Wall clock time and date at job start Tue Mar 31 2020 10:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47046 * 2 1 4 4 C 1.53003 * 109.46788 * 59.99991 * 3 2 1 5 5 C 1.52996 * 109.46941 * 300.00274 * 3 2 1 6 6 C 1.50696 * 109.47166 * 180.02562 * 3 2 1 7 7 O 1.21282 * 119.99676 * 5.82886 * 6 3 2 8 8 N 1.34775 * 120.00106 * 185.83340 * 6 3 2 9 9 C 1.45321 * 119.60442 * 177.18088 * 8 6 3 10 10 C 1.53155 * 108.72204 * 125.31560 * 9 8 6 11 11 C 1.52511 * 109.79512 * 53.84358 * 10 9 8 12 12 H 1.08997 * 108.93447 * 180.33728 * 11 10 9 13 13 O 1.42687 * 110.62254 * 61.29339 * 11 10 9 14 14 C 1.43085 * 113.86618 * 174.64489 * 13 11 10 15 15 C 1.53225 * 109.44533 * 61.65132 * 14 13 11 16 16 N 1.49263 * 109.26747 * 308.34258 * 15 14 13 17 17 C 1.36935 * 122.54579 * 231.32510 * 16 15 14 18 18 H 1.08000 * 120.00817 * 147.64335 * 17 16 15 19 19 C 1.38818 * 119.99596 * 327.65015 * 17 16 15 20 20 N 1.31623 * 119.99900 * 343.64363 * 19 17 16 21 21 Si 1.86794 * 119.99868 * 163.64443 * 19 17 16 22 22 H 1.48496 * 109.47412 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.47250 * 119.99931 * 21 19 17 24 24 H 1.48497 * 109.47181 * 239.99661 * 21 19 17 25 25 C 1.47597 * 116.22827 * 50.32102 * 16 15 14 26 26 H 1.09001 * 110.31640 * 187.65621 * 25 16 15 27 27 C 1.46797 * 120.72228 * 355.77654 * 8 6 3 28 28 H 1.08993 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46845 * 299.99960 * 1 2 3 30 30 H 1.09002 * 109.47239 * 59.99979 * 1 2 3 31 31 H 1.08996 * 109.47107 * 240.00494 * 2 1 3 32 32 H 1.08998 * 109.46804 * 119.99824 * 2 1 3 33 33 H 1.08998 * 109.46875 * 171.52503 * 4 3 2 34 34 H 1.08997 * 109.47471 * 291.51880 * 4 3 2 35 35 H 1.08997 * 109.47583 * 51.52604 * 4 3 2 36 36 H 1.08998 * 109.47277 * 310.23440 * 5 3 2 37 37 H 1.09000 * 109.47666 * 70.23194 * 5 3 2 38 38 H 1.09002 * 109.47006 * 190.23683 * 5 3 2 39 39 H 1.08995 * 110.06951 * 5.20504 * 9 8 6 40 40 H 1.09002 * 109.10867 * 244.85855 * 9 8 6 41 41 H 1.08994 * 109.42024 * 293.74083 * 10 9 8 42 42 H 1.09007 * 109.41805 * 173.94027 * 10 9 8 43 43 H 1.09003 * 109.47126 * 181.63960 * 14 13 11 44 44 H 1.08997 * 109.47796 * 301.65065 * 14 13 11 45 45 H 1.09003 * 109.59954 * 68.18161 * 15 14 13 46 46 H 1.09004 * 109.59729 * 188.49529 * 15 14 13 47 47 H 0.96992 * 119.99917 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.52323 * 114.39485 * 27 8 6 49 49 H 1.09001 * 109.52110 * 354.27101 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.5300 2.1638 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4426 -0.0006 7 8 4.1534 0.3977 -0.1077 8 7 4.2210 2.6037 0.1179 9 6 5.6728 2.5882 0.1781 10 6 6.2201 3.5103 -0.9154 11 6 5.5929 4.8944 -0.7856 12 1 5.9871 5.5366 -1.5732 13 8 5.9181 5.4772 0.4755 14 6 5.4660 6.8267 0.6234 15 6 3.9376 6.8665 0.5228 16 7 3.5071 6.1582 -0.7185 17 6 2.6555 6.7220 -1.6307 18 1 2.7538 6.4851 -2.6798 19 6 1.6657 7.5983 -1.2069 20 7 1.3293 7.6458 0.0648 21 14 0.8114 8.7098 -2.4413 22 1 1.3682 8.4654 -3.7960 23 1 -0.6450 8.4189 -2.4443 24 1 1.0318 10.1292 -2.0647 25 6 4.0701 4.8101 -0.9289 26 1 3.8033 4.4388 -1.9185 27 6 3.5060 3.8853 0.1559 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0117 3.1383 1.3283 34 1 0.4506 2.2969 1.1768 35 1 1.7644 1.5700 2.1328 36 1 1.7365 1.5554 -2.1297 37 1 0.4554 2.3246 -1.1627 38 1 2.0347 3.1251 -1.3452 39 1 6.0428 1.5749 0.0220 40 1 5.9933 2.9486 1.1557 41 1 5.9804 3.0941 -1.8938 42 1 7.3023 3.5917 -0.8127 43 1 5.7763 7.2093 1.5958 44 1 5.8984 7.4433 -0.1646 45 1 3.5010 6.3725 1.3909 46 1 3.6006 7.9024 0.4837 47 1 0.6375 8.2578 0.3608 48 1 3.6390 4.3477 1.1339 49 1 2.4447 3.7158 -0.0257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074325019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:34 Heat of formation + Delta-G solvation = -47.417681 kcal Electronic energy + Delta-G solvation = -28986.927927 eV Core-core repulsion = 25336.129295 eV Total energy + Delta-G solvation = -3650.798633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.68321 -38.81413 -36.32409 -35.68515 -34.56003 -32.08644 -31.55233 -30.22319 -29.09839 -27.46819 -27.17761 -25.50543 -24.05850 -23.89515 -22.79592 -21.80955 -20.34140 -18.88334 -18.19722 -16.99621 -16.37047 -15.83278 -15.53078 -15.30312 -15.12196 -14.67058 -14.55570 -14.33389 -14.00355 -13.76363 -13.55674 -13.18148 -12.81535 -12.71317 -12.55630 -12.40164 -12.14597 -12.05082 -11.73835 -11.54868 -11.35258 -11.25750 -11.09132 -11.02617 -10.93885 -10.80390 -10.63010 -10.50453 -10.47039 -10.28860 -10.06287 -9.93808 -9.66563 -9.18179 -9.03437 -8.65604 -8.20204 -6.78042 -5.96756 -3.43995 2.96048 3.26079 3.35261 3.36432 3.42063 4.28745 4.33248 4.67024 4.86398 5.02970 5.09370 5.20418 5.21887 5.33999 5.35945 5.46400 5.55516 5.56279 5.61836 5.71017 5.74155 5.83874 5.90124 5.93350 5.98385 6.03909 6.04336 6.06234 6.09307 6.15499 6.18023 6.20801 6.25085 6.30298 6.31475 6.38126 6.47689 6.50934 6.62934 6.74316 6.93877 6.97854 7.30208 7.63947 7.80491 7.83559 8.20270 8.53086 8.95253 9.58698 10.22968 11.11502 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.006085 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.834826 B = 4600.070844 C = 6149.353554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.079 4.079 4 C -0.161 4.161 5 C -0.156 4.156 6 C 0.523 3.477 7 O -0.559 6.559 8 N -0.600 5.600 9 C 0.114 3.886 10 C -0.122 4.122 11 C 0.080 3.920 12 H 0.050 0.950 13 O -0.386 6.386 14 C 0.041 3.959 15 C 0.136 3.864 16 N -0.583 5.583 17 C -0.258 4.258 18 H 0.066 0.934 19 C 0.015 3.985 20 N -0.893 5.893 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.131 3.869 26 H 0.074 0.926 27 C 0.080 3.920 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.034 0.966 46 H 0.083 0.917 47 H 0.255 0.745 48 H 0.070 0.930 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -8.095 0.990 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.218 4.218 5 C -0.213 4.213 6 C 0.312 3.688 7 O -0.438 6.438 8 N -0.331 5.331 9 C -0.009 4.009 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.068 0.932 13 O -0.305 6.305 14 C -0.037 4.037 15 C 0.011 3.989 16 N -0.306 5.306 17 C -0.388 4.388 18 H 0.084 0.916 19 C -0.186 4.186 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.215 1.215 25 C 0.022 3.978 26 H 0.092 0.908 27 C -0.043 4.043 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.225 -8.569 1.161 9.229 hybrid contribution -0.661 1.036 -0.705 1.417 sum 2.564 -7.533 0.457 7.971 Atomic orbital electron populations 1.21885 0.95687 1.01321 1.02263 1.21334 0.95272 0.93940 1.02767 1.20720 0.91494 0.97874 0.98107 1.22344 1.02254 1.01680 0.95525 1.22214 1.02323 1.01322 0.95403 1.20626 0.89886 0.83141 0.75185 1.90608 1.70431 1.31604 1.51127 1.47833 1.06783 1.06891 1.71631 1.21167 0.80309 1.00420 0.98978 1.21796 1.00491 0.94204 0.99569 1.22252 0.95960 0.93362 0.86340 0.93185 1.87747 1.79061 1.28150 1.35566 1.23259 0.97707 0.82575 1.00193 1.21727 0.89112 0.99165 0.88877 1.44605 1.52406 1.09974 1.23594 1.19075 1.07691 1.23970 0.88020 0.91643 1.25143 0.96099 1.01282 0.96077 1.70018 1.31382 1.37876 1.14260 0.86269 0.79176 0.80619 0.80948 1.20139 1.21518 1.21450 1.21632 0.91671 0.87383 0.97097 0.90838 1.23068 0.98080 0.81703 1.01430 0.92977 0.92403 0.92329 0.91516 0.91837 0.89878 0.91323 0.92664 0.92475 0.91214 0.89924 0.89460 0.91362 0.90615 0.90651 0.90019 0.94076 0.94767 0.89885 0.93470 0.91177 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.23 37.16 0.34 -1.37 16 2 C -0.10 -1.27 4.27 -26.72 -0.11 -1.38 16 3 C -0.08 -1.16 0.52 -155.66 -0.08 -1.24 16 4 C -0.16 -2.29 7.48 37.16 0.28 -2.01 16 5 C -0.16 -2.26 7.43 37.16 0.28 -1.99 16 6 C 0.52 8.91 6.46 -10.99 -0.07 8.84 16 7 O -0.56 -10.77 15.28 5.56 0.08 -10.68 16 8 N -0.60 -9.99 2.93 -174.10 -0.51 -10.50 16 9 C 0.11 1.78 6.18 -4.60 -0.03 1.75 16 10 C -0.12 -1.79 5.83 -26.90 -0.16 -1.95 16 11 C 0.08 1.40 2.74 -26.88 -0.07 1.33 16 12 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 13 O -0.39 -7.03 9.61 -35.23 -0.34 -7.37 16 14 C 0.04 0.73 6.98 37.27 0.26 1.00 16 15 C 0.14 2.93 5.02 -2.39 -0.01 2.92 16 16 N -0.58 -13.12 2.75 -162.15 -0.45 -13.56 16 17 C -0.26 -6.45 9.66 -15.06 -0.15 -6.60 16 18 H 0.07 1.64 7.88 -52.49 -0.41 1.23 16 19 C 0.01 0.37 4.99 -17.43 -0.09 0.28 16 20 N -0.89 -23.69 11.66 55.49 0.65 -23.04 16 21 Si 0.90 20.27 29.58 -169.99 -5.03 15.24 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.13 2.52 2.76 -67.07 -0.19 2.33 16 26 H 0.07 1.45 7.71 -51.93 -0.40 1.05 16 27 C 0.08 1.45 3.04 -3.72 -0.01 1.43 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.62 6.63 -51.93 -0.34 0.28 16 30 H 0.06 0.64 6.67 -51.93 -0.35 0.29 16 31 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.32 4.39 -51.93 -0.23 1.10 16 34 H 0.07 0.90 6.82 -51.93 -0.35 0.54 16 35 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.07 0.94 6.91 -51.93 -0.36 0.58 16 38 H 0.08 1.37 4.66 -51.93 -0.24 1.13 16 39 H 0.09 1.36 6.89 -51.93 -0.36 1.00 16 40 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.03 0.78 7.15 -51.93 -0.37 0.41 16 46 H 0.08 1.98 6.73 -51.93 -0.35 1.63 16 47 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 48 H 0.07 1.38 6.39 -51.93 -0.33 1.05 16 49 H 0.11 2.01 2.83 -51.93 -0.15 1.87 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -27.53 354.88 -8.06 -35.59 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.01 Total: 5.62 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 0.19 Total: 3.36 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.31 Total: -47.11 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.25 Total: -18.05 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.53 -8.06 -35.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074325019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.824 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds