Wall clock time and date at job start Tue Mar 31 2020 10:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47361 * 2 1 4 4 C 1.53003 * 109.46941 * 304.27679 * 3 2 1 5 5 C 1.53002 * 109.47159 * 295.37741 * 4 3 2 6 6 C 1.50703 * 109.47500 * 64.27489 * 3 2 1 7 7 O 1.21276 * 120.00170 * 248.01143 * 6 3 2 8 8 N 1.34777 * 119.99692 * 68.00284 * 6 3 2 9 9 C 1.47087 * 125.62919 * 4.13961 * 8 6 3 10 10 C 1.54463 * 107.29544 * 181.02997 * 9 8 6 11 11 C 1.54365 * 102.87898 * 21.48927 * 10 9 8 12 12 C 1.47567 * 125.62933 * 184.17476 * 8 6 3 13 13 C 1.52367 * 110.41315 * 207.65174 * 11 10 9 14 14 N 1.47316 * 108.47022 * 286.29093 * 13 11 10 15 15 C 1.36935 * 121.07468 * 130.84730 * 14 13 11 16 16 H 1.08001 * 119.99703 * 209.43028 * 15 14 13 17 17 C 1.38812 * 120.00436 * 29.43237 * 15 14 13 18 18 N 1.31618 * 119.99521 * 10.85417 * 17 15 14 19 19 Si 1.86796 * 120.00221 * 190.85477 * 17 15 14 20 20 H 1.48502 * 109.47194 * 90.00265 * 19 17 15 21 21 H 1.48501 * 109.47043 * 210.00156 * 19 17 15 22 22 H 1.48499 * 109.47342 * 329.99995 * 19 17 15 23 23 C 1.47172 * 117.84592 * 310.86565 * 14 13 11 24 24 C 1.53286 * 108.51590 * 51.31177 * 23 14 13 25 25 O 1.41870 * 110.76289 * 83.66873 * 11 10 9 26 26 H 1.08991 * 109.47188 * 186.15051 * 1 2 3 27 27 H 1.09004 * 109.46403 * 306.14685 * 1 2 3 28 28 H 1.08999 * 109.46959 * 66.14358 * 1 2 3 29 29 H 1.09000 * 109.46684 * 239.99411 * 2 1 3 30 30 H 1.09002 * 109.46747 * 119.99809 * 2 1 3 31 31 H 1.08996 * 109.47298 * 184.28120 * 3 2 1 32 32 H 1.09002 * 109.47217 * 55.37925 * 4 3 2 33 33 H 1.09000 * 109.47010 * 175.37503 * 4 3 2 34 34 H 1.08997 * 109.47400 * 65.58430 * 5 4 3 35 35 H 1.09004 * 109.46858 * 185.58471 * 5 4 3 36 36 H 1.09003 * 109.46678 * 305.58242 * 5 4 3 37 37 H 1.08998 * 109.87706 * 300.44851 * 9 8 6 38 38 H 1.08993 * 109.88228 * 61.45266 * 9 8 6 39 39 H 1.08997 * 110.73465 * 263.14664 * 10 9 8 40 40 H 1.09000 * 110.73661 * 139.83222 * 10 9 8 41 41 H 1.08995 * 110.37831 * 37.82491 * 12 8 6 42 42 H 1.09005 * 110.37560 * 275.47710 * 12 8 6 43 43 H 1.09001 * 109.63530 * 166.59545 * 13 11 10 44 44 H 1.09005 * 109.63445 * 45.99143 * 13 11 10 45 45 H 0.97006 * 119.99883 * 180.02562 * 18 17 15 46 46 H 1.08993 * 109.63203 * 291.60606 * 23 14 13 47 47 H 1.08998 * 109.78757 * 171.11187 * 23 14 13 48 48 H 1.09002 * 109.51079 * 66.83952 * 24 23 14 49 49 H 1.09000 * 109.50880 * 186.98927 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4442 2.1941 -1.1920 5 6 1.9572 1.5747 -2.4936 6 6 1.6262 2.1217 1.2800 7 8 0.8097 3.0181 1.2542 8 7 2.1633 1.7329 2.4534 9 6 3.2207 0.7241 2.6192 10 6 3.4956 0.5916 4.1334 11 6 2.1975 1.1352 4.7676 12 6 1.7870 2.2485 3.7839 13 6 2.4834 1.7194 6.1455 14 7 2.7197 0.6084 7.0836 15 6 3.8100 0.6026 7.9120 16 1 4.2450 -0.3350 8.2255 17 6 4.3562 1.8016 8.3489 18 7 3.7103 2.9307 8.1484 19 14 6.0078 1.8126 9.2215 20 1 7.0948 1.9683 8.2218 21 1 6.0527 2.9443 10.1819 22 1 6.1889 0.5339 9.9546 23 6 1.7462 -0.4952 7.1013 24 6 1.5430 -0.9882 5.6641 25 8 1.2052 0.1232 4.8281 26 1 -0.3633 -1.0217 0.1101 27 1 -0.3632 0.6062 0.8299 28 1 -0.3633 0.4156 -0.9399 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1274 1.4434 -0.0767 32 1 0.3570 2.1231 -1.1596 33 1 1.7413 3.2418 -1.1463 34 1 1.5771 0.5574 -2.5865 35 1 1.6129 2.1699 -3.3395 36 1 3.0470 1.5558 -2.4822 37 1 2.8863 -0.2327 2.2182 38 1 4.1249 1.0465 2.1029 39 1 4.3516 1.2002 4.4249 40 1 3.6513 -0.4518 4.4076 41 1 0.7120 2.4215 3.8337 42 1 2.3308 3.1676 4.0024 43 1 1.6272 2.3053 6.4798 44 1 3.3688 2.3535 6.0980 45 1 4.0922 3.7687 8.4533 46 1 0.7976 -0.1404 7.5042 47 1 2.1240 -1.3106 7.7181 48 1 2.4629 -1.4486 5.3037 49 1 0.7354 -1.7199 5.6411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972270257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:58 Heat of formation + Delta-G solvation = -80.223635 kcal Electronic energy + Delta-G solvation = -27997.549955 eV Core-core repulsion = 24345.328750 eV Total energy + Delta-G solvation = -3652.221205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74964 -40.41177 -37.63810 -36.96563 -36.25019 -33.26208 -32.97939 -31.96591 -30.88229 -29.36197 -28.57587 -26.95636 -25.24304 -24.49974 -24.03947 -23.05913 -21.58351 -20.50976 -19.66961 -18.91127 -18.05712 -17.62470 -16.98780 -16.91744 -16.47785 -16.13784 -16.06923 -15.73539 -15.28188 -15.12003 -14.85421 -14.54109 -14.33379 -14.11579 -13.89857 -13.73201 -13.62655 -13.55071 -13.07780 -12.90750 -12.78873 -12.66998 -12.59588 -12.49328 -12.35989 -12.17464 -12.12937 -11.99210 -11.87835 -11.83052 -11.48981 -11.33691 -11.16046 -10.81835 -10.65265 -10.48798 -9.65917 -8.68586 -7.88706 -5.40600 1.48018 1.48835 1.57823 1.62572 1.95125 2.47996 2.72976 3.25832 3.36602 3.55187 3.60839 3.78229 3.90202 3.95022 4.02064 4.18544 4.28630 4.29090 4.37683 4.38081 4.47266 4.52092 4.56082 4.62489 4.65163 4.68276 4.75360 4.77861 4.88749 4.90200 4.94698 5.04425 5.05310 5.07298 5.12600 5.21819 5.25982 5.27093 5.28753 5.30510 5.37038 5.52022 5.58863 5.61843 6.31647 6.41767 6.54791 7.07587 7.14175 7.74700 8.31350 9.17140 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.003701 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.812044 B = 7564.724999 C = 8009.586190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.096 4.096 4 C -0.107 4.107 5 C -0.145 4.145 6 C 0.526 3.474 7 O -0.591 6.591 8 N -0.611 5.611 9 C 0.106 3.894 10 C -0.137 4.137 11 C 0.095 3.905 12 C 0.127 3.873 13 C 0.177 3.823 14 N -0.608 5.608 15 C -0.258 4.258 16 H 0.075 0.925 17 C -0.048 4.048 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.267 1.267 23 C 0.103 3.897 24 C 0.053 3.947 25 O -0.383 6.383 26 H 0.067 0.933 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.073 0.927 43 H -0.012 1.012 44 H 0.070 0.930 45 H 0.250 0.750 46 H 0.010 0.990 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -9.571 -18.637 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.117 4.117 4 C -0.145 4.145 5 C -0.202 4.202 6 C 0.317 3.683 7 O -0.471 6.471 8 N -0.344 5.344 9 C -0.015 4.015 10 C -0.175 4.175 11 C 0.053 3.947 12 C 0.003 3.997 13 C 0.050 3.950 14 N -0.333 5.333 15 C -0.388 4.388 16 H 0.092 0.908 17 C -0.244 4.244 18 N -0.585 5.585 19 Si 0.798 3.202 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.192 1.192 23 C -0.023 4.023 24 C -0.024 4.024 25 O -0.302 6.302 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.006 0.994 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.483 -8.943 -18.756 20.784 hybrid contribution 0.591 0.901 1.575 1.908 sum 0.109 -8.042 -17.181 18.970 Atomic orbital electron populations 1.21826 0.96355 1.01713 1.01188 1.21611 0.95902 0.93107 1.04341 1.21472 1.03122 0.96947 0.90164 1.21379 1.00755 0.98624 0.93698 1.21779 1.01723 1.01396 0.95281 1.21177 0.79875 0.82245 0.84994 1.90653 1.36312 1.32947 1.87225 1.48646 1.39286 1.41239 1.05233 1.22339 0.90424 0.92315 0.96428 1.22921 0.97205 1.03397 0.93947 1.22364 0.88703 0.88605 0.95064 1.21837 1.00352 0.95642 0.81866 1.20831 0.98476 0.89712 0.85941 1.44276 1.25285 1.21487 1.42238 1.19507 1.04331 0.92558 1.22381 0.90750 1.25913 1.02553 0.95870 1.00016 1.70150 1.38949 0.98037 1.51344 0.85224 0.79818 0.77140 0.77992 1.20763 1.22678 1.19152 1.21795 0.92045 0.91731 0.96694 1.23171 1.01757 0.87866 0.89601 1.87646 1.43113 1.31352 1.68072 0.91414 0.96054 0.91606 0.87624 0.90997 0.86658 0.92266 0.93308 0.91215 0.92152 0.91584 0.88906 0.88907 0.90770 0.88783 0.92140 0.90855 0.99391 0.91133 0.94086 0.97184 0.90627 0.91893 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.14 71.98 0.66 -2.41 16 2 C -0.11 -1.85 5.27 30.60 0.16 -1.69 16 3 C -0.10 -1.95 1.91 -11.54 -0.02 -1.97 16 4 C -0.11 -2.12 4.39 30.60 0.13 -1.99 16 5 C -0.14 -1.84 9.52 71.98 0.69 -1.15 16 6 C 0.53 16.17 5.96 87.66 0.52 16.69 16 7 O -0.59 -23.27 16.31 -3.02 -0.05 -23.32 16 8 N -0.61 -18.77 3.33 -812.55 -2.71 -21.48 16 9 C 0.11 2.56 6.20 86.76 0.54 3.10 16 10 C -0.14 -4.23 5.88 31.55 0.19 -4.05 16 11 C 0.09 3.58 0.84 -10.16 -0.01 3.57 16 12 C 0.13 4.73 6.07 86.56 0.53 5.25 16 13 C 0.18 8.48 4.01 86.01 0.34 8.83 16 14 N -0.61 -29.52 2.98 -698.87 -2.08 -31.60 16 15 C -0.26 -13.45 9.66 84.03 0.81 -12.64 16 16 H 0.07 3.71 7.85 -2.91 -0.02 3.68 16 17 C -0.05 -2.59 5.07 84.86 0.43 -2.16 16 18 N -0.94 -54.49 11.04 21.65 0.24 -54.25 16 19 Si 0.97 43.18 29.57 68.60 2.03 45.20 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 C 0.10 4.11 6.71 86.35 0.58 4.69 16 24 C 0.05 1.70 6.79 72.08 0.49 2.19 16 25 O -0.38 -14.22 10.28 -148.95 -1.53 -15.75 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.02 0.57 7.17 -2.38 -0.02 0.55 16 28 H 0.06 1.19 6.62 -2.39 -0.02 1.18 16 29 H 0.11 1.13 6.90 -2.39 -0.02 1.12 16 30 H 0.07 1.22 5.38 -2.39 -0.01 1.20 16 31 H 0.12 1.82 8.02 -2.39 -0.02 1.80 16 32 H 0.06 1.35 6.22 -2.39 -0.01 1.34 16 33 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.07 0.72 6.94 -2.39 -0.02 0.70 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 1.84 5.71 -2.39 -0.01 1.83 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.50 7.82 -2.39 -0.02 2.48 16 40 H 0.09 2.76 6.10 -2.39 -0.01 2.74 16 41 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 42 H 0.07 2.83 7.99 -2.38 -0.02 2.81 16 43 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H 0.07 3.74 6.03 -2.38 -0.01 3.72 16 45 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 47 H 0.08 2.78 7.97 -2.39 -0.02 2.76 16 48 H 0.06 1.85 6.25 -2.39 -0.01 1.83 16 49 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -69.14 366.67 2.86 -66.28 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.93 Total: 18.64 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.03 Total: 16.26 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.55 Total: -107.32 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.58 Total: -39.07 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.14 2.86 -66.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972270257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.945 kcal (2) G-P(sol) polarization free energy of solvation -69.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds