Wall clock time and date at job start Tue Mar 31 2020 09:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46715 * 2 1 4 4 C 1.52998 * 109.46956 * 185.09464 * 3 2 1 5 5 C 1.50708 * 112.84860 * 304.35758 * 4 3 2 6 6 O 1.21274 * 120.00202 * 114.57535 * 5 4 3 7 7 N 1.34780 * 119.99612 * 294.57865 * 5 4 3 8 8 C 1.46497 * 119.99457 * 184.78148 * 7 5 4 9 9 H 1.08996 * 109.46171 * 324.96655 * 8 7 5 10 10 C 1.53049 * 109.45149 * 84.93945 * 8 7 5 11 11 C 1.53189 * 109.31696 * 58.64050 * 10 8 7 12 12 N 1.46935 * 108.77151 * 54.63623 * 11 10 8 13 13 C 1.36940 * 120.62577 * 126.41094 * 12 11 10 14 14 H 1.07993 * 119.99963 * 211.47070 * 13 12 11 15 15 C 1.38814 * 119.99830 * 31.47908 * 13 12 11 16 16 N 1.31618 * 120.00389 * 10.50197 * 15 13 12 17 17 Si 1.86799 * 119.99763 * 190.50877 * 15 13 12 18 18 H 1.48496 * 109.47555 * 59.99268 * 17 15 13 19 19 H 1.48495 * 109.47368 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46812 * 299.99558 * 17 15 13 21 21 C 1.46914 * 118.73971 * 306.39117 * 12 11 10 22 22 C 1.53045 * 109.45743 * 204.99380 * 8 7 5 23 23 H 1.08999 * 109.49784 * 181.40747 * 22 8 7 24 24 O 1.42897 * 109.52189 * 61.32428 * 22 8 7 25 25 C 1.53776 * 113.61753 * 75.55022 * 4 3 2 26 26 C 1.53959 * 87.01876 * 89.23256 * 25 4 3 27 27 C 1.53776 * 113.61475 * 173.16214 * 4 3 2 28 28 H 1.09003 * 109.46651 * 299.99513 * 1 2 3 29 29 H 1.08994 * 109.47362 * 59.99986 * 1 2 3 30 30 H 1.09001 * 109.46463 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46651 * 240.00487 * 2 1 3 32 32 H 1.08994 * 109.47362 * 120.00014 * 2 1 3 33 33 H 1.08996 * 109.47207 * 65.09232 * 3 2 1 34 34 H 1.09006 * 109.46991 * 305.09249 * 3 2 1 35 35 H 0.96994 * 120.00005 * 4.77103 * 7 5 4 36 36 H 1.09005 * 109.48942 * 298.69265 * 10 8 7 37 37 H 1.08998 * 109.49669 * 178.60224 * 10 8 7 38 38 H 1.08996 * 109.58891 * 294.85627 * 11 10 8 39 39 H 1.08996 * 109.58567 * 174.42034 * 11 10 8 40 40 H 0.96996 * 120.00380 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.58799 * 173.39365 * 21 12 11 42 42 H 1.09001 * 109.59377 * 293.68131 * 21 12 11 43 43 H 0.96698 * 113.99943 * 180.14323 * 24 22 8 44 44 H 1.09002 * 113.61825 * 203.74954 * 25 4 3 45 45 H 1.09000 * 113.61484 * 334.65488 * 25 4 3 46 46 H 1.09001 * 113.53295 * 270.81415 * 26 25 4 47 47 H 1.08998 * 113.74336 * 139.94577 * 26 25 4 48 48 H 1.09001 * 113.61356 * 25.34653 * 27 4 3 49 49 H 1.08998 * 113.61810 * 156.16608 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5646 1.4446 -0.1281 5 6 4.2428 0.6279 0.9417 6 8 4.8591 -0.3725 0.6416 7 7 4.1643 1.0095 2.2320 8 6 4.9090 0.2768 3.2590 9 1 4.9357 -0.7821 3.0021 10 6 6.3381 0.8190 3.3366 11 6 6.2954 2.3150 3.6636 12 7 5.5090 2.5087 4.8896 13 6 6.0303 3.1996 5.9509 14 1 5.7409 2.9405 6.9585 15 6 6.9306 4.2332 5.7313 16 7 7.1269 4.6871 4.5116 17 14 7.8636 4.9798 7.1671 18 1 8.6781 3.9289 7.8284 19 1 8.7560 6.0579 6.6706 20 1 6.8987 5.5459 8.1437 21 6 4.1529 1.9475 4.9552 22 6 4.2196 0.4556 4.6136 23 1 4.7870 -0.0687 5.3826 24 8 2.8958 -0.0788 4.5500 25 6 4.0638 1.1343 -1.5491 26 6 3.9880 2.6480 -1.8196 27 6 4.1661 2.8487 -0.3054 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.7530 1.9294 0.9320 34 1 1.6040 1.9821 -0.8409 35 1 3.6149 1.7692 2.4805 36 1 6.8361 0.6702 2.3784 37 1 6.8855 0.2913 4.1175 38 1 5.8281 2.8558 2.8407 39 1 7.3092 2.6844 3.8176 40 1 7.7562 5.4091 4.3581 41 1 3.7531 2.0744 5.9612 42 1 3.5103 2.4599 4.2392 43 1 2.3987 0.0027 5.3753 44 1 5.0780 0.7358 -1.5784 45 1 3.3605 0.5483 -2.1408 46 1 3.0175 2.9755 -2.1922 47 1 4.8197 3.0303 -2.4115 48 1 3.5452 3.6447 0.1056 49 1 5.2078 2.9202 0.0074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099947421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:23 Heat of formation + Delta-G solvation = -82.562173 kcal Electronic energy + Delta-G solvation = -28142.386889 eV Core-core repulsion = 24490.064277 eV Total energy + Delta-G solvation = -3652.322612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84733 -40.15944 -38.42383 -36.94101 -35.57801 -35.03898 -33.48850 -31.88254 -30.28929 -29.10539 -27.26059 -26.59704 -25.68391 -23.95336 -23.59584 -22.63494 -22.13381 -20.30195 -19.71840 -18.80343 -18.10806 -17.94725 -17.00306 -16.81717 -16.49650 -16.03036 -15.87374 -15.72513 -15.53989 -15.31332 -14.87790 -14.43205 -14.37071 -14.04610 -13.80626 -13.54919 -13.32228 -13.29854 -13.19096 -12.97315 -12.80122 -12.74719 -12.38971 -12.36105 -12.25447 -12.11769 -11.97417 -11.92768 -11.84393 -11.61864 -11.31302 -11.23781 -11.07558 -11.01600 -10.54680 -10.45315 -9.96278 -8.64978 -7.87933 -5.40251 1.48294 1.50287 1.56287 1.72942 2.29165 2.49283 3.14596 3.29226 3.43334 3.51855 3.66545 3.76106 3.87642 3.89539 4.02477 4.06346 4.18909 4.23866 4.29735 4.37112 4.43971 4.52495 4.68225 4.74215 4.76592 4.80431 4.85850 4.87105 4.89673 4.93421 5.00498 5.04589 5.07622 5.09963 5.13420 5.22417 5.27001 5.37566 5.41518 5.47461 5.52146 5.58830 5.63526 5.71232 6.38051 6.63465 6.87769 7.13495 7.32457 7.80275 8.33309 9.17383 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004337 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.665958 B = 6455.065639 C = 7208.009327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.105 4.105 5 C 0.528 3.472 6 O -0.590 6.590 7 N -0.698 5.698 8 C 0.167 3.833 9 H 0.068 0.932 10 C -0.141 4.141 11 C 0.189 3.811 12 N -0.600 5.600 13 C -0.268 4.268 14 H 0.070 0.930 15 C -0.042 4.042 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.274 1.274 21 C 0.121 3.879 22 C 0.096 3.904 23 H 0.067 0.933 24 O -0.569 6.569 25 C -0.113 4.113 26 C -0.122 4.122 27 C -0.129 4.129 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.403 0.597 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.006 0.994 39 H 0.053 0.947 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.394 0.606 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.345 -5.443 -8.660 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.121 4.121 4 C -0.108 4.108 5 C 0.316 3.684 6 O -0.471 6.471 7 N -0.348 5.348 8 C 0.061 3.939 9 H 0.086 0.914 10 C -0.181 4.181 11 C 0.063 3.937 12 N -0.325 5.325 13 C -0.398 4.398 14 H 0.087 0.913 15 C -0.238 4.238 16 N -0.576 5.576 17 Si 0.795 3.205 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.199 1.199 21 C -0.006 4.006 22 C 0.035 3.965 23 H 0.085 0.915 24 O -0.377 6.377 25 C -0.151 4.151 26 C -0.159 4.159 27 C -0.167 4.167 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.244 0.756 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.126 0.874 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.636 -6.145 -9.489 16.223 hybrid contribution 0.788 0.874 1.600 1.986 sum -10.848 -5.271 -7.889 14.412 Atomic orbital electron populations 1.21710 0.93967 1.01970 1.02485 1.21467 0.97186 0.96335 1.01008 1.21391 0.89220 0.97623 1.03838 1.22318 0.97635 0.96664 0.94162 1.20945 0.79451 0.84379 0.83638 1.90605 1.45739 1.28053 1.82693 1.45880 1.48599 1.33933 1.06362 1.20655 0.90670 0.95728 0.86826 0.91411 1.22408 0.95629 0.99495 1.00550 1.20448 0.96361 0.89983 0.86860 1.44093 1.11133 1.62693 1.14590 1.19456 1.23377 1.09590 0.87357 0.91257 1.25868 1.02422 0.97002 0.98531 1.70118 1.37971 1.28495 1.21040 0.85361 0.78382 0.77590 0.79165 1.20530 1.22278 1.19927 1.21650 0.87030 0.91902 0.99979 1.22327 0.83871 0.94768 0.95522 0.91548 1.86462 1.26409 1.83174 1.41610 1.22827 1.01278 0.97765 0.93187 1.22840 1.03691 0.94751 0.94657 1.22931 1.00494 0.94676 0.98579 0.92577 0.91196 0.92708 0.92166 0.94725 0.91213 0.88181 0.76048 0.92874 0.91484 0.97628 0.92816 0.94099 0.91319 0.95771 0.75583 0.91669 0.89705 0.87380 0.90598 0.89705 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 71.98 0.71 -1.71 16 2 C -0.12 -2.68 5.53 30.60 0.17 -2.52 16 3 C -0.08 -1.71 4.58 30.60 0.14 -1.57 16 4 C -0.10 -2.71 0.80 -52.40 -0.04 -2.76 16 5 C 0.53 18.14 5.59 87.66 0.49 18.63 16 6 O -0.59 -24.42 15.78 -3.01 -0.05 -24.47 16 7 N -0.70 -23.83 4.15 -442.39 -1.84 -25.67 16 8 C 0.17 6.08 2.51 45.02 0.11 6.19 16 9 H 0.07 2.64 7.51 -2.39 -0.02 2.62 16 10 C -0.14 -5.70 5.77 30.67 0.18 -5.52 16 11 C 0.19 8.96 4.99 86.36 0.43 9.39 16 12 N -0.60 -28.24 2.99 -699.10 -2.09 -30.33 16 13 C -0.27 -13.92 9.58 84.03 0.81 -13.11 16 14 H 0.07 3.46 7.85 -2.91 -0.02 3.44 16 15 C -0.04 -2.25 5.05 84.86 0.43 -1.83 16 16 N -0.93 -53.07 11.05 21.65 0.24 -52.83 16 17 Si 0.97 43.29 29.57 68.60 2.03 45.32 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 C 0.12 4.51 5.84 86.37 0.50 5.01 16 22 C 0.10 3.16 3.36 30.68 0.10 3.26 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 O -0.57 -15.86 13.21 -148.98 -1.97 -17.83 16 25 C -0.11 -2.69 6.75 31.18 0.21 -2.48 16 26 C -0.12 -2.35 7.74 31.18 0.24 -2.11 16 27 C -0.13 -3.23 7.22 31.12 0.22 -3.00 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.34 7.33 -2.39 -0.02 1.33 16 32 H 0.03 0.96 7.49 -2.39 -0.02 0.94 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.54 7.31 -2.38 -0.02 1.53 16 35 H 0.40 13.29 6.87 -92.71 -0.64 12.65 16 36 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.01 0.28 7.74 -2.39 -0.02 0.26 16 39 H 0.05 2.93 6.11 -2.39 -0.01 2.92 16 40 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 41 H 0.07 2.41 7.93 -2.38 -0.02 2.39 16 42 H 0.02 0.91 6.65 -2.39 -0.02 0.90 16 43 H 0.39 7.33 9.08 -74.06 -0.67 6.66 16 44 H 0.06 1.87 7.71 -2.39 -0.02 1.85 16 45 H 0.08 1.75 7.42 -2.39 -0.02 1.73 16 46 H 0.11 1.53 7.61 -2.39 -0.02 1.51 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 49 H 0.06 1.85 8.09 -2.39 -0.02 1.84 16 Total: -1.00 -65.79 377.55 0.67 -65.12 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.37 Total: 34.81 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.71 Total: 5.87 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -3.68 Total: -108.83 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.02 Total: -42.29 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.79 0.67 -65.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099947421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.442 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds