Wall clock time and date at job start Tue Mar 31 2020 10:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50706 * 120.00158 * 2 1 4 4 C 1.30999 * 120.00699 * 179.97438 * 2 1 3 5 5 C 1.50697 * 120.00569 * 174.25442 * 4 2 1 6 6 C 1.50709 * 119.99212 * 354.25852 * 4 2 1 7 7 C 1.50697 * 109.47169 * 94.99972 * 6 4 2 8 8 O 1.21283 * 120.00131 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99793 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99764 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.55551 * 60.13259 * 11 10 9 13 13 C 1.53302 * 109.50974 * 180.25552 * 11 10 9 14 14 N 1.47236 * 108.40336 * 172.23105 * 13 11 10 15 15 C 1.36932 * 121.02859 * 129.46482 * 14 13 11 16 16 H 1.07996 * 119.99936 * 332.89104 * 15 14 13 17 17 C 1.38816 * 119.99652 * 152.89225 * 15 14 13 18 18 N 1.31620 * 119.99888 * 157.41987 * 17 15 14 19 19 Si 1.86799 * 120.00252 * 337.41957 * 17 15 14 20 20 H 1.48507 * 109.46798 * 92.85665 * 19 17 15 21 21 H 1.48494 * 109.46995 * 212.85521 * 19 17 15 22 22 H 1.48503 * 109.46843 * 332.85814 * 19 17 15 23 23 C 1.47151 * 117.98322 * 309.48392 * 14 13 11 24 24 C 1.53294 * 108.41649 * 50.52574 * 23 14 13 25 25 O 1.42958 * 109.22042 * 307.67222 * 24 23 14 26 26 H 1.09001 * 109.46905 * 269.99955 * 1 2 3 27 27 H 1.09001 * 109.47170 * 30.00406 * 1 2 3 28 28 H 1.08997 * 109.46636 * 150.00214 * 1 2 3 29 29 H 1.09001 * 109.46944 * 264.79944 * 3 2 1 30 30 H 1.09005 * 109.46580 * 24.79107 * 3 2 1 31 31 H 1.08996 * 109.47467 * 144.79468 * 3 2 1 32 32 H 1.09004 * 109.47054 * 181.88656 * 5 4 2 33 33 H 1.08998 * 109.47232 * 301.88466 * 5 4 2 34 34 H 1.08998 * 109.47123 * 61.88709 * 5 4 2 35 35 H 1.08995 * 109.47150 * 334.99438 * 6 4 2 36 36 H 1.09008 * 109.46471 * 214.99489 * 6 4 2 37 37 H 0.97000 * 120.00099 * 0.02562 * 9 7 6 38 38 H 1.09005 * 109.46684 * 60.00579 * 10 9 7 39 39 H 1.08993 * 109.47623 * 300.00308 * 10 9 7 40 40 H 1.09002 * 109.46979 * 299.87043 * 12 11 10 41 41 H 1.08996 * 109.47245 * 59.87082 * 12 11 10 42 42 H 1.09006 * 109.47068 * 179.87196 * 12 11 10 43 43 H 1.08998 * 109.68432 * 291.94682 * 13 11 10 44 44 H 1.08996 * 109.67927 * 52.50632 * 13 11 10 45 45 H 0.97001 * 120.00190 * 179.97438 * 18 17 15 46 46 H 1.08992 * 109.68316 * 290.77634 * 23 14 13 47 47 H 1.09005 * 109.67637 * 170.26128 * 23 14 13 48 48 H 1.08998 * 109.51572 * 67.60017 * 24 23 14 49 49 H 1.09006 * 109.50908 * 187.70265 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 3.6634 -1.1377 -0.1301 6 6 1.4142 -2.4362 0.1317 7 6 1.1493 -3.0037 -1.2390 8 8 1.5298 -2.4093 -2.2254 9 7 0.4894 -4.1717 -1.3688 10 6 0.2314 -4.7230 -2.7013 11 6 -0.5278 -6.0447 -2.5681 12 6 -1.8591 -5.8009 -1.8546 13 6 -0.7927 -6.6257 -3.9618 14 7 -1.3530 -7.9780 -3.8028 15 6 -2.4992 -8.3482 -4.4541 16 1 -3.2325 -7.6022 -4.7228 17 6 -2.7186 -9.6822 -4.7689 18 7 -3.9439 -10.1172 -4.9734 19 14 -1.2749 -10.8601 -4.9023 20 1 -1.0564 -11.5255 -3.5927 21 1 -1.5666 -11.8855 -5.9359 22 1 -0.0542 -10.1055 -5.2840 23 6 -0.6440 -8.9200 -2.9223 24 6 -0.3864 -8.2272 -1.5793 25 8 0.2560 -6.9717 -1.8130 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 2.5229 1.5732 -1.0235 30 1 1.6342 2.0863 0.4309 31 1 3.1694 1.2000 0.5924 32 1 4.0247 -2.1660 -0.1434 33 1 3.9485 -0.6405 -1.0572 34 1 4.1029 -0.6091 0.7157 35 1 0.4671 -2.2613 0.6418 36 1 2.0123 -3.1423 0.7078 37 1 0.1848 -4.6469 -0.5799 38 1 1.1785 -4.8975 -3.2120 39 1 -0.3671 -4.0171 -3.2770 40 1 -1.6698 -5.3920 -0.8620 41 1 -2.4561 -5.0942 -2.4309 42 1 -2.3997 -6.7429 -1.7624 43 1 -1.5042 -5.9941 -4.4937 44 1 0.1414 -6.6789 -4.5209 45 1 -4.0972 -11.0494 -5.1938 46 1 0.3049 -9.2041 -3.3768 47 1 -1.2566 -9.8080 -2.7657 48 1 -1.3343 -8.0615 -1.0673 49 1 0.2555 -8.8562 -0.9624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108129700.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:09 Heat of formation + Delta-G solvation = -50.662271 kcal Electronic energy + Delta-G solvation = -26797.807645 eV Core-core repulsion = 23146.868316 eV Total energy + Delta-G solvation = -3650.939329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -40.08541 -39.16238 -37.22735 -35.14123 -34.42958 -32.27947 -31.51873 -31.10882 -29.72903 -28.42320 -27.21688 -26.43481 -25.56080 -23.88389 -23.17400 -21.61464 -20.44845 -19.06515 -17.49775 -17.04926 -16.88237 -16.23641 -15.82578 -15.59623 -15.45507 -14.70900 -14.52350 -14.44774 -14.29870 -14.00875 -13.85712 -13.78848 -13.26116 -12.93117 -12.84442 -12.49512 -12.46350 -12.36874 -12.31588 -12.13990 -11.94102 -11.80070 -11.62229 -11.46074 -11.42694 -11.04010 -10.92894 -10.82554 -10.43384 -10.34749 -9.91091 -9.70073 -9.59468 -9.42705 -8.95724 -8.63454 -8.57039 -7.05469 -6.04383 -3.40066 1.92435 2.70527 3.25667 3.32937 3.44001 3.48182 4.01693 4.45743 4.49552 4.71875 4.72582 4.88503 4.92361 5.12521 5.14346 5.21334 5.24283 5.26552 5.32373 5.36094 5.37615 5.45363 5.52262 5.67212 5.71793 5.73982 5.75586 5.76230 5.80762 5.81777 5.87618 5.92184 5.96602 6.06640 6.21279 6.21648 6.45087 6.46632 6.47624 6.52344 6.55413 6.71687 6.83423 7.57690 7.60185 7.81413 8.22224 8.29754 8.80853 9.61394 9.98281 11.11064 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.002746 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.816943 B =10192.648072 C =10446.597518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.130 4.130 3 C -0.114 4.114 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.106 4.106 7 C 0.511 3.489 8 O -0.538 6.538 9 N -0.721 5.721 10 C 0.139 3.861 11 C 0.087 3.913 12 C -0.166 4.166 13 C 0.130 3.870 14 N -0.603 5.603 15 C -0.262 4.262 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.903 5.903 19 Si 0.878 3.122 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.271 1.271 23 C 0.092 3.908 24 C 0.046 3.954 25 O -0.380 6.380 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.264 0.736 46 H 0.032 0.968 47 H 0.080 0.920 48 H 0.056 0.944 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.445 16.585 13.818 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.130 4.130 3 C -0.170 4.170 4 C -0.115 4.115 5 C -0.164 4.164 6 C -0.146 4.146 7 C 0.297 3.703 8 O -0.415 6.415 9 N -0.373 5.373 10 C 0.015 3.985 11 C 0.046 3.954 12 C -0.224 4.224 13 C 0.003 3.997 14 N -0.327 5.327 15 C -0.389 4.389 16 H 0.105 0.895 17 C -0.173 4.173 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.216 1.216 21 H -0.229 1.229 22 H -0.196 1.196 23 C -0.033 4.033 24 C -0.032 4.032 25 O -0.299 6.299 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.238 0.762 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.098 0.902 48 H 0.074 0.926 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.758 16.908 13.077 23.930 hybrid contribution 0.278 -1.338 0.077 1.369 sum 11.036 15.570 13.153 23.178 Atomic orbital electron populations 1.20836 0.92456 1.02591 1.01505 1.21349 0.95514 0.94626 1.01521 1.20787 0.99587 0.94669 1.01981 1.20794 0.95573 0.92655 1.02458 1.20716 0.92024 1.02187 1.01505 1.20801 1.02059 0.96422 0.95329 1.20572 0.77672 0.80636 0.91371 1.90701 1.50984 1.59770 1.40001 1.45978 1.58482 1.23069 1.09789 1.21316 1.00434 0.92437 0.84327 1.22226 0.90662 0.88111 0.94402 1.22252 0.97258 1.03541 0.99337 1.21491 0.97860 0.87816 0.92521 1.44325 1.28324 1.08866 1.51231 1.18863 0.93384 0.93792 1.32897 0.89507 1.25259 0.96090 0.97087 0.98861 1.69852 1.18892 1.15669 1.50119 0.87002 0.84421 0.80857 0.76890 1.21553 1.22918 1.19594 1.21968 0.96548 0.94348 0.90470 1.23091 0.97544 0.84798 0.97802 1.87838 1.43185 1.24892 1.74018 0.91733 0.91855 0.91946 0.91531 0.92208 0.91798 0.92383 0.91477 0.91908 0.88399 0.88412 0.76226 0.90949 0.90196 0.93362 0.91808 0.90222 0.90852 0.94900 0.92652 0.95023 0.90153 0.92568 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.98 36.00 0.32 -0.71 16 2 C -0.13 -1.25 6.04 -101.06 -0.61 -1.86 16 3 C -0.11 -0.90 9.37 36.01 0.34 -0.56 16 4 C -0.11 -1.16 4.54 -101.06 -0.46 -1.62 16 5 C -0.11 -1.00 8.91 36.00 0.32 -0.67 16 6 C -0.11 -1.01 5.08 -29.03 -0.15 -1.16 16 7 C 0.51 6.59 7.36 -10.99 -0.08 6.51 16 8 O -0.54 -8.98 16.03 5.55 0.09 -8.89 16 9 N -0.72 -8.88 5.15 -60.29 -0.31 -9.19 16 10 C 0.14 1.99 4.82 -4.04 -0.02 1.97 16 11 C 0.09 1.39 0.76 -90.46 -0.07 1.32 16 12 C -0.17 -2.49 7.92 37.16 0.29 -2.19 16 13 C 0.13 2.50 5.41 -3.48 -0.02 2.48 16 14 N -0.60 -13.83 2.33 -171.76 -0.40 -14.23 16 15 C -0.26 -7.04 10.07 -15.06 -0.15 -7.20 16 16 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.03 0.75 5.19 -17.43 -0.09 0.66 16 18 N -0.90 -26.97 13.97 55.49 0.78 -26.20 16 19 Si 0.88 21.92 24.38 -169.99 -4.14 17.78 16 20 H -0.29 -6.87 6.65 56.52 0.38 -6.49 16 21 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 22 H -0.27 -6.77 6.75 56.52 0.38 -6.39 16 23 C 0.09 1.95 4.42 -3.53 -0.02 1.94 16 24 C 0.05 0.78 6.60 37.31 0.25 1.02 16 25 O -0.38 -6.36 9.97 -35.23 -0.35 -6.71 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.06 0.62 6.37 -51.93 -0.33 0.29 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.06 0.44 6.76 -51.93 -0.35 0.09 16 32 H 0.06 0.54 8.00 -51.93 -0.42 0.12 16 33 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.06 0.46 7.32 -51.93 -0.38 0.08 16 35 H 0.10 0.77 6.54 -51.93 -0.34 0.43 16 36 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.40 4.30 7.21 -40.82 -0.29 4.00 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.60 6.88 -51.93 -0.36 0.24 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.40 6.11 -51.93 -0.32 1.09 16 43 H 0.07 1.38 7.96 -51.93 -0.41 0.97 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 47 H 0.08 1.83 4.93 -51.93 -0.26 1.57 16 48 H 0.06 0.94 6.25 -51.93 -0.32 0.62 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -31.96 374.95 -7.22 -39.19 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.39 Total: 2.68 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.14 Total: -0.07 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.06 Total: -49.62 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.26 Total: -15.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.96 -7.22 -39.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108129700.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.477 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds