Wall clock time and date at job start Tue Mar 31 2020 10:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47361 * 2 1 4 4 C 1.53003 * 109.46941 * 304.27679 * 3 2 1 5 5 C 1.53002 * 109.47159 * 295.37741 * 4 3 2 6 6 C 1.50703 * 109.47500 * 64.27489 * 3 2 1 7 7 O 1.21276 * 120.00170 * 248.01143 * 6 3 2 8 8 N 1.34777 * 119.99692 * 68.00284 * 6 3 2 9 9 C 1.47087 * 125.62919 * 4.13961 * 8 6 3 10 10 C 1.54463 * 107.29544 * 181.02997 * 9 8 6 11 11 C 1.54365 * 102.87898 * 21.48927 * 10 9 8 12 12 C 1.47567 * 125.62933 * 184.17476 * 8 6 3 13 13 C 1.52367 * 110.41315 * 207.65174 * 11 10 9 14 14 N 1.47316 * 108.47022 * 286.29093 * 13 11 10 15 15 C 1.36935 * 121.07468 * 130.84730 * 14 13 11 16 16 H 1.08001 * 119.99703 * 209.43028 * 15 14 13 17 17 C 1.38812 * 120.00436 * 29.43237 * 15 14 13 18 18 N 1.31618 * 119.99521 * 10.85417 * 17 15 14 19 19 Si 1.86796 * 120.00221 * 190.85477 * 17 15 14 20 20 H 1.48502 * 109.47194 * 90.00265 * 19 17 15 21 21 H 1.48501 * 109.47043 * 210.00156 * 19 17 15 22 22 H 1.48499 * 109.47342 * 329.99995 * 19 17 15 23 23 C 1.47172 * 117.84592 * 310.86565 * 14 13 11 24 24 C 1.53286 * 108.51590 * 51.31177 * 23 14 13 25 25 O 1.41870 * 110.76289 * 83.66873 * 11 10 9 26 26 H 1.08991 * 109.47188 * 186.15051 * 1 2 3 27 27 H 1.09004 * 109.46403 * 306.14685 * 1 2 3 28 28 H 1.08999 * 109.46959 * 66.14358 * 1 2 3 29 29 H 1.09000 * 109.46684 * 239.99411 * 2 1 3 30 30 H 1.09002 * 109.46747 * 119.99809 * 2 1 3 31 31 H 1.08996 * 109.47298 * 184.28120 * 3 2 1 32 32 H 1.09002 * 109.47217 * 55.37925 * 4 3 2 33 33 H 1.09000 * 109.47010 * 175.37503 * 4 3 2 34 34 H 1.08997 * 109.47400 * 65.58430 * 5 4 3 35 35 H 1.09004 * 109.46858 * 185.58471 * 5 4 3 36 36 H 1.09003 * 109.46678 * 305.58242 * 5 4 3 37 37 H 1.08998 * 109.87706 * 300.44851 * 9 8 6 38 38 H 1.08993 * 109.88228 * 61.45266 * 9 8 6 39 39 H 1.08997 * 110.73465 * 263.14664 * 10 9 8 40 40 H 1.09000 * 110.73661 * 139.83222 * 10 9 8 41 41 H 1.08995 * 110.37831 * 37.82491 * 12 8 6 42 42 H 1.09005 * 110.37560 * 275.47710 * 12 8 6 43 43 H 1.09001 * 109.63530 * 166.59545 * 13 11 10 44 44 H 1.09005 * 109.63445 * 45.99143 * 13 11 10 45 45 H 0.97006 * 119.99883 * 180.02562 * 18 17 15 46 46 H 1.08993 * 109.63203 * 291.60606 * 23 14 13 47 47 H 1.08998 * 109.78757 * 171.11187 * 23 14 13 48 48 H 1.09002 * 109.51079 * 66.83952 * 24 23 14 49 49 H 1.09000 * 109.50880 * 186.98927 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4442 2.1941 -1.1920 5 6 1.9572 1.5747 -2.4936 6 6 1.6262 2.1217 1.2800 7 8 0.8097 3.0181 1.2542 8 7 2.1633 1.7329 2.4534 9 6 3.2207 0.7241 2.6192 10 6 3.4956 0.5916 4.1334 11 6 2.1975 1.1352 4.7676 12 6 1.7870 2.2485 3.7839 13 6 2.4834 1.7194 6.1455 14 7 2.7197 0.6084 7.0836 15 6 3.8100 0.6026 7.9120 16 1 4.2450 -0.3350 8.2255 17 6 4.3562 1.8016 8.3489 18 7 3.7103 2.9307 8.1484 19 14 6.0078 1.8126 9.2215 20 1 7.0948 1.9683 8.2218 21 1 6.0527 2.9443 10.1819 22 1 6.1889 0.5339 9.9546 23 6 1.7462 -0.4952 7.1013 24 6 1.5430 -0.9882 5.6641 25 8 1.2052 0.1232 4.8281 26 1 -0.3633 -1.0217 0.1101 27 1 -0.3632 0.6062 0.8299 28 1 -0.3633 0.4156 -0.9399 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1274 1.4434 -0.0767 32 1 0.3570 2.1231 -1.1596 33 1 1.7413 3.2418 -1.1463 34 1 1.5771 0.5574 -2.5865 35 1 1.6129 2.1699 -3.3395 36 1 3.0470 1.5558 -2.4822 37 1 2.8863 -0.2327 2.2182 38 1 4.1249 1.0465 2.1029 39 1 4.3516 1.2002 4.4249 40 1 3.6513 -0.4518 4.4076 41 1 0.7120 2.4215 3.8337 42 1 2.3308 3.1676 4.0024 43 1 1.6272 2.3053 6.4798 44 1 3.3688 2.3535 6.0980 45 1 4.0922 3.7687 8.4533 46 1 0.7976 -0.1404 7.5042 47 1 2.1240 -1.3106 7.7181 48 1 2.4629 -1.4486 5.3037 49 1 0.7354 -1.7199 5.6411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972270257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:59 Heat of formation + Delta-G solvation = -61.758149 kcal Electronic energy + Delta-G solvation = -27996.749232 eV Core-core repulsion = 24345.328750 eV Total energy + Delta-G solvation = -3651.420482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.43625 -39.03079 -36.34383 -35.84279 -34.46518 -31.72347 -31.31345 -31.04457 -29.52961 -28.05101 -27.13938 -25.41378 -23.73438 -23.50028 -22.75927 -21.47408 -20.49030 -19.03729 -18.47501 -17.08122 -16.85161 -16.17472 -15.79244 -15.68078 -15.08523 -14.79550 -14.41930 -14.26556 -13.99529 -13.67409 -13.38405 -13.26086 -13.06077 -12.81523 -12.74217 -12.64697 -12.29440 -12.15826 -12.06719 -11.75386 -11.48480 -11.37318 -11.16684 -11.04459 -10.95873 -10.89749 -10.73509 -10.67520 -10.48353 -10.31069 -10.27584 -10.02192 -9.57439 -9.50888 -9.03351 -8.59568 -8.37447 -6.73887 -5.87933 -3.36059 2.82802 3.17745 3.30586 3.37690 3.39132 4.17931 4.38464 4.52429 4.61950 4.77676 4.90261 4.99579 5.10166 5.14988 5.23042 5.26876 5.30929 5.36325 5.44456 5.52688 5.57921 5.63684 5.66669 5.73260 5.78751 5.81193 5.86000 5.94681 5.99441 6.03111 6.07335 6.11743 6.16162 6.16909 6.29045 6.31456 6.34922 6.46811 6.51266 6.64753 6.77654 7.04703 7.43293 7.67282 7.75703 7.92455 8.30782 8.36862 9.07618 9.68857 10.28174 11.20051 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.003701 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.812044 B = 7564.724999 C = 8009.586190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.108 4.108 5 C -0.152 4.152 6 C 0.533 3.467 7 O -0.546 6.546 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.144 4.144 11 C 0.085 3.915 12 C 0.124 3.876 13 C 0.165 3.835 14 N -0.592 5.592 15 C -0.254 4.254 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.904 5.904 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.374 6.374 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.097 0.903 45 H 0.256 0.744 46 H 0.026 0.974 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -6.596 -16.365 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.125 4.125 4 C -0.145 4.145 5 C -0.209 4.209 6 C 0.322 3.678 7 O -0.424 6.424 8 N -0.344 5.344 9 C -0.022 4.022 10 C -0.182 4.182 11 C 0.043 3.957 12 C 0.001 3.999 13 C 0.038 3.962 14 N -0.316 5.316 15 C -0.383 4.383 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.548 5.548 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.293 6.293 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.090 -5.914 -16.469 17.623 hybrid contribution 1.192 -0.028 0.795 1.433 sum -0.897 -5.942 -15.673 16.786 Atomic orbital electron populations 1.21835 0.95304 1.01681 1.02340 1.21579 0.96914 0.94215 1.02804 1.21378 1.01685 0.96507 0.92917 1.21395 1.01598 0.99296 0.92247 1.21820 1.01015 1.00939 0.97114 1.20242 0.80810 0.82804 0.83973 1.90676 1.34332 1.30842 1.86579 1.48563 1.38757 1.40876 1.06202 1.22204 0.89926 0.91695 0.98350 1.23025 0.99553 1.03515 0.92105 1.22711 0.87061 0.88329 0.97551 1.22094 1.01821 0.95900 0.80054 1.21135 1.01495 0.90079 0.83456 1.44019 1.24806 1.20710 1.42102 1.19153 1.03916 0.92352 1.22889 0.91500 1.25154 0.99292 0.96141 0.98777 1.69962 1.37381 0.97682 1.49795 0.86240 0.83657 0.77294 0.79250 1.21350 1.21611 1.20408 1.21594 0.93635 0.92539 0.93960 1.23089 0.99530 0.88151 0.92384 1.87643 1.42711 1.30989 1.67931 0.92703 0.92337 0.92342 0.90924 0.90991 0.89149 0.90713 0.91528 0.92523 0.92639 0.92805 0.91429 0.91859 0.89471 0.89638 0.89988 0.89830 0.95215 0.88498 0.93392 0.95584 0.91950 0.93552 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.14 37.16 0.34 -1.35 16 2 C -0.12 -1.19 5.27 -26.73 -0.14 -1.33 16 3 C -0.10 -1.19 1.91 -91.77 -0.17 -1.36 16 4 C -0.11 -1.16 4.39 -26.73 -0.12 -1.28 16 5 C -0.15 -1.22 9.52 37.16 0.35 -0.87 16 6 C 0.53 8.33 5.96 -10.98 -0.07 8.26 16 7 O -0.55 -10.41 16.31 5.56 0.09 -10.32 16 8 N -0.61 -9.60 3.33 -170.76 -0.57 -10.17 16 9 C 0.10 1.37 6.20 -2.95 -0.02 1.35 16 10 C -0.14 -2.34 5.88 -25.25 -0.15 -2.49 16 11 C 0.09 1.60 0.84 -89.64 -0.08 1.52 16 12 C 0.12 2.21 6.07 -2.87 -0.02 2.20 16 13 C 0.16 3.76 4.01 -3.92 -0.02 3.75 16 14 N -0.59 -14.15 2.98 -172.25 -0.51 -14.67 16 15 C -0.25 -6.59 9.66 -15.06 -0.15 -6.73 16 16 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 17 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 18 N -0.90 -25.20 11.04 55.49 0.61 -24.59 16 19 Si 0.91 20.84 29.57 -169.99 -5.03 15.81 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C 0.11 2.21 6.71 -3.53 -0.02 2.18 16 24 C 0.05 0.80 6.79 37.31 0.25 1.05 16 25 O -0.37 -7.09 10.28 -35.22 -0.36 -7.46 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.81 7.17 -51.93 -0.37 0.44 16 28 H 0.06 0.58 6.62 -51.93 -0.34 0.24 16 29 H 0.07 0.59 6.90 -51.93 -0.36 0.23 16 30 H 0.07 0.77 5.38 -51.93 -0.28 0.49 16 31 H 0.09 0.91 8.02 -51.93 -0.42 0.49 16 32 H 0.07 0.88 6.22 -51.93 -0.32 0.55 16 33 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.06 0.42 6.94 -51.93 -0.36 0.06 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.83 5.71 -51.93 -0.30 0.53 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.50 7.82 -51.93 -0.41 1.09 16 40 H 0.09 1.38 6.10 -51.93 -0.32 1.06 16 41 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 42 H 0.08 1.50 7.99 -51.93 -0.42 1.08 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 2.42 6.03 -51.93 -0.31 2.11 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 1.19 7.97 -51.93 -0.41 0.78 16 48 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 49 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -30.12 366.67 -8.61 -38.73 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.29 Total: 2.18 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.08 Total: 4.95 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.47 Total: -49.42 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.27 Total: -17.77 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.12 -8.61 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972270257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.027 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds