Wall clock time and date at job start Tue Mar 31 2020 10:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50706 * 120.00158 * 2 1 4 4 C 1.30999 * 120.00699 * 179.97438 * 2 1 3 5 5 C 1.50697 * 120.00569 * 174.25442 * 4 2 1 6 6 C 1.50709 * 119.99212 * 354.25852 * 4 2 1 7 7 C 1.50697 * 109.47169 * 94.99972 * 6 4 2 8 8 O 1.21283 * 120.00131 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99793 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99764 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.55551 * 60.13259 * 11 10 9 13 13 C 1.53302 * 109.50974 * 180.25552 * 11 10 9 14 14 N 1.47236 * 108.40336 * 172.23105 * 13 11 10 15 15 C 1.36932 * 121.02859 * 129.46482 * 14 13 11 16 16 H 1.07996 * 119.99936 * 332.89104 * 15 14 13 17 17 C 1.38816 * 119.99652 * 152.89225 * 15 14 13 18 18 N 1.31620 * 119.99888 * 157.41987 * 17 15 14 19 19 Si 1.86799 * 120.00252 * 337.41957 * 17 15 14 20 20 H 1.48507 * 109.46798 * 92.85665 * 19 17 15 21 21 H 1.48494 * 109.46995 * 212.85521 * 19 17 15 22 22 H 1.48503 * 109.46843 * 332.85814 * 19 17 15 23 23 C 1.47151 * 117.98322 * 309.48392 * 14 13 11 24 24 C 1.53294 * 108.41649 * 50.52574 * 23 14 13 25 25 O 1.42958 * 109.22042 * 307.67222 * 24 23 14 26 26 H 1.09001 * 109.46905 * 269.99955 * 1 2 3 27 27 H 1.09001 * 109.47170 * 30.00406 * 1 2 3 28 28 H 1.08997 * 109.46636 * 150.00214 * 1 2 3 29 29 H 1.09001 * 109.46944 * 264.79944 * 3 2 1 30 30 H 1.09005 * 109.46580 * 24.79107 * 3 2 1 31 31 H 1.08996 * 109.47467 * 144.79468 * 3 2 1 32 32 H 1.09004 * 109.47054 * 181.88656 * 5 4 2 33 33 H 1.08998 * 109.47232 * 301.88466 * 5 4 2 34 34 H 1.08998 * 109.47123 * 61.88709 * 5 4 2 35 35 H 1.08995 * 109.47150 * 334.99438 * 6 4 2 36 36 H 1.09008 * 109.46471 * 214.99489 * 6 4 2 37 37 H 0.97000 * 120.00099 * 0.02562 * 9 7 6 38 38 H 1.09005 * 109.46684 * 60.00579 * 10 9 7 39 39 H 1.08993 * 109.47623 * 300.00308 * 10 9 7 40 40 H 1.09002 * 109.46979 * 299.87043 * 12 11 10 41 41 H 1.08996 * 109.47245 * 59.87082 * 12 11 10 42 42 H 1.09006 * 109.47068 * 179.87196 * 12 11 10 43 43 H 1.08998 * 109.68432 * 291.94682 * 13 11 10 44 44 H 1.08996 * 109.67927 * 52.50632 * 13 11 10 45 45 H 0.97001 * 120.00190 * 179.97438 * 18 17 15 46 46 H 1.08992 * 109.68316 * 290.77634 * 23 14 13 47 47 H 1.09005 * 109.67637 * 170.26128 * 23 14 13 48 48 H 1.08998 * 109.51572 * 67.60017 * 24 23 14 49 49 H 1.09006 * 109.50908 * 187.70265 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 3.6634 -1.1377 -0.1301 6 6 1.4142 -2.4362 0.1317 7 6 1.1493 -3.0037 -1.2390 8 8 1.5298 -2.4093 -2.2254 9 7 0.4894 -4.1717 -1.3688 10 6 0.2314 -4.7230 -2.7013 11 6 -0.5278 -6.0447 -2.5681 12 6 -1.8591 -5.8009 -1.8546 13 6 -0.7927 -6.6257 -3.9618 14 7 -1.3530 -7.9780 -3.8028 15 6 -2.4992 -8.3482 -4.4541 16 1 -3.2325 -7.6022 -4.7228 17 6 -2.7186 -9.6822 -4.7689 18 7 -3.9439 -10.1172 -4.9734 19 14 -1.2749 -10.8601 -4.9023 20 1 -1.0564 -11.5255 -3.5927 21 1 -1.5666 -11.8855 -5.9359 22 1 -0.0542 -10.1055 -5.2840 23 6 -0.6440 -8.9200 -2.9223 24 6 -0.3864 -8.2272 -1.5793 25 8 0.2560 -6.9717 -1.8130 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 2.5229 1.5732 -1.0235 30 1 1.6342 2.0863 0.4309 31 1 3.1694 1.2000 0.5924 32 1 4.0247 -2.1660 -0.1434 33 1 3.9485 -0.6405 -1.0572 34 1 4.1029 -0.6091 0.7157 35 1 0.4671 -2.2613 0.6418 36 1 2.0123 -3.1423 0.7078 37 1 0.1848 -4.6469 -0.5799 38 1 1.1785 -4.8975 -3.2120 39 1 -0.3671 -4.0171 -3.2770 40 1 -1.6698 -5.3920 -0.8620 41 1 -2.4561 -5.0942 -2.4309 42 1 -2.3997 -6.7429 -1.7624 43 1 -1.5042 -5.9941 -4.4937 44 1 0.1414 -6.6789 -4.5209 45 1 -4.0972 -11.0494 -5.1938 46 1 0.3049 -9.2041 -3.3768 47 1 -1.2566 -9.8080 -2.7657 48 1 -1.3343 -8.0615 -1.0673 49 1 0.2555 -8.8562 -0.9624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108129700.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:07 Heat of formation + Delta-G solvation = -71.917723 kcal Electronic energy + Delta-G solvation = -26798.729350 eV Core-core repulsion = 23146.868316 eV Total energy + Delta-G solvation = -3651.861034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.24992 -40.41118 -38.02469 -36.70329 -35.82098 -33.78596 -33.25727 -31.90976 -30.48471 -29.91845 -28.19842 -27.90025 -26.72145 -24.81343 -24.66853 -23.21892 -21.49566 -20.51656 -18.99534 -18.34573 -17.89615 -17.42369 -17.29216 -16.77402 -16.58468 -16.00473 -15.87920 -15.61983 -15.48393 -15.36710 -15.10476 -14.93478 -14.43007 -14.19384 -14.08931 -13.80290 -13.58860 -13.48835 -13.24263 -13.12729 -12.98908 -12.95640 -12.80761 -12.63876 -12.59816 -12.34885 -12.19461 -12.13016 -12.10169 -11.60741 -11.60229 -11.28138 -11.08093 -10.92167 -10.48745 -10.04746 -9.32476 -8.95188 -8.21009 -5.52433 1.19250 1.26058 1.39715 1.48056 1.72118 2.31429 2.37686 2.68880 2.99235 3.21680 3.77894 3.80772 3.88222 3.96819 4.02684 4.13723 4.24630 4.25877 4.29791 4.44619 4.48079 4.56017 4.60866 4.66234 4.67329 4.68777 4.72434 4.76529 4.81851 4.85040 4.89193 4.93811 5.01594 5.04440 5.05374 5.06447 5.13647 5.16990 5.23521 5.36982 5.44341 5.78215 5.79739 6.07796 6.13931 6.23059 6.62208 6.81404 7.32164 7.53686 7.95220 8.98289 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.002746 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.816943 B =10192.648072 C =10446.597518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C -0.114 4.114 4 C -0.135 4.135 5 C -0.106 4.106 6 C -0.100 4.100 7 C 0.512 3.488 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.148 3.852 11 C 0.099 3.901 12 C -0.160 4.160 13 C 0.123 3.877 14 N -0.615 5.615 15 C -0.246 4.246 16 H 0.057 0.943 17 C -0.028 4.028 18 N -0.950 5.950 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.310 1.310 22 H -0.272 1.272 23 C 0.084 3.916 24 C 0.055 3.945 25 O -0.376 6.376 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.414 0.586 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.263 0.737 46 H 0.030 0.970 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.021 17.432 16.382 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C -0.171 4.171 4 C -0.135 4.135 5 C -0.163 4.163 6 C -0.139 4.139 7 C 0.300 3.700 8 O -0.460 6.460 9 N -0.365 5.365 10 C 0.023 3.977 11 C 0.058 3.942 12 C -0.217 4.217 13 C -0.003 4.003 14 N -0.340 5.340 15 C -0.375 4.375 16 H 0.075 0.925 17 C -0.224 4.224 18 N -0.595 5.595 19 Si 0.768 3.232 20 H -0.195 1.195 21 H -0.239 1.239 22 H -0.197 1.197 23 C -0.041 4.041 24 C -0.023 4.023 25 O -0.295 6.295 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.365 17.765 15.693 26.735 hybrid contribution -0.229 -1.483 -0.743 1.674 sum 12.137 16.282 14.950 25.218 Atomic orbital electron populations 1.20860 0.92040 1.02057 1.02505 1.21651 0.96107 0.95239 1.00670 1.20819 1.00114 0.94312 1.01842 1.20995 0.96051 0.93126 1.03344 1.20706 0.91903 1.02117 1.01569 1.20842 1.03407 0.96438 0.93238 1.21186 0.76518 0.80066 0.92271 1.90688 1.52671 1.60877 1.41731 1.45876 1.58300 1.23067 1.09249 1.21066 0.99519 0.91556 0.85519 1.22044 0.91524 0.88402 0.92216 1.22177 0.96148 1.02362 1.01004 1.21666 0.97369 0.86223 0.95030 1.44402 1.27640 1.10456 1.51531 1.18789 0.93938 0.93047 1.31751 0.92492 1.25813 0.97979 0.98844 0.99723 1.69964 1.20768 1.16044 1.52737 0.86020 0.81172 0.78739 0.77310 1.19454 1.23907 1.19661 1.22076 0.95581 0.94046 0.92391 1.23050 0.98847 0.84878 0.95522 1.87858 1.43283 1.24731 1.73669 0.89902 0.91693 0.93180 0.92210 0.91031 0.90863 0.92627 0.92861 0.90123 0.86393 0.86315 0.74903 0.92184 0.90125 0.90211 0.91669 0.92839 0.91162 0.95087 0.92830 0.95220 0.91806 0.92076 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 8.98 71.23 0.64 -1.20 16 2 C -0.14 -2.37 6.04 -16.49 -0.10 -2.47 16 3 C -0.11 -1.61 9.37 71.24 0.67 -0.94 16 4 C -0.13 -2.46 4.54 -16.49 -0.07 -2.54 16 5 C -0.11 -1.80 8.91 71.23 0.63 -1.17 16 6 C -0.10 -1.62 5.08 29.10 0.15 -1.47 16 7 C 0.51 12.17 7.36 87.66 0.65 12.81 16 8 O -0.58 -18.88 16.03 -3.04 -0.05 -18.92 16 9 N -0.71 -15.73 5.15 -463.06 -2.39 -18.12 16 10 C 0.15 4.01 4.82 86.38 0.42 4.42 16 11 C 0.10 2.98 0.76 -10.69 -0.01 2.97 16 12 C -0.16 -4.45 7.92 71.98 0.57 -3.88 16 13 C 0.12 4.68 5.41 86.34 0.47 5.15 16 14 N -0.62 -28.05 2.33 -697.33 -1.62 -29.67 16 15 C -0.25 -13.51 10.07 84.04 0.85 -12.67 16 16 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 17 C -0.03 -1.60 5.19 84.86 0.44 -1.16 16 18 N -0.95 -58.23 13.97 21.65 0.30 -57.93 16 19 Si 0.94 45.74 24.38 68.60 1.67 47.41 16 20 H -0.27 -12.09 6.65 99.48 0.66 -11.43 16 21 H -0.31 -15.47 7.11 99.48 0.71 -14.77 16 22 H -0.27 -13.09 6.75 99.48 0.67 -12.42 16 23 C 0.08 3.42 4.42 86.35 0.38 3.81 16 24 C 0.05 1.70 6.60 72.08 0.48 2.18 16 25 O -0.38 -11.49 9.97 -148.98 -1.49 -12.98 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 28 H 0.05 0.90 6.37 -2.39 -0.02 0.88 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.81 8.09 -2.38 -0.02 0.79 16 31 H 0.07 0.87 6.76 -2.39 -0.02 0.86 16 32 H 0.05 0.94 8.00 -2.38 -0.02 0.92 16 33 H 0.05 1.03 8.11 -2.39 -0.02 1.01 16 34 H 0.08 1.02 7.32 -2.39 -0.02 1.00 16 35 H 0.12 1.44 6.54 -2.39 -0.02 1.42 16 36 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.41 7.32 7.21 -92.71 -0.67 6.65 16 38 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 40 H 0.08 1.71 6.88 -2.39 -0.02 1.70 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.81 6.11 -2.38 -0.01 1.79 16 43 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 44 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 46 H 0.03 1.23 6.99 -2.39 -0.02 1.21 16 47 H 0.06 2.81 4.93 -2.38 -0.01 2.80 16 48 H 0.06 1.88 6.25 -2.39 -0.01 1.86 16 49 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 Total: -1.00 -70.17 374.95 2.77 -67.41 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.19 Total: 18.96 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.15 Total: 3.84 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.71 Total: -105.72 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.53 Total: -31.90 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -70.17 2.77 -67.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108129700.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.511 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds