Wall clock time and date at job start Tue Mar 31 2020 09:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46715 * 2 1 4 4 C 1.52998 * 109.46956 * 185.09464 * 3 2 1 5 5 C 1.50708 * 112.84860 * 304.35758 * 4 3 2 6 6 O 1.21274 * 120.00202 * 114.57535 * 5 4 3 7 7 N 1.34780 * 119.99612 * 294.57865 * 5 4 3 8 8 C 1.46497 * 119.99457 * 184.78148 * 7 5 4 9 9 H 1.08996 * 109.46171 * 324.96655 * 8 7 5 10 10 C 1.53049 * 109.45149 * 84.93945 * 8 7 5 11 11 C 1.53189 * 109.31696 * 58.64050 * 10 8 7 12 12 N 1.46935 * 108.77151 * 54.63623 * 11 10 8 13 13 C 1.36940 * 120.62577 * 126.41094 * 12 11 10 14 14 H 1.07993 * 119.99963 * 211.47070 * 13 12 11 15 15 C 1.38814 * 119.99830 * 31.47908 * 13 12 11 16 16 N 1.31618 * 120.00389 * 10.50197 * 15 13 12 17 17 Si 1.86799 * 119.99763 * 190.50877 * 15 13 12 18 18 H 1.48496 * 109.47555 * 59.99268 * 17 15 13 19 19 H 1.48495 * 109.47368 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46812 * 299.99558 * 17 15 13 21 21 C 1.46914 * 118.73971 * 306.39117 * 12 11 10 22 22 C 1.53045 * 109.45743 * 204.99380 * 8 7 5 23 23 H 1.08999 * 109.49784 * 181.40747 * 22 8 7 24 24 O 1.42897 * 109.52189 * 61.32428 * 22 8 7 25 25 C 1.53776 * 113.61753 * 75.55022 * 4 3 2 26 26 C 1.53959 * 87.01876 * 89.23256 * 25 4 3 27 27 C 1.53776 * 113.61475 * 173.16214 * 4 3 2 28 28 H 1.09003 * 109.46651 * 299.99513 * 1 2 3 29 29 H 1.08994 * 109.47362 * 59.99986 * 1 2 3 30 30 H 1.09001 * 109.46463 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46651 * 240.00487 * 2 1 3 32 32 H 1.08994 * 109.47362 * 120.00014 * 2 1 3 33 33 H 1.08996 * 109.47207 * 65.09232 * 3 2 1 34 34 H 1.09006 * 109.46991 * 305.09249 * 3 2 1 35 35 H 0.96994 * 120.00005 * 4.77103 * 7 5 4 36 36 H 1.09005 * 109.48942 * 298.69265 * 10 8 7 37 37 H 1.08998 * 109.49669 * 178.60224 * 10 8 7 38 38 H 1.08996 * 109.58891 * 294.85627 * 11 10 8 39 39 H 1.08996 * 109.58567 * 174.42034 * 11 10 8 40 40 H 0.96996 * 120.00380 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.58799 * 173.39365 * 21 12 11 42 42 H 1.09001 * 109.59377 * 293.68131 * 21 12 11 43 43 H 0.96698 * 113.99943 * 180.14323 * 24 22 8 44 44 H 1.09002 * 113.61825 * 203.74954 * 25 4 3 45 45 H 1.09000 * 113.61484 * 334.65488 * 25 4 3 46 46 H 1.09001 * 113.53295 * 270.81415 * 26 25 4 47 47 H 1.08998 * 113.74336 * 139.94577 * 26 25 4 48 48 H 1.09001 * 113.61356 * 25.34653 * 27 4 3 49 49 H 1.08998 * 113.61810 * 156.16608 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5646 1.4446 -0.1281 5 6 4.2428 0.6279 0.9417 6 8 4.8591 -0.3725 0.6416 7 7 4.1643 1.0095 2.2320 8 6 4.9090 0.2768 3.2590 9 1 4.9357 -0.7821 3.0021 10 6 6.3381 0.8190 3.3366 11 6 6.2954 2.3150 3.6636 12 7 5.5090 2.5087 4.8896 13 6 6.0303 3.1996 5.9509 14 1 5.7409 2.9405 6.9585 15 6 6.9306 4.2332 5.7313 16 7 7.1269 4.6871 4.5116 17 14 7.8636 4.9798 7.1671 18 1 8.6781 3.9289 7.8284 19 1 8.7560 6.0579 6.6706 20 1 6.8987 5.5459 8.1437 21 6 4.1529 1.9475 4.9552 22 6 4.2196 0.4556 4.6136 23 1 4.7870 -0.0687 5.3826 24 8 2.8958 -0.0788 4.5500 25 6 4.0638 1.1343 -1.5491 26 6 3.9880 2.6480 -1.8196 27 6 4.1661 2.8487 -0.3054 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.7530 1.9294 0.9320 34 1 1.6040 1.9821 -0.8409 35 1 3.6149 1.7692 2.4805 36 1 6.8361 0.6702 2.3784 37 1 6.8855 0.2913 4.1175 38 1 5.8281 2.8558 2.8407 39 1 7.3092 2.6844 3.8176 40 1 7.7562 5.4091 4.3581 41 1 3.7531 2.0744 5.9612 42 1 3.5103 2.4599 4.2392 43 1 2.3987 0.0027 5.3753 44 1 5.0780 0.7358 -1.5784 45 1 3.3605 0.5483 -2.1408 46 1 3.0175 2.9755 -2.1922 47 1 4.8197 3.0303 -2.4115 48 1 3.5452 3.6447 0.1056 49 1 5.2078 2.9202 0.0074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099947421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:24 Heat of formation + Delta-G solvation = -62.974132 kcal Electronic energy + Delta-G solvation = -28141.537488 eV Core-core repulsion = 24490.064277 eV Total energy + Delta-G solvation = -3651.473211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.60778 -38.76633 -37.06736 -35.41011 -34.21296 -33.90760 -31.69980 -30.20655 -28.76190 -28.04810 -25.69093 -25.37229 -24.55194 -22.33553 -21.92228 -21.56709 -20.96925 -18.74974 -18.47260 -17.15552 -16.90480 -16.46716 -15.59476 -15.40435 -14.94371 -14.84765 -14.43895 -14.35483 -14.13578 -13.78245 -13.51549 -13.27022 -12.91692 -12.69047 -12.41579 -12.29342 -12.19148 -11.99521 -11.84771 -11.64947 -11.47533 -11.15843 -11.09689 -11.02927 -10.92463 -10.70695 -10.62443 -10.43370 -10.27204 -10.17040 -10.10422 -9.97509 -9.80208 -9.41695 -9.14797 -8.55974 -8.46889 -6.72405 -5.87335 -3.37368 3.07785 3.32375 3.38522 3.38783 3.62940 4.35911 4.45176 4.51949 4.56170 4.76655 4.83807 5.06040 5.12240 5.19401 5.30012 5.31545 5.38459 5.47842 5.58356 5.60765 5.65052 5.71304 5.73274 5.78863 5.88867 5.89473 5.95678 6.00422 6.02470 6.05995 6.09602 6.18575 6.29107 6.31556 6.35674 6.46226 6.48781 6.57789 6.66433 6.72403 7.04213 7.29839 7.61709 7.69910 7.93220 8.01676 8.37766 8.69642 9.11803 9.71953 10.29212 11.20157 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004337 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.665958 B = 6455.065639 C = 7208.009327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.089 4.089 4 C -0.106 4.106 5 C 0.533 3.467 6 O -0.554 6.554 7 N -0.701 5.701 8 C 0.165 3.835 9 H 0.077 0.923 10 C -0.154 4.154 11 C 0.174 3.826 12 N -0.586 5.586 13 C -0.260 4.260 14 H 0.064 0.936 15 C 0.009 3.991 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.119 3.881 22 C 0.076 3.924 23 H 0.064 0.936 24 O -0.570 6.570 25 C -0.110 4.110 26 C -0.141 4.141 27 C -0.124 4.124 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.089 0.911 40 H 0.256 0.744 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.372 0.628 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 -5.564 -8.569 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.126 4.126 4 C -0.109 4.109 5 C 0.319 3.681 6 O -0.432 6.432 7 N -0.352 5.352 8 C 0.060 3.940 9 H 0.095 0.905 10 C -0.194 4.194 11 C 0.049 3.951 12 N -0.310 5.310 13 C -0.390 4.390 14 H 0.082 0.918 15 C -0.190 4.190 16 N -0.545 5.545 17 Si 0.736 3.264 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.208 1.208 21 C -0.008 4.008 22 C 0.015 3.985 23 H 0.082 0.918 24 O -0.374 6.374 25 C -0.148 4.148 26 C -0.178 4.178 27 C -0.162 4.162 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.236 0.764 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.219 0.781 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.448 -6.255 -9.426 14.739 hybrid contribution 0.153 0.969 1.555 1.839 sum -9.295 -5.286 -7.870 13.277 Atomic orbital electron populations 1.21744 0.95836 1.01465 1.01564 1.21515 0.95606 0.96503 1.02661 1.21361 0.91131 0.97546 1.02607 1.22174 0.96358 0.97183 0.95174 1.20212 0.80065 0.84654 0.83190 1.90631 1.44103 1.26276 1.82208 1.45903 1.48867 1.34081 1.06315 1.20797 0.91372 0.96305 0.85539 0.90524 1.22607 0.94123 1.01658 1.01016 1.20791 0.98529 0.88528 0.87287 1.43941 1.09327 1.62551 1.15210 1.19102 1.23559 1.09906 0.86413 0.91841 1.25162 1.01222 0.96187 0.96457 1.69957 1.37269 1.27969 1.19269 0.86328 0.79667 0.78656 0.81796 1.20905 1.21538 1.20827 1.21535 0.89213 0.90875 0.99199 1.22737 0.82782 0.96353 0.96600 0.91817 1.86488 1.27437 1.83705 1.39781 1.22834 1.02274 0.96128 0.93543 1.22859 1.01928 0.96601 0.96448 1.22942 1.02026 0.94746 0.96449 0.92691 0.92979 0.92918 0.91872 0.91662 0.91263 0.90959 0.76384 0.92127 0.91664 0.95990 0.89249 0.93424 0.92422 0.96032 0.78137 0.89259 0.91235 0.90183 0.91217 0.90670 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.13 -1.47 5.53 -26.72 -0.15 -1.62 16 3 C -0.09 -1.01 4.58 -26.73 -0.12 -1.13 16 4 C -0.11 -1.41 0.80 -154.85 -0.12 -1.53 16 5 C 0.53 9.02 5.59 -10.98 -0.06 8.96 16 6 O -0.55 -11.14 15.78 5.56 0.09 -11.05 16 7 N -0.70 -11.90 4.15 -53.76 -0.22 -12.13 16 8 C 0.16 3.00 2.51 -67.88 -0.17 2.83 16 9 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 10 C -0.15 -3.04 5.77 -26.61 -0.15 -3.19 16 11 C 0.17 4.00 4.99 -3.71 -0.02 3.98 16 12 N -0.59 -13.76 2.99 -172.32 -0.51 -14.27 16 13 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 14 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 15 C 0.01 0.24 5.05 -17.43 -0.09 0.15 16 16 N -0.90 -25.08 11.05 55.49 0.61 -24.46 16 17 Si 0.91 20.98 29.57 -169.99 -5.03 15.95 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.12 2.30 5.84 -3.71 -0.02 2.27 16 22 C 0.08 1.30 3.36 -26.61 -0.09 1.21 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 O -0.57 -8.57 13.21 -35.23 -0.47 -9.04 16 25 C -0.11 -1.37 6.75 -25.83 -0.17 -1.54 16 26 C -0.14 -1.51 7.74 -25.83 -0.20 -1.71 16 27 C -0.12 -1.59 7.22 -25.92 -0.19 -1.78 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.75 7.33 -51.93 -0.38 0.37 16 32 H 0.06 0.93 7.49 -51.93 -0.39 0.54 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.70 7.31 -51.93 -0.38 0.32 16 35 H 0.40 6.65 6.87 -40.82 -0.28 6.37 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.53 7.74 -51.93 -0.40 0.12 16 39 H 0.09 2.34 6.11 -51.93 -0.32 2.02 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.02 0.42 6.65 -51.93 -0.35 0.08 16 43 H 0.37 4.03 9.08 45.56 0.41 4.45 16 44 H 0.09 1.26 7.71 -51.93 -0.40 0.86 16 45 H 0.07 0.78 7.42 -51.93 -0.39 0.40 16 46 H 0.08 0.74 7.61 -51.93 -0.40 0.34 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 49 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -29.98 377.55 -9.01 -38.98 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.83 Total: 11.44 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.33 Total: -1.11 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.12 Total: -50.86 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.38 Total: -20.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.98 -9.01 -38.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099947421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.992 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds