Wall clock time and date at job start Tue Mar 31 2020 10:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 120.00223 * 2 1 4 4 N 1.34780 * 119.99688 * 179.71933 * 2 1 3 5 5 C 1.46501 * 119.99689 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47262 * 57.67979 * 5 4 2 7 7 C 1.50706 * 109.46979 * 177.67777 * 5 4 2 8 8 O 1.21277 * 120.00308 * 134.00510 * 7 5 4 9 9 N 1.34773 * 119.99872 * 314.00151 * 7 5 4 10 10 C 1.46933 * 120.63208 * 3.27631 * 9 7 5 11 11 C 1.52763 * 109.00609 * 233.58077 * 10 9 7 12 12 C 1.53031 * 109.38581 * 305.58469 * 11 10 9 13 13 C 1.50697 * 109.46381 * 181.26186 * 12 11 10 14 14 H 1.08010 * 119.99952 * 274.79035 * 13 12 11 15 15 C 1.37876 * 120.00110 * 94.78578 * 13 12 11 16 16 N 1.31513 * 120.00050 * 184.74202 * 15 13 12 17 17 Si 1.86802 * 119.99995 * 4.74757 * 15 13 12 18 18 H 1.48493 * 109.47206 * 94.68828 * 17 15 13 19 19 H 1.48496 * 109.46930 * 214.69022 * 17 15 13 20 20 H 1.48502 * 109.46720 * 334.68578 * 17 15 13 21 21 C 1.53048 * 109.53761 * 61.24162 * 12 11 10 22 22 C 1.46926 * 120.63293 * 183.55325 * 9 7 5 23 23 C 1.52999 * 109.47152 * 297.67312 * 5 4 2 24 24 C 1.52999 * 109.46971 * 174.69576 * 23 5 4 25 25 C 1.52992 * 109.47226 * 294.70082 * 23 5 4 26 26 H 1.09000 * 109.46664 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47202 * 120.00627 * 1 2 3 28 28 H 1.09001 * 109.47038 * 240.00759 * 1 2 3 29 29 H 0.96996 * 119.99969 * 359.97438 * 4 2 1 30 30 H 1.08998 * 109.48026 * 59.99821 * 6 5 4 31 31 H 1.09002 * 109.47251 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46925 * 299.99455 * 6 5 4 33 33 H 1.08998 * 109.58094 * 353.41527 * 10 9 7 34 34 H 1.08996 * 109.58601 * 113.84086 * 10 9 7 35 35 H 1.09003 * 109.56202 * 185.55046 * 11 10 9 36 36 H 1.08994 * 109.35884 * 65.49971 * 11 10 9 37 37 H 1.08997 * 109.46707 * 301.22384 * 12 11 10 38 38 H 0.97002 * 120.00291 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.50068 * 178.68288 * 21 12 11 40 40 H 1.09004 * 109.52025 * 58.60152 * 21 12 11 41 41 H 1.09000 * 109.58604 * 246.16343 * 22 9 7 42 42 H 1.09001 * 109.58316 * 6.43626 * 22 9 7 43 43 H 1.08999 * 109.46553 * 54.70113 * 23 5 4 44 44 H 1.08998 * 109.47080 * 55.90086 * 24 23 5 45 45 H 1.09000 * 109.47349 * 175.89753 * 24 23 5 46 46 H 1.09000 * 109.47822 * 295.89881 * 24 23 5 47 47 H 1.08996 * 109.47332 * 60.00030 * 25 23 5 48 48 H 1.09008 * 109.47128 * 179.97438 * 25 23 5 49 49 H 1.08999 * 109.47380 * 299.99525 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0057 5 6 3.6459 -1.1673 0.0063 6 6 4.1554 -0.3904 1.2218 7 6 4.1482 -2.5867 0.0707 8 8 5.0385 -2.9491 -0.6688 9 7 3.6080 -3.4534 0.9501 10 6 2.4811 -3.0503 1.8025 11 6 2.8352 -3.3320 3.2615 12 6 3.2432 -4.7994 3.4110 13 6 3.5632 -5.0870 4.8552 14 1 4.5516 -4.8838 5.2402 15 6 2.5941 -5.6095 5.6852 16 7 2.8437 -5.7734 6.9660 17 14 0.9265 -6.0848 4.9904 18 1 0.9245 -7.5310 4.6535 19 1 -0.1270 -5.8104 6.0004 20 1 0.6562 -5.2906 3.7651 21 6 4.4777 -5.0776 2.5501 22 6 4.1386 -4.8174 1.0791 23 6 4.1564 -0.5033 -1.2741 24 6 5.6805 -0.3840 -1.2139 25 6 3.7586 -1.3529 -2.4827 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 -0.3633 -0.5137 0.8901 29 1 1.6958 -2.0072 0.0102 30 1 3.7918 -0.8633 2.1341 31 1 5.2454 -0.3900 1.2220 32 1 3.7922 0.6363 1.1752 33 1 2.2884 -1.9852 1.6737 34 1 1.5934 -3.6202 1.5282 35 1 1.9701 -3.1289 3.8929 36 1 3.6641 -2.6914 3.5623 37 1 2.4227 -5.4394 3.0866 38 1 2.1621 -6.1413 7.5498 39 1 4.7818 -6.1168 2.6751 40 1 5.2916 -4.4209 2.8575 41 1 3.3888 -5.5343 0.7446 42 1 5.0377 -4.9187 0.4712 43 1 3.7176 0.4901 -1.3680 44 1 6.1158 -1.3692 -1.0469 45 1 6.0507 0.0218 -2.1554 46 1 5.9611 0.2804 -0.3966 47 1 2.6728 -1.4378 -2.5255 48 1 4.1219 -0.8796 -3.3950 49 1 4.1973 -2.3462 -2.3888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935317860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:17 Heat of formation + Delta-G solvation = -84.299016 kcal Electronic energy + Delta-G solvation = -28609.482332 eV Core-core repulsion = 24957.084405 eV Total energy + Delta-G solvation = -3652.397927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.51592 -40.31164 -38.92020 -37.11533 -35.59054 -34.43387 -33.30259 -32.15638 -31.46910 -29.89133 -28.52982 -27.70293 -25.76026 -24.30280 -24.14576 -22.63193 -21.53908 -20.64091 -19.88004 -18.98659 -18.66819 -17.75276 -16.97132 -16.56417 -16.37565 -16.23408 -16.07831 -15.32137 -15.05596 -14.96517 -14.83527 -14.70132 -14.58462 -14.27680 -14.12072 -13.77881 -13.59458 -13.29356 -13.27219 -13.14353 -12.95311 -12.88454 -12.82896 -12.65973 -12.45159 -12.27070 -12.04101 -11.88473 -11.80784 -11.76350 -11.43751 -11.13934 -11.02688 -10.98236 -10.62712 -10.30578 -9.92971 -9.58981 -8.24301 -6.29465 1.30958 1.40356 1.41898 1.53610 1.65916 1.90828 2.24652 2.40287 3.11365 3.23393 3.64374 3.80517 3.93404 4.02830 4.15331 4.21000 4.26808 4.29805 4.39105 4.51939 4.52557 4.59790 4.62577 4.63318 4.73203 4.78669 4.81092 4.82941 4.86162 4.94467 4.97689 5.01836 5.10548 5.11422 5.15962 5.17524 5.23833 5.28199 5.41056 5.45753 5.55440 5.62030 5.71658 5.79742 6.35060 6.38181 6.48253 6.78609 7.04523 7.23059 7.36777 8.93186 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017427 B = 0.004673 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.274633 B = 5990.254821 C = 6783.256969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.510 3.490 3 O -0.573 6.573 4 N -0.718 5.718 5 C 0.174 3.826 6 C -0.165 4.165 7 C 0.518 3.482 8 O -0.548 6.548 9 N -0.597 5.597 10 C 0.078 3.922 11 C -0.120 4.120 12 C 0.013 3.987 13 C -0.515 4.515 14 H 0.018 0.982 15 C 0.005 3.995 16 N -0.957 5.957 17 Si 0.946 3.054 18 H -0.275 1.275 19 H -0.293 1.293 20 H -0.219 1.219 21 C -0.112 4.112 22 C 0.115 3.885 23 C -0.083 4.083 24 C -0.157 4.157 25 C -0.149 4.149 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.416 0.584 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 8.987 -18.730 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.452 6.452 4 N -0.375 5.375 5 C 0.085 3.915 6 C -0.223 4.223 7 C 0.305 3.695 8 O -0.426 6.426 9 N -0.329 5.329 10 C -0.044 4.044 11 C -0.159 4.159 12 C -0.006 4.006 13 C -0.553 4.553 14 H 0.037 0.963 15 C -0.191 4.191 16 N -0.597 5.597 17 Si 0.769 3.231 18 H -0.201 1.201 19 H -0.219 1.219 20 H -0.142 1.142 21 C -0.151 4.151 22 C -0.007 4.007 23 C -0.102 4.102 24 C -0.214 4.214 25 C -0.206 4.206 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.433 9.459 -18.963 22.147 hybrid contribution -0.219 -0.860 0.960 1.307 sum -6.652 8.600 -18.003 21.032 Atomic orbital electron populations 1.21999 0.87999 1.06425 1.06528 1.21556 0.92101 0.82445 0.73882 1.90659 1.71524 1.32637 1.50428 1.46573 1.05351 1.10260 1.75344 1.20435 0.81430 0.91578 0.98078 1.22321 1.02038 1.02290 0.95687 1.20654 0.82464 0.86701 0.79645 1.90577 1.31622 1.77967 1.42443 1.48276 1.33988 1.13050 1.37569 1.22615 0.88498 1.03301 0.89959 1.21964 1.00617 0.98486 0.94844 1.19173 0.94830 0.93715 0.92891 1.21284 0.97400 1.41520 0.95127 0.96343 1.26086 1.03227 0.95145 0.94634 1.70102 1.36529 1.47232 1.05864 0.85755 0.78198 0.79427 0.79743 1.20090 1.21942 1.14154 1.21823 0.98571 1.00840 0.93839 1.21695 1.00184 0.82315 0.96465 1.21207 0.96856 0.99601 0.92569 1.22096 0.94653 1.02944 1.01714 1.21944 1.00910 1.00791 0.96933 0.88818 0.87011 0.87172 0.74497 0.91899 0.91369 0.89384 0.86560 0.88844 0.91817 0.94195 0.93584 0.92768 0.91732 0.94654 0.89646 0.89916 0.89837 0.91305 0.92008 0.92965 0.92668 0.92221 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.32 71.24 0.74 -0.93 16 2 C 0.51 9.52 7.34 87.66 0.64 10.16 16 3 O -0.57 -15.23 13.28 -3.02 -0.04 -15.27 16 4 N -0.72 -13.11 2.54 -426.32 -1.08 -14.20 16 5 C 0.17 4.16 0.12 2.86 0.00 4.16 16 6 C -0.17 -4.29 7.60 71.98 0.55 -3.74 16 7 C 0.52 14.24 5.87 87.66 0.51 14.76 16 8 O -0.55 -17.52 10.98 -3.02 -0.03 -17.55 16 9 N -0.60 -16.13 2.97 -819.73 -2.43 -18.56 16 10 C 0.08 1.92 4.10 86.22 0.35 2.28 16 11 C -0.12 -4.16 5.28 30.53 0.16 -4.00 16 12 C 0.01 0.52 1.69 -11.51 -0.02 0.50 16 13 C -0.52 -27.72 8.86 25.60 0.23 -27.49 16 14 H 0.02 1.14 8.06 -2.91 -0.02 1.12 16 15 C 0.01 0.28 5.47 84.65 0.46 0.75 16 16 N -0.96 -58.31 13.96 21.45 0.30 -58.01 16 17 Si 0.95 39.97 27.30 68.60 1.87 41.84 16 18 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.22 -7.68 6.38 99.48 0.63 -7.05 16 21 C -0.11 -4.10 5.34 30.67 0.16 -3.94 16 22 C 0.12 3.35 6.43 86.36 0.55 3.91 16 23 C -0.08 -1.99 2.16 -10.80 -0.02 -2.02 16 24 C -0.16 -3.89 8.36 71.98 0.60 -3.29 16 25 C -0.15 -3.31 8.71 71.98 0.63 -2.68 16 26 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 27 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.42 5.92 6.49 -92.71 -0.60 5.32 16 30 H 0.06 1.68 6.14 -2.39 -0.01 1.66 16 31 H 0.07 1.80 6.43 -2.39 -0.02 1.79 16 32 H 0.09 2.39 5.99 -2.39 -0.01 2.37 16 33 H 0.12 2.46 3.50 -2.39 -0.01 2.45 16 34 H 0.09 1.83 8.13 -2.39 -0.02 1.81 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.04 1.51 7.85 -2.39 -0.02 1.49 16 37 H 0.05 1.78 5.08 -2.39 -0.01 1.77 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.08 2.46 7.02 -2.39 -0.02 2.44 16 43 H 0.08 2.18 6.23 -2.39 -0.01 2.16 16 44 H 0.07 1.98 5.44 -2.39 -0.01 1.97 16 45 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.05 1.26 6.59 -2.39 -0.02 1.24 16 47 H 0.05 1.08 7.76 -2.39 -0.02 1.06 16 48 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.06 1.62 5.60 -2.39 -0.01 1.60 16 Total: -1.00 -70.01 357.16 4.41 -65.60 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.28 Total: 27.71 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 5.55 Total: -11.56 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -3.22 Total: -90.77 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.07 Total: -32.82 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.87 Total: 41.84 kcal Total: -70.01 4.41 -65.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.700 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds