.770 9 C -0.546 4.546 10 H 0.052 0.948 11 C 0.044 3.956 12 N -0.874 5.874 13 Si 0.940 3.060 14 H -0.269 1.269 15 H -0.300 1.300 16 H -0.279 1.279 17 C 0.536 3.464 18 O -0.603 6.603 19 C -0.171 4.171 20 C 0.149 3.851 21 H 0.085 0.915 22 C -0.112 4.112 23 C -0.146 4.146 24 C 0.505 3.495 25 O -0.607 6.607 26 N -0.703 5.703 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.031 0.969 41 H 0.048 0.952 42 H 0.256 0.744 43 H 0.091 0.909 44 H 0.145 0.855 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.102 0.898 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -7.994 -7.423 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 C -0.109 4.109 4 C -0.155 4.155 5 C -0.200 4.200 6 C 0.007 3.993 7 N -0.312 5.312 8 C 0.110 3.890 9 C -0.585 4.585 10 H 0.070 0.930 11 C -0.159 4.159 12 N -0.511 5.511 13 Si 0.768 3.232 14 H -0.194 1.194 15 H -0.227 1.227 16 H -0.205 1.205 17 C 0.327 3.673 18 O -0.488 6.488 19 C -0.211 4.211 20 C 0.043 3.957 21 H 0.103 0.897 22 C -0.149 4.149 23 C -0.186 4.186 24 C 0.294 3.706 25 O -0.490 6.490 26 N -0.354 5.354 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.123 0.877 46 H 0.129 0.871 47 H 0.135 0.865 48 H 0.120 0.880 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.752 -8.131 -7.014 11.375 hybrid contribution -0.754 1.647 0.519 1.884 sum 2.999 -6.484 -6.496 9.656 Atomic orbital electron populations 1.21632 0.96066 1.00477 1.00499 1.21338 0.96191 0.95722 1.00413 1.21473 0.99651 0.95757 0.94062 1.21537 1.00532 0.99077 0.94350 1.21718 1.01074 1.01084 0.96107 1.21158 0.95999 0.95685 0.86421 1.48317 1.20468 1.30077 1.32340 1.19313 0.81090 0.94377 0.94241 1.21710 1.35067 0.95918 1.05821 0.92997 1.25458 0.94712 0.98394 0.97305 1.69545 1.29277 1.28830 1.23487 0.85802 0.76764 0.81566 0.79086 1.19381 1.22676 1.20523 1.20510 0.85241 0.79508 0.82056 1.90484 1.23351 1.66588 1.68347 1.22775 0.98447 0.99107 1.00746 1.21530 0.82735 0.94756 0.96667 0.89713 1.22690 1.01395 1.00405 0.90456 1.22307 0.92554 1.03129 1.00567 1.21693 0.90383 0.75801 0.82750 1.90642 1.45239 1.54027 1.59125 1.46407 1.16141 1.66100 1.06717 0.94401 0.93701 0.92614 0.92019 0.93800 0.91936 0.91889 0.92387 0.92730 0.92528 0.91897 0.93514 0.92789 0.95016 0.93386 0.93468 0.89077 0.83858 0.87666 0.87088 0.86528 0.87974 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.15 71.98 0.59 -3.46 16 2 C -0.10 -3.04 4.83 30.59 0.15 -2.89 16 3 C -0.09 -2.76 2.35 -10.80 -0.03 -2.79 16 4 C -0.12 -3.00 5.07 30.59 0.16 -2.84 16 5 C -0.14 -2.94 9.57 71.98 0.69 -2.26 16 6 C 0.13 5.08 4.81 86.38 0.42 5.49 16 7 N -0.58 -23.98 2.14 -826.13 -1.77 -25.75 16 8 C 0.23 9.66 5.63 85.63 0.48 10.14 16 9 C -0.55 -25.98 8.91 25.60 0.23 -25.75 16 10 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 11 C 0.04 2.13 5.42 84.65 0.46 2.59 16 12 N -0.87 -43.08 8.56 21.45 0.18 -42.90 16 13 Si 0.94 41.02 29.54 68.60 2.03 43.04 16 14 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 C 0.54 21.89 5.18 87.66 0.45 22.34 16 18 O -0.60 -25.88 10.61 -3.03 -0.03 -25.91 16 19 C -0.17 -6.05 3.56 29.85 0.11 -5.94 16 20 C 0.15 4.46 3.01 45.45 0.14 4.59 16 21 H 0.08 2.45 8.02 -2.39 -0.02 2.43 16 22 C -0.11 -2.40 6.70 31.65 0.21 -2.19 16 23 C -0.15 -3.87 6.86 30.59 0.21 -3.67 16 24 C 0.51 19.00 8.44 87.86 0.74 19.74 16 25 O -0.61 -28.21 18.03 -3.02 -0.05 -28.26 16 26 N -0.70 -25.44 5.48 -439.16 -2.41 -27.84 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 1.67 4.95 -2.39 -0.01 1.66 16 29 H 0.05 1.49 6.57 -2.39 -0.02 1.48 16 30 H 0.06 1.64 7.05 -2.39 -0.02 1.62 16 31 H 0.04 1.55 5.48 -2.38 -0.01 1.54 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.64 6.09 -2.39 -0.01 1.63 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.14 7.02 -2.39 -0.02 1.12 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.99 5.70 -2.38 -0.01 1.98 16 39 H 0.05 2.19 7.73 -2.39 -0.02 2.17 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.98 5.81 -2.39 -0.01 1.97 16 42 H 0.26 13.07 8.32 -92.71 -0.77 12.30 16 43 H 0.09 2.83 7.24 -2.39 -0.02 2.81 16 44 H 0.14 5.94 4.83 -2.39 -0.01 5.93 16 45 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.11 1.96 7.88 -2.38 -0.02 1.94 16 47 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 49 H 0.40 16.09 8.13 -92.71 -0.75 15.34 16 Total: -1.00 -59.53 366.10 3.14 -56.39 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.20 Total: 38.13 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.00 Total: 13.11 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -3.99 Total: -96.49 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.09 Total: -54.18 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -59.53 3.14 -56.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826555239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.491 kcal (2) G-P(sol) polarization free energy of solvation -59.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds