Wall clock time and date at job start Tue Mar 31 2020 10:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 120.00223 * 2 1 4 4 N 1.34780 * 119.99688 * 179.71933 * 2 1 3 5 5 C 1.46501 * 119.99689 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47262 * 57.67979 * 5 4 2 7 7 C 1.50706 * 109.46979 * 177.67777 * 5 4 2 8 8 O 1.21277 * 120.00308 * 134.00510 * 7 5 4 9 9 N 1.34773 * 119.99872 * 314.00151 * 7 5 4 10 10 C 1.46933 * 120.63208 * 3.27631 * 9 7 5 11 11 C 1.52763 * 109.00609 * 233.58077 * 10 9 7 12 12 C 1.53031 * 109.38581 * 305.58469 * 11 10 9 13 13 C 1.50697 * 109.46381 * 181.26186 * 12 11 10 14 14 H 1.08010 * 119.99952 * 274.79035 * 13 12 11 15 15 C 1.37876 * 120.00110 * 94.78578 * 13 12 11 16 16 N 1.31513 * 120.00050 * 184.74202 * 15 13 12 17 17 Si 1.86802 * 119.99995 * 4.74757 * 15 13 12 18 18 H 1.48493 * 109.47206 * 94.68828 * 17 15 13 19 19 H 1.48496 * 109.46930 * 214.69022 * 17 15 13 20 20 H 1.48502 * 109.46720 * 334.68578 * 17 15 13 21 21 C 1.53048 * 109.53761 * 61.24162 * 12 11 10 22 22 C 1.46926 * 120.63293 * 183.55325 * 9 7 5 23 23 C 1.52999 * 109.47152 * 297.67312 * 5 4 2 24 24 C 1.52999 * 109.46971 * 174.69576 * 23 5 4 25 25 C 1.52992 * 109.47226 * 294.70082 * 23 5 4 26 26 H 1.09000 * 109.46664 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47202 * 120.00627 * 1 2 3 28 28 H 1.09001 * 109.47038 * 240.00759 * 1 2 3 29 29 H 0.96996 * 119.99969 * 359.97438 * 4 2 1 30 30 H 1.08998 * 109.48026 * 59.99821 * 6 5 4 31 31 H 1.09002 * 109.47251 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46925 * 299.99455 * 6 5 4 33 33 H 1.08998 * 109.58094 * 353.41527 * 10 9 7 34 34 H 1.08996 * 109.58601 * 113.84086 * 10 9 7 35 35 H 1.09003 * 109.56202 * 185.55046 * 11 10 9 36 36 H 1.08994 * 109.35884 * 65.49971 * 11 10 9 37 37 H 1.08997 * 109.46707 * 301.22384 * 12 11 10 38 38 H 0.97002 * 120.00291 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.50068 * 178.68288 * 21 12 11 40 40 H 1.09004 * 109.52025 * 58.60152 * 21 12 11 41 41 H 1.09000 * 109.58604 * 246.16343 * 22 9 7 42 42 H 1.09001 * 109.58316 * 6.43626 * 22 9 7 43 43 H 1.08999 * 109.46553 * 54.70113 * 23 5 4 44 44 H 1.08998 * 109.47080 * 55.90086 * 24 23 5 45 45 H 1.09000 * 109.47349 * 175.89753 * 24 23 5 46 46 H 1.09000 * 109.47822 * 295.89881 * 24 23 5 47 47 H 1.08996 * 109.47332 * 60.00030 * 25 23 5 48 48 H 1.09008 * 109.47128 * 179.97438 * 25 23 5 49 49 H 1.08999 * 109.47380 * 299.99525 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0057 5 6 3.6459 -1.1673 0.0063 6 6 4.1554 -0.3904 1.2218 7 6 4.1482 -2.5867 0.0707 8 8 5.0385 -2.9491 -0.6688 9 7 3.6080 -3.4534 0.9501 10 6 2.4811 -3.0503 1.8025 11 6 2.8352 -3.3320 3.2615 12 6 3.2432 -4.7994 3.4110 13 6 3.5632 -5.0870 4.8552 14 1 4.5516 -4.8838 5.2402 15 6 2.5941 -5.6095 5.6852 16 7 2.8437 -5.7734 6.9660 17 14 0.9265 -6.0848 4.9904 18 1 0.9245 -7.5310 4.6535 19 1 -0.1270 -5.8104 6.0004 20 1 0.6562 -5.2906 3.7651 21 6 4.4777 -5.0776 2.5501 22 6 4.1386 -4.8174 1.0791 23 6 4.1564 -0.5033 -1.2741 24 6 5.6805 -0.3840 -1.2139 25 6 3.7586 -1.3529 -2.4827 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 -0.3633 -0.5137 0.8901 29 1 1.6958 -2.0072 0.0102 30 1 3.7918 -0.8633 2.1341 31 1 5.2454 -0.3900 1.2220 32 1 3.7922 0.6363 1.1752 33 1 2.2884 -1.9852 1.6737 34 1 1.5934 -3.6202 1.5282 35 1 1.9701 -3.1289 3.8929 36 1 3.6641 -2.6914 3.5623 37 1 2.4227 -5.4394 3.0866 38 1 2.1621 -6.1413 7.5498 39 1 4.7818 -6.1168 2.6751 40 1 5.2916 -4.4209 2.8575 41 1 3.3888 -5.5343 0.7446 42 1 5.0377 -4.9187 0.4712 43 1 3.7176 0.4901 -1.3680 44 1 6.1158 -1.3692 -1.0469 45 1 6.0507 0.0218 -2.1554 46 1 5.9611 0.2804 -0.3966 47 1 2.6728 -1.4378 -2.5255 48 1 4.1219 -0.8796 -3.3950 49 1 4.1973 -2.3462 -2.3888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935317860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:18 Heat of formation + Delta-G solvation = -65.239607 kcal Electronic energy + Delta-G solvation = -28608.655854 eV Core-core repulsion = 24957.084405 eV Total energy + Delta-G solvation = -3651.571449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44566 -39.27767 -37.59692 -36.04555 -34.16958 -33.10132 -31.68228 -30.94726 -30.34182 -29.11785 -27.11083 -26.49656 -24.48971 -22.98914 -22.76004 -21.48857 -20.34947 -19.43397 -18.70945 -17.55305 -17.05812 -16.76637 -15.87050 -15.51409 -15.18391 -15.10363 -14.48215 -14.17918 -14.08328 -13.77573 -13.50666 -13.34894 -13.14922 -12.99023 -12.83550 -12.72709 -12.54080 -12.30217 -12.18784 -12.09575 -11.91164 -11.67816 -11.56885 -11.18563 -11.06188 -10.89252 -10.87573 -10.79645 -10.61380 -10.05737 -10.04973 -9.76623 -9.48160 -9.25931 -9.24326 -8.88175 -8.60281 -8.30207 -6.15899 -4.15541 2.38430 2.48904 3.07383 3.17518 3.19221 3.25795 3.28858 4.31112 4.32071 4.61443 4.71198 4.87038 5.04094 5.09316 5.15764 5.20177 5.25982 5.37990 5.50461 5.54356 5.56973 5.62954 5.68559 5.75388 5.78757 5.85029 5.88517 5.91986 5.93440 6.02901 6.10072 6.14322 6.20325 6.24327 6.28529 6.41799 6.54769 6.61240 6.65484 6.73644 6.82237 7.20259 7.26506 7.34524 7.56578 7.67628 8.01613 8.23816 8.44163 8.89932 9.46665 10.97553 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017427 B = 0.004673 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.274633 B = 5990.254821 C = 6783.256969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.513 3.487 3 O -0.536 6.536 4 N -0.724 5.724 5 C 0.169 3.831 6 C -0.170 4.170 7 C 0.516 3.484 8 O -0.530 6.530 9 N -0.595 5.595 10 C 0.070 3.930 11 C -0.123 4.123 12 C 0.013 3.987 13 C -0.512 4.512 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.877 3.123 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.262 1.262 21 C -0.117 4.117 22 C 0.106 3.894 23 C -0.085 4.085 24 C -0.159 4.159 25 C -0.155 4.155 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.406 0.594 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.043 0.957 48 H 0.051 0.949 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 8.756 -15.920 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.301 3.699 3 O -0.413 6.413 4 N -0.380 5.380 5 C 0.080 3.920 6 C -0.228 4.228 7 C 0.303 3.697 8 O -0.407 6.407 9 N -0.327 5.327 10 C -0.053 4.053 11 C -0.162 4.162 12 C -0.006 4.006 13 C -0.550 4.550 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.537 5.537 17 Si 0.704 3.296 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.155 4.155 22 C -0.015 4.015 23 C -0.105 4.105 24 C -0.216 4.216 25 C -0.212 4.212 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.243 0.757 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.444 9.225 -16.120 18.890 hybrid contribution -1.322 -0.822 0.013 1.557 sum -4.765 8.403 -16.108 18.782 Atomic orbital electron populations 1.21965 0.91541 1.05679 1.04487 1.20803 0.90550 0.83309 0.75237 1.90664 1.70454 1.31365 1.48823 1.46630 1.06483 1.09477 1.75422 1.20607 0.79868 0.93106 0.98383 1.22385 1.02306 1.02493 0.95626 1.20397 0.82967 0.86282 0.80060 1.90568 1.30952 1.77544 1.41649 1.48248 1.33716 1.13329 1.37422 1.22588 0.88022 1.01416 0.93252 1.22138 1.01356 1.01113 0.91610 1.19183 0.93564 0.91669 0.96168 1.20978 0.99643 1.42244 0.92091 0.91033 1.25090 0.98294 0.95160 0.94610 1.69914 1.34760 1.45189 1.03842 0.86857 0.84411 0.79265 0.79057 1.20442 1.21531 1.18695 1.21957 1.00219 1.01565 0.91805 1.21840 0.99260 0.81234 0.99206 1.21243 0.97145 0.99867 0.92237 1.22138 0.94399 1.03986 1.01075 1.22018 1.00278 1.01924 0.96985 0.88800 0.89436 0.89065 0.75704 0.91313 0.90843 0.88995 0.88484 0.91933 0.91659 0.92298 0.94749 0.92654 0.91242 0.92521 0.92030 0.89844 0.89220 0.89538 0.93076 0.93001 0.93834 0.93023 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 10.32 36.01 0.37 -0.87 16 2 C 0.51 5.58 7.34 -10.98 -0.08 5.50 16 3 O -0.54 -7.62 13.28 5.56 0.07 -7.55 16 4 N -0.72 -7.81 2.54 -48.68 -0.12 -7.93 16 5 C 0.17 2.18 0.12 -132.97 -0.02 2.17 16 6 C -0.17 -2.28 7.60 37.15 0.28 -2.00 16 7 C 0.52 7.62 5.87 -10.98 -0.06 7.55 16 8 O -0.53 -8.83 10.98 5.56 0.06 -8.77 16 9 N -0.59 -8.84 2.97 -173.03 -0.51 -9.35 16 10 C 0.07 0.99 4.10 -3.93 -0.02 0.97 16 11 C -0.12 -2.25 5.28 -26.84 -0.14 -2.39 16 12 C 0.01 0.28 1.69 -91.73 -0.16 0.12 16 13 C -0.51 -13.36 8.86 -34.44 -0.31 -13.67 16 14 H 0.07 2.08 8.06 -52.48 -0.42 1.66 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -26.40 13.96 55.43 0.77 -25.62 16 17 Si 0.88 19.95 27.30 -169.99 -4.64 15.31 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -5.44 6.38 56.52 0.36 -5.08 16 21 C -0.12 -2.16 5.34 -26.61 -0.14 -2.30 16 22 C 0.11 1.67 6.43 -3.71 -0.02 1.65 16 23 C -0.09 -1.10 2.16 -90.62 -0.20 -1.29 16 24 C -0.16 -2.03 8.36 37.16 0.31 -1.72 16 25 C -0.15 -1.90 8.71 37.15 0.32 -1.58 16 26 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.41 3.83 6.49 -40.82 -0.27 3.56 16 30 H 0.07 0.95 6.14 -51.93 -0.32 0.63 16 31 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 32 H 0.09 1.28 5.99 -51.93 -0.31 0.97 16 33 H 0.10 1.21 3.50 -51.93 -0.18 1.02 16 34 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.12 7.85 -51.93 -0.41 0.71 16 37 H 0.03 0.73 5.08 -51.93 -0.26 0.46 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.31 7.02 -51.93 -0.36 0.95 16 43 H 0.09 1.24 6.23 -51.93 -0.32 0.92 16 44 H 0.09 1.26 5.44 -51.93 -0.28 0.98 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.63 6.59 -51.93 -0.34 0.29 16 47 H 0.04 0.49 7.76 -51.93 -0.40 0.09 16 48 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 49 H 0.08 1.09 5.60 -51.93 -0.29 0.80 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -30.51 357.16 -6.85 -37.36 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.91 Total: 7.24 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 0.05 Total: -6.06 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.14 Total: -42.91 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.13 Total: -16.32 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.64 Total: 15.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.51 -6.85 -37.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.877 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds