Wall clock time and date at job start Tue Mar 31 2020 09:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34785 * 120.00232 * 2 1 4 4 O 1.21279 * 119.99431 * 355.74474 * 3 2 1 5 5 C 1.50700 * 119.99850 * 176.01137 * 3 2 1 6 6 C 1.52997 * 109.47465 * 304.13655 * 5 3 2 7 7 C 1.53004 * 109.46698 * 64.13665 * 5 3 2 8 8 C 1.53004 * 109.46626 * 184.13348 * 5 3 2 9 9 C 1.53178 * 109.54535 * 299.82376 * 8 5 3 10 10 C 1.53108 * 109.15535 * 183.24296 * 9 8 5 11 11 O 1.42897 * 109.48727 * 57.47716 * 10 9 8 12 12 C 1.42907 * 114.09819 * 298.88903 * 11 10 9 13 13 C 1.53089 * 109.41470 * 61.15703 * 12 11 10 14 14 C 1.46497 * 119.99903 * 180.02562 * 2 1 3 15 15 C 1.53945 * 113.74605 * 42.56403 * 14 2 1 16 16 N 1.47809 * 86.03617 * 222.08710 * 15 14 2 17 17 C 1.36944 * 134.45405 * 204.64528 * 16 15 14 18 18 H 1.07995 * 119.99995 * 184.01535 * 17 16 15 19 19 C 1.38817 * 119.99939 * 4.00898 * 17 16 15 20 20 N 1.31625 * 119.99852 * 6.19477 * 19 17 16 21 21 Si 1.86797 * 120.00094 * 186.19222 * 19 17 16 22 22 H 1.48500 * 109.46915 * 94.97200 * 21 19 17 23 23 H 1.48498 * 109.47341 * 214.97888 * 21 19 17 24 24 H 1.48501 * 109.46806 * 334.97797 * 21 19 17 25 25 C 1.47575 * 91.05269 * 24.54630 * 16 15 14 26 26 H 1.09003 * 109.47565 * 93.34490 * 1 2 3 27 27 H 1.08998 * 109.47431 * 213.34854 * 1 2 3 28 28 H 1.09000 * 109.46937 * 333.35077 * 1 2 3 29 29 H 1.08997 * 109.47030 * 60.02346 * 6 5 3 30 30 H 1.09003 * 109.47004 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47248 * 300.02675 * 6 5 3 32 32 H 1.09003 * 109.47194 * 77.68686 * 7 5 3 33 33 H 1.09006 * 109.46847 * 197.67694 * 7 5 3 34 34 H 1.08992 * 109.47612 * 317.68090 * 7 5 3 35 35 H 1.08996 * 109.54283 * 60.00307 * 8 5 3 36 36 H 1.08999 * 109.51996 * 303.05986 * 9 8 5 37 37 H 1.09001 * 109.51786 * 63.25084 * 9 8 5 38 38 H 1.09003 * 109.40191 * 297.49303 * 10 9 8 39 39 H 1.09000 * 109.48725 * 177.51492 * 10 9 8 40 40 H 1.08997 * 109.47664 * 301.17729 * 12 11 10 41 41 H 1.09005 * 109.49026 * 181.14606 * 12 11 10 42 42 H 1.09007 * 109.52403 * 182.48720 * 13 12 11 43 43 H 1.09001 * 109.52108 * 62.30011 * 13 12 11 44 44 H 1.09000 * 112.94382 * 174.15862 * 14 2 1 45 45 H 1.08998 * 113.76436 * 336.35058 * 15 14 2 46 46 H 1.08997 * 113.76599 * 107.74407 * 15 14 2 47 47 H 0.96993 * 119.99553 * 179.97438 * 20 19 17 48 48 H 1.09006 * 113.76912 * 221.14785 * 25 16 15 49 49 H 1.08998 * 113.76569 * 89.75623 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5349 2.2161 -0.0779 5 6 3.6432 1.1687 0.0908 6 6 4.0795 0.4018 1.3407 7 6 4.2296 0.4952 -1.1516 8 6 4.1475 2.6108 0.1752 9 6 3.7153 3.3790 -1.0776 10 6 4.2926 4.7960 -1.0221 11 8 5.7154 4.7270 -0.9100 12 6 6.1764 4.0615 0.2677 13 6 5.6767 2.6144 0.2630 14 6 2.1974 -1.2687 -0.0006 15 6 1.6085 -2.3241 -0.9542 16 7 1.8505 -3.2939 0.1346 17 6 2.0494 -4.6479 0.1864 18 1 2.1443 -5.1436 1.1411 19 6 2.1288 -5.3831 -0.9884 20 7 2.1355 -4.7667 -2.1514 21 14 2.2262 -7.2472 -0.9188 22 1 0.8643 -7.8200 -1.0690 23 1 3.0942 -7.7390 -2.0187 24 1 2.7974 -7.6646 0.3869 25 6 1.7943 -2.2176 1.1427 26 1 -0.3634 -0.0600 -1.0259 27 1 -0.3634 -0.8584 0.5649 28 1 -0.3633 0.9185 0.4609 29 1 3.7205 -0.6256 1.2803 30 1 5.1675 0.4033 1.4065 31 1 3.6613 0.8813 2.2257 32 1 4.1940 1.1886 -1.9918 33 1 5.2644 0.2127 -0.9574 34 1 3.6486 -0.3955 -1.3905 35 1 3.7303 3.0918 1.0599 36 1 4.0900 2.8688 -1.9650 37 1 2.6271 3.4287 -1.1170 38 1 3.8847 5.3196 -0.1575 39 1 4.0251 5.3334 -1.9319 40 1 5.7932 4.5755 1.1491 41 1 7.2662 4.0697 0.2871 42 1 5.9900 2.1179 1.1814 43 1 6.0922 2.0884 -0.5966 44 1 3.2746 -1.1374 -0.1027 45 1 0.5532 -2.1717 -1.1802 46 1 2.2143 -2.4995 -1.8432 47 1 2.1914 -5.2804 -2.9722 48 1 2.5482 -2.3084 1.9248 49 1 0.7937 -2.0339 1.5339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043277187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:30 Heat of formation + Delta-G solvation = -28.406087 kcal Electronic energy + Delta-G solvation = -28080.189276 eV Core-core repulsion = 24430.215048 eV Total energy + Delta-G solvation = -3649.974228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19759 -40.27823 -39.24425 -37.08467 -35.79249 -33.85198 -32.65569 -31.97054 -29.54609 -28.46552 -28.10641 -26.60135 -26.34358 -25.15936 -24.45264 -23.10045 -21.43500 -20.56586 -19.78978 -18.77624 -17.60187 -17.36914 -16.91938 -16.88160 -16.72750 -16.43620 -15.93711 -15.67738 -15.63026 -15.24128 -14.92299 -14.53966 -14.29454 -14.02055 -13.77983 -13.64797 -13.41709 -13.39536 -13.13003 -12.96367 -12.91203 -12.77728 -12.67635 -12.59598 -12.36761 -12.07986 -11.96307 -11.91146 -11.82889 -11.54940 -11.52704 -11.43804 -10.99961 -10.85781 -10.51551 -10.21259 -9.54752 -8.92528 -7.89907 -5.25376 1.48269 1.49169 1.58150 1.60175 2.00714 2.49432 3.03808 3.25115 3.31814 3.49450 3.62448 3.72907 3.80192 4.00869 4.13214 4.16285 4.17361 4.26356 4.34283 4.39587 4.41313 4.45361 4.60181 4.63742 4.69849 4.74794 4.78247 4.81052 4.85490 4.88549 4.90058 4.92063 4.92872 5.04221 5.08769 5.16308 5.18376 5.26725 5.29172 5.37558 5.45606 5.50082 5.55241 5.60638 5.91706 6.33258 6.46449 6.90328 7.18450 7.60098 8.52518 9.25068 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003511 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.893078 B = 7973.891424 C = 8446.778356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.598 5.598 3 C 0.520 3.480 4 O -0.569 6.569 5 C -0.068 4.068 6 C -0.159 4.159 7 C -0.160 4.160 8 C -0.055 4.055 9 C -0.163 4.163 10 C 0.065 3.935 11 O -0.404 6.404 12 C 0.057 3.943 13 C -0.149 4.149 14 C 0.099 3.901 15 C 0.143 3.857 16 N -0.631 5.631 17 C -0.233 4.233 18 H 0.086 0.914 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.975 3.025 22 H -0.292 1.292 23 H -0.295 1.295 24 H -0.265 1.265 25 C 0.108 3.892 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.020 0.980 46 H 0.053 0.947 47 H 0.249 0.751 48 H 0.066 0.934 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 15.821 6.440 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.328 5.328 3 C 0.310 3.690 4 O -0.449 6.449 5 C -0.071 4.071 6 C -0.215 4.215 7 C -0.217 4.217 8 C -0.073 4.073 9 C -0.201 4.201 10 C -0.011 4.011 11 O -0.323 6.323 12 C -0.019 4.019 13 C -0.187 4.187 14 C -0.005 4.005 15 C 0.017 3.983 16 N -0.358 5.358 17 C -0.361 4.361 18 H 0.104 0.896 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.804 3.196 22 H -0.219 1.219 23 H -0.221 1.221 24 H -0.189 1.189 25 C -0.017 4.017 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.164 0.836 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.172 16.122 6.164 18.330 hybrid contribution -0.873 -1.480 -0.261 1.738 sum 5.299 14.641 5.903 16.652 Atomic orbital electron populations 1.21609 0.79451 1.02943 1.01700 1.47964 1.07106 1.05954 1.71813 1.21067 0.90875 0.82513 0.74510 1.90540 1.71144 1.31656 1.51553 1.20716 0.89657 0.98156 0.98567 1.22335 1.03648 1.00395 0.95156 1.22312 1.02502 1.00501 0.96337 1.20887 0.95864 0.92203 0.98388 1.22544 1.02788 0.96598 0.98128 1.22577 0.80469 0.95945 1.02133 1.87881 1.21989 1.78130 1.44311 1.22738 1.00426 0.91454 0.87313 1.22350 0.94071 0.98116 1.04140 1.24227 0.98658 0.80374 0.97280 1.22682 0.96771 0.85281 0.93562 1.45961 1.83150 1.02564 1.04144 1.19365 1.41720 0.81860 0.93200 0.89588 1.25560 1.02682 1.02213 0.94942 1.69994 1.57470 1.35147 0.96992 0.85110 0.76999 0.80092 0.77436 1.21943 1.22139 1.18950 1.23176 0.99224 0.85937 0.93408 0.93251 0.90856 0.90385 0.91280 0.89011 0.91808 0.91553 0.89375 0.92444 0.91439 0.91798 0.89921 0.93064 0.88509 0.92699 0.87347 0.88748 0.90724 0.83558 0.96207 0.92836 0.94241 0.91561 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.53 9.07 127.77 1.16 3.69 16 2 N -0.60 -18.63 3.09 -828.35 -2.56 -21.19 16 3 C 0.52 15.71 6.23 87.66 0.55 16.26 16 4 O -0.57 -19.45 13.11 -3.03 -0.04 -19.49 16 5 C -0.07 -1.63 0.30 -52.93 -0.02 -1.65 16 6 C -0.16 -3.32 7.70 71.98 0.55 -2.76 16 7 C -0.16 -3.93 7.08 71.98 0.51 -3.42 16 8 C -0.05 -1.19 1.29 -10.67 -0.01 -1.20 16 9 C -0.16 -3.91 4.83 30.69 0.15 -3.76 16 10 C 0.07 1.38 6.84 72.02 0.49 1.87 16 11 O -0.40 -8.99 10.77 -148.98 -1.60 -10.59 16 12 C 0.06 0.96 6.84 72.01 0.49 1.45 16 13 C -0.15 -2.54 4.74 30.68 0.15 -2.39 16 14 C 0.10 3.36 1.83 46.75 0.09 3.45 16 15 C 0.14 6.42 7.24 86.44 0.63 7.05 16 16 N -0.63 -30.23 3.70 -716.74 -2.65 -32.88 16 17 C -0.23 -12.40 10.69 84.03 0.90 -11.50 16 18 H 0.09 4.36 7.84 -2.91 -0.02 4.34 16 19 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 20 N -0.95 -54.90 11.30 21.65 0.24 -54.65 16 21 Si 0.98 44.02 29.56 68.60 2.03 46.05 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 C 0.11 3.96 8.10 86.49 0.70 4.66 16 26 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 27 H 0.07 2.13 6.40 -2.39 -0.02 2.12 16 28 H 0.08 2.20 7.38 -2.39 -0.02 2.18 16 29 H 0.07 1.67 3.84 -2.39 -0.01 1.66 16 30 H 0.09 1.50 6.51 -2.39 -0.02 1.49 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.63 5.65 -2.39 -0.01 1.62 16 33 H 0.09 1.82 7.26 -2.38 -0.02 1.80 16 34 H 0.06 1.69 5.07 -2.39 -0.01 1.68 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.58 5.96 -2.39 -0.01 1.56 16 37 H 0.08 2.38 5.47 -2.39 -0.01 2.36 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.09 1.26 6.62 -2.38 -0.02 1.25 16 43 H 0.07 1.33 6.71 -2.39 -0.02 1.31 16 44 H 0.15 4.71 3.06 -2.39 -0.01 4.70 16 45 H 0.02 0.93 7.04 -2.39 -0.02 0.91 16 46 H 0.05 2.74 6.88 -2.39 -0.02 2.72 16 47 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 48 H 0.07 2.20 7.68 -2.38 -0.02 2.19 16 49 H 0.05 1.67 6.56 -2.39 -0.02 1.66 16 Total: -1.00 -64.53 352.30 3.17 -61.36 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.96 Total: 22.46 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.80 Total: 8.93 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -4.97 Total: -108.72 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.64 Total: -30.08 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -64.53 3.17 -61.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043277187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.957 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds