Wall clock time and date at job start Tue Mar 31 2020 10:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47046 * 2 1 4 4 C 1.53003 * 109.46788 * 59.99991 * 3 2 1 5 5 C 1.52996 * 109.46941 * 300.00274 * 3 2 1 6 6 C 1.50696 * 109.47166 * 180.02562 * 3 2 1 7 7 O 1.21282 * 119.99676 * 5.82886 * 6 3 2 8 8 N 1.34775 * 120.00106 * 185.83340 * 6 3 2 9 9 C 1.45321 * 119.60442 * 177.18088 * 8 6 3 10 10 C 1.53155 * 108.72204 * 125.31560 * 9 8 6 11 11 C 1.52511 * 109.79512 * 53.84358 * 10 9 8 12 12 H 1.08997 * 108.93447 * 180.33728 * 11 10 9 13 13 O 1.42687 * 110.62254 * 61.29339 * 11 10 9 14 14 C 1.43085 * 113.86618 * 174.64489 * 13 11 10 15 15 C 1.53225 * 109.44533 * 61.65132 * 14 13 11 16 16 N 1.49263 * 109.26747 * 308.34258 * 15 14 13 17 17 C 1.36935 * 122.54579 * 231.32510 * 16 15 14 18 18 H 1.08000 * 120.00817 * 147.64335 * 17 16 15 19 19 C 1.38818 * 119.99596 * 327.65015 * 17 16 15 20 20 N 1.31623 * 119.99900 * 343.64363 * 19 17 16 21 21 Si 1.86794 * 119.99868 * 163.64443 * 19 17 16 22 22 H 1.48496 * 109.47412 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.47250 * 119.99931 * 21 19 17 24 24 H 1.48497 * 109.47181 * 239.99661 * 21 19 17 25 25 C 1.47597 * 116.22827 * 50.32102 * 16 15 14 26 26 H 1.09001 * 110.31640 * 187.65621 * 25 16 15 27 27 C 1.46797 * 120.72228 * 355.77654 * 8 6 3 28 28 H 1.08993 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46845 * 299.99960 * 1 2 3 30 30 H 1.09002 * 109.47239 * 59.99979 * 1 2 3 31 31 H 1.08996 * 109.47107 * 240.00494 * 2 1 3 32 32 H 1.08998 * 109.46804 * 119.99824 * 2 1 3 33 33 H 1.08998 * 109.46875 * 171.52503 * 4 3 2 34 34 H 1.08997 * 109.47471 * 291.51880 * 4 3 2 35 35 H 1.08997 * 109.47583 * 51.52604 * 4 3 2 36 36 H 1.08998 * 109.47277 * 310.23440 * 5 3 2 37 37 H 1.09000 * 109.47666 * 70.23194 * 5 3 2 38 38 H 1.09002 * 109.47006 * 190.23683 * 5 3 2 39 39 H 1.08995 * 110.06951 * 5.20504 * 9 8 6 40 40 H 1.09002 * 109.10867 * 244.85855 * 9 8 6 41 41 H 1.08994 * 109.42024 * 293.74083 * 10 9 8 42 42 H 1.09007 * 109.41805 * 173.94027 * 10 9 8 43 43 H 1.09003 * 109.47126 * 181.63960 * 14 13 11 44 44 H 1.08997 * 109.47796 * 301.65065 * 14 13 11 45 45 H 1.09003 * 109.59954 * 68.18161 * 15 14 13 46 46 H 1.09004 * 109.59729 * 188.49529 * 15 14 13 47 47 H 0.96992 * 119.99917 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.52323 * 114.39485 * 27 8 6 49 49 H 1.09001 * 109.52110 * 354.27101 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.5300 2.1638 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4426 -0.0006 7 8 4.1534 0.3977 -0.1077 8 7 4.2210 2.6037 0.1179 9 6 5.6728 2.5882 0.1781 10 6 6.2201 3.5103 -0.9154 11 6 5.5929 4.8944 -0.7856 12 1 5.9871 5.5366 -1.5732 13 8 5.9181 5.4772 0.4755 14 6 5.4660 6.8267 0.6234 15 6 3.9376 6.8665 0.5228 16 7 3.5071 6.1582 -0.7185 17 6 2.6555 6.7220 -1.6307 18 1 2.7538 6.4851 -2.6798 19 6 1.6657 7.5983 -1.2069 20 7 1.3293 7.6458 0.0648 21 14 0.8114 8.7098 -2.4413 22 1 1.3682 8.4654 -3.7960 23 1 -0.6450 8.4189 -2.4443 24 1 1.0318 10.1292 -2.0647 25 6 4.0701 4.8101 -0.9289 26 1 3.8033 4.4388 -1.9185 27 6 3.5060 3.8853 0.1559 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0117 3.1383 1.3283 34 1 0.4506 2.2969 1.1768 35 1 1.7644 1.5700 2.1328 36 1 1.7365 1.5554 -2.1297 37 1 0.4554 2.3246 -1.1627 38 1 2.0347 3.1251 -1.3452 39 1 6.0428 1.5749 0.0220 40 1 5.9933 2.9486 1.1557 41 1 5.9804 3.0941 -1.8938 42 1 7.3023 3.5917 -0.8127 43 1 5.7763 7.2093 1.5958 44 1 5.8984 7.4433 -0.1646 45 1 3.5010 6.3725 1.3909 46 1 3.6006 7.9024 0.4837 47 1 0.6375 8.2578 0.3608 48 1 3.6390 4.3477 1.1339 49 1 2.4447 3.7158 -0.0257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074325019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:33 Heat of formation + Delta-G solvation = -62.587101 kcal Electronic energy + Delta-G solvation = -28987.585723 eV Core-core repulsion = 25336.129295 eV Total energy + Delta-G solvation = -3651.456428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.05475 -40.27284 -37.56228 -37.12582 -36.27385 -33.44373 -33.31260 -31.56450 -30.38739 -29.19076 -28.36067 -26.85157 -25.61971 -25.20730 -24.34964 -23.21383 -21.73890 -20.29504 -19.54117 -18.78917 -17.73933 -17.17319 -17.01269 -16.98272 -16.56707 -16.19349 -15.92678 -15.57792 -15.54371 -15.08673 -14.92169 -14.80314 -14.32002 -13.99536 -13.88272 -13.59235 -13.45130 -13.37747 -13.10255 -12.94951 -12.81225 -12.78018 -12.54246 -12.49631 -12.28283 -12.17201 -12.14464 -12.03558 -11.86350 -11.64352 -11.56327 -11.25967 -11.20393 -10.74044 -10.56332 -10.42532 -9.64988 -8.60084 -7.89156 -5.38605 1.45935 1.50782 1.58304 1.59551 2.05691 2.48789 2.88092 3.26594 3.30015 3.57619 3.74103 3.81791 3.88283 4.02036 4.12984 4.16744 4.21498 4.29765 4.42931 4.45672 4.49485 4.53545 4.60035 4.60669 4.67489 4.69640 4.79702 4.84551 4.88755 4.89965 4.92341 4.99501 5.00248 5.04828 5.10934 5.15426 5.18528 5.24839 5.31394 5.39476 5.50282 5.54378 5.62227 5.66511 6.30014 6.34913 6.43722 7.05521 7.15998 7.71493 8.35021 9.16585 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.006085 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.834826 B = 4600.070844 C = 6149.353554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.077 4.077 4 C -0.156 4.156 5 C -0.150 4.150 6 C 0.520 3.480 7 O -0.580 6.580 8 N -0.598 5.598 9 C 0.113 3.887 10 C -0.112 4.112 11 C 0.083 3.917 12 H 0.047 0.953 13 O -0.386 6.386 14 C 0.050 3.950 15 C 0.144 3.856 16 N -0.596 5.596 17 C -0.262 4.262 18 H 0.062 0.938 19 C -0.029 4.029 20 N -0.920 5.920 21 Si 0.957 3.043 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.128 3.872 26 H 0.067 0.933 27 C 0.100 3.900 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.044 0.956 45 H 0.016 0.984 46 H 0.056 0.944 47 H 0.251 0.749 48 H 0.052 0.948 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -8.886 0.549 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.080 4.080 4 C -0.213 4.213 5 C -0.207 4.207 6 C 0.309 3.691 7 O -0.461 6.461 8 N -0.329 5.329 9 C -0.010 4.010 10 C -0.151 4.151 11 C 0.023 3.977 12 H 0.065 0.935 13 O -0.305 6.305 14 C -0.027 4.027 15 C 0.019 3.981 16 N -0.320 5.320 17 C -0.392 4.392 18 H 0.080 0.920 19 C -0.226 4.226 20 N -0.564 5.564 21 Si 0.785 3.215 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.021 3.979 26 H 0.085 0.915 27 C -0.023 4.023 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.618 -9.373 0.712 10.072 hybrid contribution -0.743 1.238 -0.567 1.551 sum 2.875 -8.135 0.145 8.630 Atomic orbital electron populations 1.21859 0.93743 1.02499 1.02607 1.21300 0.96886 0.92521 1.02148 1.20765 0.89916 0.99023 0.98293 1.22282 1.02835 1.00514 0.95632 1.22148 1.02762 1.00103 0.95653 1.21047 0.90880 0.82682 0.74465 1.90594 1.71121 1.32196 1.52193 1.47828 1.07373 1.06364 1.71371 1.21257 0.79566 1.00832 0.99350 1.21768 1.01720 0.91999 0.99584 1.22273 0.94508 0.94879 0.86001 0.93479 1.87761 1.78679 1.28077 1.35955 1.23161 0.94873 0.82853 1.01837 1.21577 0.91463 0.97168 0.87907 1.44735 1.52399 1.11513 1.23372 1.19268 1.07687 1.23831 0.88406 0.91997 1.25722 0.96974 1.02589 0.97365 1.70132 1.32046 1.38578 1.15609 0.85386 0.77911 0.78709 0.79444 1.19476 1.21848 1.21850 1.21728 0.93019 0.86101 0.97094 0.91470 1.22700 0.97980 0.81903 0.99744 0.91467 0.91964 0.92029 0.92240 0.92362 0.91930 0.90022 0.91976 0.91831 0.90022 0.92200 0.89122 0.91399 0.89830 0.88147 0.87358 0.93759 0.96598 0.92562 0.93938 0.92989 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.23 71.98 0.66 -2.32 16 2 C -0.09 -2.28 4.27 30.60 0.13 -2.15 16 3 C -0.08 -2.19 0.52 -52.93 -0.03 -2.21 16 4 C -0.16 -4.30 7.48 71.98 0.54 -3.76 16 5 C -0.15 -4.23 7.43 71.98 0.53 -3.69 16 6 C 0.52 17.32 6.46 87.66 0.57 17.89 16 7 O -0.58 -21.85 15.28 -3.04 -0.05 -21.89 16 8 N -0.60 -19.56 2.93 -823.12 -2.41 -21.97 16 9 C 0.11 3.34 6.18 86.65 0.54 3.87 16 10 C -0.11 -3.06 5.83 30.48 0.18 -2.89 16 11 C 0.08 2.77 2.74 30.50 0.08 2.86 16 12 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 13 O -0.39 -13.45 9.61 -148.98 -1.43 -14.88 16 14 C 0.05 1.78 6.98 72.06 0.50 2.28 16 15 C 0.14 6.28 5.02 85.92 0.43 6.71 16 16 N -0.60 -27.11 2.75 -666.91 -1.84 -28.95 16 17 C -0.26 -13.20 9.66 84.04 0.81 -12.39 16 18 H 0.06 3.11 7.88 -2.91 -0.02 3.09 16 19 C -0.03 -1.47 4.99 84.86 0.42 -1.05 16 20 N -0.92 -49.72 11.66 21.65 0.25 -49.47 16 21 Si 0.96 41.92 29.58 68.60 2.03 43.95 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 25 C 0.13 4.93 2.76 44.95 0.12 5.05 16 26 H 0.07 2.65 7.71 -2.39 -0.02 2.63 16 27 C 0.10 3.62 3.04 86.43 0.26 3.88 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.19 6.63 -2.39 -0.02 1.17 16 30 H 0.06 1.19 6.67 -2.39 -0.02 1.18 16 31 H 0.06 1.58 8.03 -2.39 -0.02 1.56 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.06 2.00 4.39 -2.39 -0.01 1.99 16 34 H 0.08 2.02 6.82 -2.39 -0.02 2.01 16 35 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 36 H 0.06 1.69 8.11 -2.39 -0.02 1.67 16 37 H 0.08 2.09 6.91 -2.39 -0.02 2.08 16 38 H 0.06 1.98 4.66 -2.39 -0.01 1.97 16 39 H 0.09 2.68 6.89 -2.39 -0.02 2.66 16 40 H 0.07 2.03 7.95 -2.39 -0.02 2.01 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.04 1.54 8.13 -2.39 -0.02 1.53 16 45 H 0.02 0.74 7.15 -2.39 -0.02 0.73 16 46 H 0.06 2.75 6.73 -2.39 -0.02 2.73 16 47 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 48 H 0.05 2.08 6.39 -2.39 -0.02 2.06 16 49 H 0.11 3.95 2.83 -2.39 -0.01 3.95 16 Total: -1.00 -58.42 354.88 3.26 -55.16 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.94 Total: 25.97 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.76 Total: 12.08 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.99 Total: -100.39 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.48 Total: -36.77 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -58.42 3.26 -55.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074325019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.426 kcal (2) G-P(sol) polarization free energy of solvation -58.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds