Wall clock time and date at job start Tue Mar 31 2020 09:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34785 * 120.00232 * 2 1 4 4 O 1.21279 * 119.99431 * 355.74474 * 3 2 1 5 5 C 1.50700 * 119.99850 * 176.01137 * 3 2 1 6 6 C 1.52997 * 109.47465 * 304.13655 * 5 3 2 7 7 C 1.53004 * 109.46698 * 64.13665 * 5 3 2 8 8 C 1.53004 * 109.46626 * 184.13348 * 5 3 2 9 9 C 1.53178 * 109.54535 * 299.82376 * 8 5 3 10 10 C 1.53108 * 109.15535 * 183.24296 * 9 8 5 11 11 O 1.42897 * 109.48727 * 57.47716 * 10 9 8 12 12 C 1.42907 * 114.09819 * 298.88903 * 11 10 9 13 13 C 1.53089 * 109.41470 * 61.15703 * 12 11 10 14 14 C 1.46497 * 119.99903 * 180.02562 * 2 1 3 15 15 C 1.53945 * 113.74605 * 42.56403 * 14 2 1 16 16 N 1.47809 * 86.03617 * 222.08710 * 15 14 2 17 17 C 1.36944 * 134.45405 * 204.64528 * 16 15 14 18 18 H 1.07995 * 119.99995 * 184.01535 * 17 16 15 19 19 C 1.38817 * 119.99939 * 4.00898 * 17 16 15 20 20 N 1.31625 * 119.99852 * 6.19477 * 19 17 16 21 21 Si 1.86797 * 120.00094 * 186.19222 * 19 17 16 22 22 H 1.48500 * 109.46915 * 94.97200 * 21 19 17 23 23 H 1.48498 * 109.47341 * 214.97888 * 21 19 17 24 24 H 1.48501 * 109.46806 * 334.97797 * 21 19 17 25 25 C 1.47575 * 91.05269 * 24.54630 * 16 15 14 26 26 H 1.09003 * 109.47565 * 93.34490 * 1 2 3 27 27 H 1.08998 * 109.47431 * 213.34854 * 1 2 3 28 28 H 1.09000 * 109.46937 * 333.35077 * 1 2 3 29 29 H 1.08997 * 109.47030 * 60.02346 * 6 5 3 30 30 H 1.09003 * 109.47004 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47248 * 300.02675 * 6 5 3 32 32 H 1.09003 * 109.47194 * 77.68686 * 7 5 3 33 33 H 1.09006 * 109.46847 * 197.67694 * 7 5 3 34 34 H 1.08992 * 109.47612 * 317.68090 * 7 5 3 35 35 H 1.08996 * 109.54283 * 60.00307 * 8 5 3 36 36 H 1.08999 * 109.51996 * 303.05986 * 9 8 5 37 37 H 1.09001 * 109.51786 * 63.25084 * 9 8 5 38 38 H 1.09003 * 109.40191 * 297.49303 * 10 9 8 39 39 H 1.09000 * 109.48725 * 177.51492 * 10 9 8 40 40 H 1.08997 * 109.47664 * 301.17729 * 12 11 10 41 41 H 1.09005 * 109.49026 * 181.14606 * 12 11 10 42 42 H 1.09007 * 109.52403 * 182.48720 * 13 12 11 43 43 H 1.09001 * 109.52108 * 62.30011 * 13 12 11 44 44 H 1.09000 * 112.94382 * 174.15862 * 14 2 1 45 45 H 1.08998 * 113.76436 * 336.35058 * 15 14 2 46 46 H 1.08997 * 113.76599 * 107.74407 * 15 14 2 47 47 H 0.96993 * 119.99553 * 179.97438 * 20 19 17 48 48 H 1.09006 * 113.76912 * 221.14785 * 25 16 15 49 49 H 1.08998 * 113.76569 * 89.75623 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5349 2.2161 -0.0779 5 6 3.6432 1.1687 0.0908 6 6 4.0795 0.4018 1.3407 7 6 4.2296 0.4952 -1.1516 8 6 4.1475 2.6108 0.1752 9 6 3.7153 3.3790 -1.0776 10 6 4.2926 4.7960 -1.0221 11 8 5.7154 4.7270 -0.9100 12 6 6.1764 4.0615 0.2677 13 6 5.6767 2.6144 0.2630 14 6 2.1974 -1.2687 -0.0006 15 6 1.6085 -2.3241 -0.9542 16 7 1.8505 -3.2939 0.1346 17 6 2.0494 -4.6479 0.1864 18 1 2.1443 -5.1436 1.1411 19 6 2.1288 -5.3831 -0.9884 20 7 2.1355 -4.7667 -2.1514 21 14 2.2262 -7.2472 -0.9188 22 1 0.8643 -7.8200 -1.0690 23 1 3.0942 -7.7390 -2.0187 24 1 2.7974 -7.6646 0.3869 25 6 1.7943 -2.2176 1.1427 26 1 -0.3634 -0.0600 -1.0259 27 1 -0.3634 -0.8584 0.5649 28 1 -0.3633 0.9185 0.4609 29 1 3.7205 -0.6256 1.2803 30 1 5.1675 0.4033 1.4065 31 1 3.6613 0.8813 2.2257 32 1 4.1940 1.1886 -1.9918 33 1 5.2644 0.2127 -0.9574 34 1 3.6486 -0.3955 -1.3905 35 1 3.7303 3.0918 1.0599 36 1 4.0900 2.8688 -1.9650 37 1 2.6271 3.4287 -1.1170 38 1 3.8847 5.3196 -0.1575 39 1 4.0251 5.3334 -1.9319 40 1 5.7932 4.5755 1.1491 41 1 7.2662 4.0697 0.2871 42 1 5.9900 2.1179 1.1814 43 1 6.0922 2.0884 -0.5966 44 1 3.2746 -1.1374 -0.1027 45 1 0.5532 -2.1717 -1.1802 46 1 2.2143 -2.4995 -1.8432 47 1 2.1914 -5.2804 -2.9722 48 1 2.5482 -2.3084 1.9248 49 1 0.7937 -2.0339 1.5339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043277187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:31 Heat of formation + Delta-G solvation = -10.047183 kcal Electronic energy + Delta-G solvation = -28079.393174 eV Core-core repulsion = 24430.215048 eV Total energy + Delta-G solvation = -3649.178126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00837 -39.15704 -37.82870 -36.03006 -34.28817 -31.95344 -31.66361 -31.13238 -27.75116 -27.44196 -26.81352 -25.36441 -24.91493 -23.67359 -23.46635 -21.90787 -20.11891 -19.29389 -18.58202 -16.96236 -16.39680 -16.18590 -15.98004 -15.70245 -15.30480 -14.95697 -14.75514 -14.57894 -14.23648 -13.93277 -13.77818 -13.37272 -13.11311 -12.64066 -12.50566 -12.36944 -12.23123 -12.04360 -11.89092 -11.82196 -11.59806 -11.41266 -11.33274 -11.00918 -10.97495 -10.91972 -10.83217 -10.63044 -10.39919 -10.27010 -10.12797 -10.01758 -9.67137 -9.57746 -9.08669 -8.87851 -8.15666 -6.99754 -5.86856 -3.21648 2.86245 3.28472 3.33909 3.39840 3.40812 3.84167 4.34448 4.49809 4.58797 4.69934 4.91692 5.00487 5.05672 5.12562 5.19537 5.19638 5.30013 5.32582 5.38819 5.47711 5.54968 5.61239 5.63719 5.68516 5.72401 5.75605 5.83964 5.85853 5.88642 5.94809 5.98119 6.04680 6.05081 6.13665 6.20245 6.26258 6.38031 6.39530 6.45749 6.52062 6.83251 7.05278 7.14874 7.16709 7.42129 7.78671 7.87217 8.45749 8.92874 9.59914 10.45324 11.28666 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003511 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.893078 B = 7973.891424 C = 8446.778356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.595 5.595 3 C 0.524 3.476 4 O -0.552 6.552 5 C -0.072 4.072 6 C -0.162 4.162 7 C -0.163 4.163 8 C -0.058 4.058 9 C -0.166 4.166 10 C 0.063 3.937 11 O -0.388 6.388 12 C 0.063 3.937 13 C -0.155 4.155 14 C 0.063 3.937 15 C 0.147 3.853 16 N -0.604 5.604 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.106 3.894 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.135 0.865 45 H 0.030 0.970 46 H 0.085 0.915 47 H 0.255 0.745 48 H 0.048 0.952 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 15.228 4.767 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.326 5.326 3 C 0.312 3.688 4 O -0.431 6.431 5 C -0.075 4.075 6 C -0.219 4.219 7 C -0.220 4.220 8 C -0.077 4.077 9 C -0.203 4.203 10 C -0.013 4.013 11 O -0.307 6.307 12 C -0.014 4.014 13 C -0.192 4.192 14 C -0.041 4.041 15 C 0.021 3.979 16 N -0.331 5.331 17 C -0.353 4.353 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.022 4.022 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.152 0.848 45 H 0.048 0.952 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.776 15.500 4.453 16.820 hybrid contribution -0.386 -1.380 0.244 1.454 sum 4.390 14.120 4.697 15.515 Atomic orbital electron populations 1.21586 0.79776 1.02527 1.01798 1.47976 1.06781 1.06260 1.71593 1.20529 0.89652 0.83196 0.75406 1.90535 1.70388 1.31209 1.50975 1.20679 0.91824 0.97033 0.97989 1.22358 1.02083 1.01710 0.95740 1.22349 1.01817 1.01605 0.96237 1.20911 0.94354 0.93365 0.99074 1.22636 1.04260 0.95539 0.97908 1.22588 0.80574 0.96728 1.01455 1.87896 1.21918 1.77756 1.43119 1.22540 0.99285 0.91830 0.87768 1.22370 0.95964 0.97633 1.03279 1.24727 0.98392 0.80733 1.00233 1.22780 0.97644 0.83466 0.93997 1.45673 1.83044 1.02457 1.01945 1.18988 1.43060 0.80253 0.93027 0.90084 1.24785 1.02009 0.98218 0.95107 1.69809 1.55777 1.34038 0.96691 0.86095 0.77523 0.84900 0.77206 1.21606 1.21598 1.20483 1.23032 0.98211 0.87580 0.93331 0.92838 0.91025 0.91123 0.89792 0.91369 0.92423 0.91471 0.91289 0.90159 0.90945 0.91244 0.87689 0.93526 0.89242 0.93537 0.89188 0.90660 0.90509 0.84808 0.95221 0.89697 0.93507 0.93435 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 9.07 59.84 0.54 1.83 16 2 N -0.59 -9.46 3.09 -175.76 -0.54 -10.00 16 3 C 0.52 8.15 6.23 -10.98 -0.07 8.08 16 4 O -0.55 -9.60 13.11 5.56 0.07 -9.52 16 5 C -0.07 -0.93 0.30 -155.66 -0.05 -0.98 16 6 C -0.16 -1.93 7.70 37.16 0.29 -1.64 16 7 C -0.16 -2.11 7.08 37.16 0.26 -1.85 16 8 C -0.06 -0.69 1.29 -90.43 -0.12 -0.81 16 9 C -0.17 -2.07 4.83 -26.58 -0.13 -2.19 16 10 C 0.06 0.71 6.84 37.21 0.25 0.96 16 11 O -0.39 -4.71 10.77 -35.23 -0.38 -5.09 16 12 C 0.06 0.61 6.84 37.20 0.25 0.87 16 13 C -0.15 -1.55 4.74 -26.59 -0.13 -1.68 16 14 C 0.06 1.09 1.83 -70.15 -0.13 0.96 16 15 C 0.15 3.23 7.24 -2.84 -0.02 3.21 16 16 N -0.60 -14.49 3.70 -177.90 -0.66 -15.14 16 17 C -0.23 -6.02 10.69 -15.05 -0.16 -6.18 16 18 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 19 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 20 N -0.92 -25.93 11.30 55.49 0.63 -25.30 16 21 Si 0.91 21.32 29.56 -169.99 -5.02 16.30 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.11 2.00 8.10 -2.97 -0.02 1.97 16 26 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 27 H 0.07 1.06 6.40 -51.93 -0.33 0.73 16 28 H 0.07 1.02 7.38 -51.93 -0.38 0.63 16 29 H 0.08 1.12 3.84 -51.93 -0.20 0.92 16 30 H 0.07 0.69 6.51 -51.93 -0.34 0.35 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.85 5.65 -51.93 -0.29 0.56 16 33 H 0.07 0.79 7.26 -51.93 -0.38 0.42 16 34 H 0.08 1.20 5.07 -51.93 -0.26 0.93 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.88 5.96 -51.93 -0.31 0.57 16 37 H 0.11 1.52 5.47 -51.93 -0.28 1.23 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.66 6.62 -51.93 -0.34 0.32 16 43 H 0.08 0.80 6.71 -51.93 -0.35 0.45 16 44 H 0.13 2.22 3.06 -51.93 -0.16 2.06 16 45 H 0.03 0.67 7.04 -51.93 -0.37 0.30 16 46 H 0.08 2.08 6.88 -51.93 -0.36 1.73 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.05 0.85 7.68 -51.93 -0.40 0.45 16 49 H 0.04 0.70 6.56 -51.93 -0.34 0.36 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -29.99 352.30 -7.51 -37.50 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.59 Total: 3.61 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 0.68 Total: 2.35 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.57 Total: -50.45 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.31 Total: -14.61 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.99 -7.51 -37.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043277187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.449 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds