Wall clock time and date at job start Tue Mar 31 2020 11:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46468 * 2 1 4 4 C 1.52998 * 109.47728 * 120.00010 * 2 1 3 5 5 C 1.53004 * 109.46805 * 64.99913 * 4 2 1 6 6 H 1.08996 * 115.55785 * 29.31617 * 5 4 2 7 7 C 1.53002 * 117.50034 * 243.62238 * 5 4 2 8 8 C 1.53004 * 60.00094 * 252.51584 * 7 5 4 9 9 H 1.08997 * 117.49955 * 107.51189 * 8 7 5 10 10 C 1.50701 * 117.49662 * 252.51536 * 8 7 5 11 11 O 1.21278 * 120.00330 * 68.60786 * 10 8 7 12 12 N 1.34779 * 119.99520 * 248.60791 * 10 8 7 13 13 C 1.46500 * 119.99857 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47603 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.67915 * 59.81649 * 14 13 12 16 16 C 1.53293 * 109.68950 * 180.37865 * 14 13 12 17 17 O 1.42957 * 109.22678 * 172.02427 * 16 14 13 18 18 C 1.42969 * 114.16513 * 297.42014 * 17 16 14 19 19 C 1.52876 * 109.29499 * 62.44914 * 18 17 16 20 20 N 1.47145 * 108.61188 * 307.93185 * 19 18 17 21 21 C 1.36936 * 120.98298 * 230.50832 * 20 19 18 22 22 H 1.08001 * 120.00075 * 148.72726 * 21 20 19 23 23 C 1.38811 * 119.99931 * 328.44380 * 21 20 19 24 24 N 1.31613 * 120.00062 * 349.75151 * 23 21 20 25 25 Si 1.86801 * 119.99884 * 169.74849 * 23 21 20 26 26 H 1.48503 * 109.47198 * 60.00083 * 25 23 21 27 27 H 1.48498 * 109.46936 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46953 * 300.00140 * 25 23 21 29 29 H 1.08996 * 109.47840 * 59.99717 * 1 2 3 30 30 H 1.09006 * 109.46800 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46788 * 299.99282 * 1 2 3 32 32 H 1.09001 * 109.47159 * 240.00351 * 2 1 3 33 33 H 1.09003 * 109.46780 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47657 * 299.99932 * 3 2 1 35 35 H 1.09001 * 109.47144 * 60.00341 * 3 2 1 36 36 H 1.09006 * 109.46682 * 305.00645 * 4 2 1 37 37 H 1.08995 * 109.47494 * 185.00422 * 4 2 1 38 38 H 1.09002 * 117.49547 * 145.02261 * 7 5 4 39 39 H 1.08997 * 117.49677 * 0.02562 * 7 5 4 40 40 H 0.96992 * 120.00262 * 359.97438 * 12 10 8 41 41 H 1.09007 * 109.47398 * 59.99487 * 13 12 10 42 42 H 1.09003 * 109.47231 * 299.99928 * 13 12 10 43 43 H 1.08995 * 109.50706 * 291.95015 * 16 14 13 44 44 H 1.09002 * 109.50842 * 52.09864 * 16 14 13 45 45 H 1.08995 * 109.50870 * 182.50575 * 18 17 16 46 46 H 1.08996 * 109.51068 * 302.65263 * 18 17 16 47 47 H 1.09004 * 109.61389 * 188.11204 * 19 18 17 48 48 H 1.08995 * 109.52739 * 67.70571 * 19 18 17 49 49 H 0.97000 * 120.00463 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 1 1.5390 -2.6154 0.1867 7 6 0.6792 -2.7110 2.2654 8 6 2.1542 -3.1170 2.2936 9 1 2.7836 -2.6732 3.0649 10 6 2.4926 -4.5359 1.9151 11 8 2.3500 -4.9084 0.7698 12 7 2.9539 -5.3908 2.8493 13 6 3.2835 -6.7699 2.4813 14 6 3.7815 -7.5225 3.7167 15 1 3.0056 -7.5254 4.4823 16 6 4.1369 -8.9640 3.3351 17 8 4.7727 -9.6018 4.4453 18 6 6.0104 -9.0017 4.8348 19 6 5.7541 -7.5647 5.2894 20 7 4.9917 -6.8693 4.2405 21 6 5.3996 -5.6529 3.7617 22 1 5.1993 -5.3817 2.7356 23 6 6.0652 -4.7660 4.5968 24 7 6.1280 -5.0011 5.8902 25 14 6.8717 -3.2390 3.8846 26 1 5.8428 -2.4008 3.2182 27 1 7.5121 -2.4626 4.9765 28 1 7.9018 -3.6400 2.8930 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9565 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.6054 -0.2617 2.1369 37 1 3.1264 -0.6442 1.2951 38 1 -0.0462 -3.4701 1.9730 39 1 0.3382 -1.9998 3.0176 40 1 3.0684 -5.0927 3.7652 41 1 4.0633 -6.7663 1.7196 42 1 2.3945 -7.2636 2.0886 43 1 3.2278 -9.5063 3.0752 44 1 4.8147 -8.9579 2.4815 45 1 6.4493 -9.5713 5.6540 46 1 6.6951 -8.9959 3.9867 47 1 6.7050 -7.0567 5.4501 48 1 5.1805 -7.5727 6.2162 49 1 6.5928 -4.3812 6.4738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051123729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:55 Heat of formation + Delta-G solvation = -50.847782 kcal Electronic energy + Delta-G solvation = -26959.980641 eV Core-core repulsion = 23309.033268 eV Total energy + Delta-G solvation = -3650.947373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -39.66647 -38.54965 -37.39595 -35.39674 -34.75894 -33.54395 -31.53675 -30.46375 -27.76410 -27.23947 -27.22313 -25.81627 -23.49228 -23.22563 -21.59870 -21.01897 -20.02415 -19.77702 -19.31429 -17.17053 -16.37449 -15.90982 -15.74900 -15.25295 -14.94912 -14.71287 -14.54539 -14.23074 -14.10239 -13.83913 -13.70922 -13.52120 -13.09119 -12.95233 -12.69521 -12.44000 -12.20813 -11.93485 -11.79063 -11.61528 -11.48675 -11.19151 -11.05471 -10.94129 -10.88917 -10.76783 -10.69894 -10.42852 -10.28130 -10.06695 -10.04381 -9.81434 -9.67855 -9.36397 -8.96584 -8.68092 -8.24782 -6.74262 -5.92262 -3.42242 3.00493 3.27217 3.34047 3.36769 3.73246 4.06531 4.32704 4.51616 4.65141 4.81629 4.87147 5.05422 5.10267 5.12732 5.21556 5.25499 5.48300 5.54442 5.57733 5.59761 5.63770 5.66455 5.71458 5.73773 5.80425 5.85789 5.87290 5.98856 6.01332 6.06621 6.12278 6.14505 6.17594 6.22705 6.24150 6.28501 6.33307 6.46938 6.51460 6.75248 7.05807 7.14024 7.47295 7.68708 7.85438 8.24915 8.29055 8.86959 9.04273 9.64384 10.23672 11.14343 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.003901 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.413226 B = 7175.923591 C = 8485.392361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.087 4.087 5 C -0.116 4.116 6 H 0.115 0.885 7 C -0.151 4.151 8 C -0.184 4.184 9 H 0.123 0.877 10 C 0.538 3.462 11 O -0.567 6.567 12 N -0.690 5.690 13 C 0.136 3.864 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.035 3.965 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.256 4.256 22 H 0.073 0.927 23 C 0.010 3.990 24 N -0.900 5.900 25 Si 0.897 3.103 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.283 1.283 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.416 0.584 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.092 0.908 48 H 0.029 0.971 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 5.197 -5.738 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.124 4.124 5 C -0.135 4.135 6 H 0.133 0.867 7 C -0.188 4.188 8 C -0.205 4.205 9 H 0.141 0.859 10 C 0.324 3.676 11 O -0.447 6.447 12 N -0.340 5.340 13 C 0.012 3.988 14 C 0.018 3.982 15 H 0.059 0.941 16 C -0.023 4.023 17 O -0.311 6.311 18 C -0.043 4.043 19 C 0.018 3.982 20 N -0.317 5.317 21 C -0.385 4.385 22 H 0.091 0.909 23 C -0.189 4.189 24 N -0.544 5.544 25 Si 0.726 3.274 26 H -0.205 1.205 27 H -0.216 1.216 28 H -0.210 1.210 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.254 0.746 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.058 0.942 47 H 0.110 0.890 48 H 0.047 0.953 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.484 4.868 -6.278 11.623 hybrid contribution 0.880 1.167 0.201 1.475 sum -7.604 6.034 -6.077 11.452 Atomic orbital electron populations 1.21841 0.95217 1.02056 1.01160 1.21103 0.95979 0.95820 0.98396 1.21849 1.01049 0.96126 1.01502 1.21295 1.01042 0.92206 0.97894 1.22347 1.01769 0.93882 0.95486 0.86673 1.23042 0.90950 1.03102 1.01733 1.22331 0.99269 0.94473 1.04462 0.85910 1.19517 0.76978 0.86018 0.85070 1.90615 1.55607 1.78512 1.19986 1.45938 1.63528 1.11182 1.13384 1.21153 0.98840 0.81672 0.97183 1.21425 0.90821 0.91890 0.94050 0.94116 1.22865 0.96845 0.93819 0.88798 1.87802 1.37395 1.55326 1.50586 1.23279 0.85107 0.97184 0.98726 1.21324 0.98415 0.88084 0.90336 1.44068 1.23290 1.19583 1.44736 1.19195 1.33793 0.91230 0.94287 0.90934 1.25143 1.01309 0.97582 0.94906 1.69965 1.44864 1.37434 1.02110 0.86461 0.79825 0.83092 0.78013 1.20527 1.21557 1.20972 0.93214 0.92189 0.92919 0.91082 0.92704 0.92870 0.92790 0.91648 0.91354 0.88640 0.88233 0.74616 0.91592 0.92439 0.89916 0.93511 0.90202 0.94161 0.88985 0.95311 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.01 37.16 0.33 -1.00 16 2 C -0.09 -0.96 2.88 -90.62 -0.26 -1.22 16 3 C -0.15 -1.34 9.19 37.16 0.34 -0.99 16 4 C -0.09 -1.01 4.96 -26.73 -0.13 -1.15 16 5 C -0.12 -1.57 4.24 -90.61 -0.38 -1.96 16 6 H 0.12 1.72 7.60 -51.93 -0.39 1.32 16 7 C -0.15 -1.90 9.88 -26.73 -0.26 -2.16 16 8 C -0.18 -2.89 5.91 -91.77 -0.54 -3.44 16 9 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 10 C 0.54 10.17 7.61 -10.98 -0.08 10.09 16 11 O -0.57 -12.12 16.26 5.56 0.09 -12.03 16 12 N -0.69 -13.16 3.77 -60.29 -0.23 -13.39 16 13 C 0.14 2.55 4.45 -4.05 -0.02 2.53 16 14 C 0.13 2.45 3.21 -67.42 -0.22 2.24 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.06 0.99 6.29 37.31 0.23 1.23 16 17 O -0.39 -7.65 10.74 -35.23 -0.38 -8.03 16 18 C 0.03 0.67 6.97 37.09 0.26 0.93 16 19 C 0.14 3.26 5.35 -3.75 -0.02 3.24 16 20 N -0.59 -13.59 3.04 -164.56 -0.50 -14.09 16 21 C -0.26 -6.30 7.07 -15.06 -0.11 -6.41 16 22 H 0.07 1.83 5.80 -52.49 -0.30 1.53 16 23 C 0.01 0.26 5.07 -17.43 -0.09 0.17 16 24 N -0.90 -24.04 11.13 55.49 0.62 -23.42 16 25 Si 0.90 20.63 29.57 -169.99 -5.03 15.60 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.58 7.38 -51.93 -0.38 0.20 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.06 8.03 -51.93 -0.42 0.65 16 40 H 0.42 8.29 7.32 -40.82 -0.30 7.99 16 41 H 0.07 1.35 7.56 -51.93 -0.39 0.95 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 2.29 6.34 -51.93 -0.33 1.96 16 48 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -28.29 384.40 -9.41 -37.69 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.83 Total: 9.78 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.95 Total: 2.10 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.11 Total: -50.90 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.29 Total: -20.07 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.29 -9.41 -37.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051123729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.154 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds