Wall clock time and date at job start Tue Mar 31 2020 10:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47505 * 2 1 4 4 C 1.53009 * 109.47288 * 59.99746 * 3 2 1 5 5 C 1.53002 * 109.47462 * 300.00244 * 3 2 1 6 6 C 1.50702 * 109.47387 * 179.97438 * 3 2 1 7 7 O 1.21280 * 119.99646 * 3.50513 * 6 3 2 8 8 N 1.34773 * 120.00162 * 183.50567 * 6 3 2 9 9 C 1.47479 * 125.66334 * 185.26389 * 8 6 3 10 10 C 1.55028 * 104.89965 * 204.02524 * 9 8 6 11 11 C 1.54514 * 101.52561 * 323.62430 * 10 9 8 12 12 C 1.47189 * 125.66410 * 5.29105 * 8 6 3 13 13 C 1.52516 * 110.05392 * 153.10827 * 11 10 9 14 14 N 1.47305 * 108.39951 * 72.10339 * 13 11 10 15 15 C 1.36940 * 121.06541 * 229.34504 * 14 13 11 16 16 H 1.07995 * 120.00376 * 151.87415 * 15 14 13 17 17 C 1.38813 * 119.99817 * 331.88340 * 15 14 13 18 18 N 1.31625 * 119.99892 * 347.75855 * 17 15 14 19 19 Si 1.86794 * 119.99959 * 167.76135 * 17 15 14 20 20 H 1.48503 * 109.47173 * 59.99909 * 19 17 15 21 21 H 1.48506 * 109.47056 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47229 * 299.99819 * 19 17 15 23 23 C 1.47166 * 117.87662 * 49.37290 * 14 13 11 24 24 C 1.53280 * 108.70369 * 308.78486 * 23 14 13 25 25 O 1.42062 * 110.33025 * 276.08543 * 11 10 9 26 26 H 1.09001 * 109.47052 * 300.00518 * 1 2 3 27 27 H 1.09008 * 109.46756 * 59.99497 * 1 2 3 28 28 H 1.08996 * 109.47473 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47052 * 239.99481 * 2 1 3 30 30 H 1.09001 * 109.46434 * 120.00324 * 2 1 3 31 31 H 1.08991 * 109.47417 * 196.25300 * 4 3 2 32 32 H 1.09004 * 109.46956 * 316.25867 * 4 3 2 33 33 H 1.09007 * 109.46675 * 76.24877 * 4 3 2 34 34 H 1.09001 * 109.46818 * 306.50393 * 5 3 2 35 35 H 1.09000 * 109.47348 * 66.50421 * 5 3 2 36 36 H 1.09001 * 109.47523 * 186.51118 * 5 3 2 37 37 H 1.08998 * 110.35829 * 322.88545 * 9 8 6 38 38 H 1.09007 * 110.35165 * 85.06398 * 9 8 6 39 39 H 1.09001 * 111.01185 * 205.55901 * 10 9 8 40 40 H 1.08999 * 111.01103 * 81.68603 * 10 9 8 41 41 H 1.08998 * 109.91129 * 59.12202 * 12 8 6 42 42 H 1.09008 * 109.90851 * 297.85948 * 12 8 6 43 43 H 1.08999 * 109.67873 * 312.38027 * 13 11 10 44 44 H 1.08999 * 109.67754 * 191.82976 * 13 11 10 45 45 H 0.96996 * 119.99976 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.62311 * 68.59433 * 23 14 13 47 47 H 1.08996 * 109.62454 * 188.97347 * 23 14 13 48 48 H 1.09009 * 109.50747 * 172.91877 * 24 23 14 49 49 H 1.08996 * 109.51169 * 293.06763 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5301 2.1637 -1.2492 6 6 3.5471 1.4423 0.0006 7 8 4.1535 0.3939 -0.0632 8 7 4.2210 2.6073 0.0721 9 6 5.6843 2.7617 -0.0280 10 6 5.9959 4.0915 0.7055 11 6 4.7714 4.9513 0.3194 12 6 3.6188 3.9367 0.2636 13 6 4.5097 6.0011 1.3943 14 7 5.5642 7.0262 1.3096 15 6 6.2470 7.4315 2.4253 16 1 7.2584 7.7994 2.3356 17 6 5.6391 7.3693 3.6717 18 7 4.3436 7.1548 3.7621 19 14 6.6596 7.5901 5.2206 20 1 7.3042 8.9278 5.2022 21 1 5.7803 7.4813 6.4124 22 1 7.7053 6.5375 5.2787 23 6 5.8602 7.6013 -0.0123 24 6 6.0908 6.4570 -1.0057 25 8 4.9742 5.5573 -0.9494 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.6393 3.2401 1.1173 32 1 0.4788 1.9215 1.4049 33 1 2.1089 1.8432 2.1156 34 1 1.7952 1.5871 -2.1354 35 1 0.4464 2.2658 -1.1929 36 1 1.9855 3.1522 -1.3094 37 1 6.1879 1.9300 0.4646 38 1 5.9884 2.8229 -1.0729 39 1 6.9188 4.5361 0.3334 40 1 6.0435 3.9411 1.7840 41 1 3.0588 3.9593 1.1984 42 1 2.9596 4.1695 -0.5728 43 1 4.5317 5.5325 2.3782 44 1 3.5359 6.4617 1.2281 45 1 3.9189 7.1110 4.6330 46 1 5.0186 8.2097 -0.3436 47 1 6.7563 8.2187 0.0494 48 1 6.1866 6.8630 -2.0128 49 1 7.0025 5.9222 -0.7398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972524378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:04 Heat of formation + Delta-G solvation = -49.556976 kcal Electronic energy + Delta-G solvation = -28320.627339 eV Core-core repulsion = 24669.735939 eV Total energy + Delta-G solvation = -3650.891399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.61539 -39.07818 -36.42479 -35.99794 -34.48601 -31.61075 -31.31136 -30.53022 -29.04341 -27.56410 -27.35167 -25.87506 -24.82258 -23.63862 -22.80648 -21.41514 -20.39877 -18.90019 -18.53758 -17.21935 -16.57262 -16.13245 -15.67117 -15.25349 -14.91762 -14.74831 -14.42078 -14.30702 -14.12400 -13.83194 -13.45057 -13.27791 -12.98907 -12.75364 -12.69973 -12.57845 -12.41901 -12.19229 -12.03403 -11.53708 -11.41973 -11.28365 -11.26292 -11.04765 -10.91416 -10.89413 -10.71120 -10.65003 -10.54566 -10.33784 -10.27245 -10.00860 -9.58382 -9.48945 -9.05548 -8.59802 -8.39027 -6.77581 -5.90151 -3.36218 2.81129 3.16074 3.31263 3.37439 3.37859 4.14460 4.37157 4.46042 4.64919 4.81618 4.92310 5.00445 5.18672 5.23764 5.28857 5.37448 5.38541 5.43518 5.45307 5.51935 5.63175 5.69726 5.71784 5.76669 5.79099 5.84604 5.86490 5.92299 5.98171 6.00950 6.03863 6.10985 6.16362 6.29248 6.30422 6.35705 6.36742 6.47494 6.56444 6.59960 6.74304 7.00994 7.38218 7.65408 7.73545 7.85891 8.28355 8.34181 9.05783 9.67420 10.25413 11.18087 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.004310 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.733482 B = 6495.120597 C = 7134.312842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.077 4.077 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.538 3.462 7 O -0.551 6.551 8 N -0.610 5.610 9 C 0.108 3.892 10 C -0.144 4.144 11 C 0.084 3.916 12 C 0.107 3.893 13 C 0.165 3.835 14 N -0.592 5.592 15 C -0.254 4.254 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.906 5.906 19 Si 0.905 3.095 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.379 6.379 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.029 0.971 45 H 0.256 0.744 46 H 0.027 0.973 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -8.311 -8.314 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.080 4.080 4 C -0.215 4.215 5 C -0.206 4.206 6 C 0.327 3.673 7 O -0.429 6.429 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.182 4.182 11 C 0.042 3.958 12 C -0.015 4.015 13 C 0.038 3.962 14 N -0.316 5.316 15 C -0.383 4.383 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.550 5.550 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.209 1.209 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.298 6.298 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.178 -8.963 -8.334 13.289 hybrid contribution 0.738 0.365 1.031 1.319 sum -4.441 -8.598 -7.303 12.123 Atomic orbital electron populations 1.21938 0.95588 1.01598 1.02150 1.21331 0.95297 0.93807 1.03136 1.20733 0.91126 0.98145 0.98001 1.22232 1.01984 1.01333 0.95958 1.22045 1.01816 1.00914 0.95798 1.20261 0.89511 0.82022 0.75502 1.90654 1.70460 1.30756 1.51024 1.48525 1.07938 1.06435 1.71398 1.22272 0.80462 0.98409 1.00295 1.23189 0.99690 0.93854 1.01456 1.22688 0.93248 0.93312 0.86548 1.22364 0.95936 0.80741 1.02504 1.21216 0.91059 0.87746 0.96161 1.44013 1.42711 1.42317 1.02539 1.19123 0.94889 1.39479 0.84806 0.91500 1.25083 0.95231 1.00601 0.98374 1.69947 1.08039 1.53435 1.23576 0.86333 0.79331 0.78276 0.82609 1.20815 1.21502 1.20919 1.21585 0.99161 0.93802 0.87139 1.23175 0.88785 0.91641 0.99588 1.87708 1.50243 1.60674 1.31186 0.92167 0.92399 0.92740 0.91408 0.91478 0.90687 0.90959 0.92133 0.92331 0.91162 0.91191 0.90928 0.91786 0.89493 0.89654 0.88897 0.90091 0.88388 0.95329 0.93376 0.95553 0.91945 0.89863 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.26 37.16 0.34 -1.04 16 2 C -0.10 -1.13 4.28 -26.74 -0.11 -1.25 16 3 C -0.08 -0.96 0.52 -155.66 -0.08 -1.04 16 4 C -0.16 -1.83 7.66 37.16 0.28 -1.54 16 5 C -0.15 -1.62 7.76 37.16 0.29 -1.34 16 6 C 0.54 8.65 6.51 -10.99 -0.07 8.58 16 7 O -0.55 -10.51 16.22 5.56 0.09 -10.42 16 8 N -0.61 -9.74 3.32 -170.68 -0.57 -10.31 16 9 C 0.11 1.74 6.93 -2.43 -0.02 1.72 16 10 C -0.14 -2.49 5.91 -24.86 -0.15 -2.64 16 11 C 0.08 1.52 0.83 -89.73 -0.07 1.44 16 12 C 0.11 1.68 4.49 -3.32 -0.01 1.67 16 13 C 0.16 3.63 3.91 -3.85 -0.02 3.62 16 14 N -0.59 -13.90 2.94 -172.18 -0.51 -14.41 16 15 C -0.25 -6.55 9.66 -15.06 -0.15 -6.69 16 16 H 0.07 1.69 7.86 -52.49 -0.41 1.28 16 17 C 0.01 0.15 5.05 -17.43 -0.09 0.07 16 18 N -0.91 -24.74 11.02 55.49 0.61 -24.13 16 19 Si 0.90 20.80 29.57 -169.99 -5.03 15.78 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.11 2.16 6.70 -3.53 -0.02 2.14 16 24 C 0.05 0.77 6.80 37.30 0.25 1.02 16 25 O -0.38 -6.89 10.23 -35.23 -0.36 -7.25 16 26 H 0.06 0.50 6.11 -51.93 -0.32 0.19 16 27 H 0.06 0.47 6.58 -51.92 -0.34 0.13 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 30 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.07 0.88 5.07 -51.93 -0.26 0.62 16 32 H 0.07 0.70 5.74 -51.93 -0.30 0.40 16 33 H 0.06 0.76 8.03 -51.93 -0.42 0.34 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.63 6.79 -51.93 -0.35 0.28 16 36 H 0.07 0.82 4.96 -51.93 -0.26 0.56 16 37 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.50 5.99 -51.93 -0.31 1.19 16 40 H 0.08 1.59 7.86 -51.93 -0.41 1.19 16 41 H 0.09 1.43 5.32 -51.93 -0.28 1.16 16 42 H 0.08 1.19 5.46 -51.92 -0.28 0.91 16 43 H 0.10 2.40 6.00 -51.93 -0.31 2.09 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 48 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 49 H 0.05 0.80 6.15 -51.93 -0.32 0.48 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -29.56 358.13 -7.89 -37.45 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.91 Total: 3.17 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 0.38 Total: 4.73 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.46 Total: -48.85 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.27 Total: -17.67 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.56 -7.89 -37.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972524378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.107 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds