Wall clock time and date at job start Tue Mar 31 2020 10:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47142 * 2 1 4 4 C 1.52999 * 109.47486 * 240.00346 * 2 1 3 5 5 C 1.50705 * 109.47280 * 119.99983 * 2 1 3 6 6 C 1.32988 * 119.99676 * 0.02562 * 5 2 1 7 7 C 1.47101 * 119.99829 * 179.97438 * 6 5 2 8 8 O 1.21617 * 120.00109 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00115 * 179.97438 * 7 6 5 10 10 C 1.46507 * 120.00253 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47156 * 180.02562 * 10 9 7 12 12 H 1.09003 * 108.44634 * 57.88284 * 11 10 9 13 13 C 1.47483 * 108.54966 * 175.84922 * 11 10 9 14 14 N 1.50111 * 106.48793 * 178.01385 * 13 11 10 15 15 C 1.36943 * 120.63679 * 111.37401 * 14 13 11 16 16 H 1.07994 * 119.99930 * 216.76081 * 15 14 13 17 17 C 1.38809 * 119.99687 * 36.75894 * 15 14 13 18 18 N 1.31626 * 119.99796 * 199.00954 * 17 15 14 19 19 Si 1.86797 * 120.00395 * 19.01196 * 17 15 14 20 20 H 1.48503 * 109.46727 * 264.28113 * 19 17 15 21 21 H 1.48497 * 109.47036 * 24.27980 * 19 17 15 22 22 H 1.48495 * 109.47266 * 144.28343 * 19 17 15 23 23 C 1.43425 * 118.72845 * 291.10011 * 14 13 11 24 24 C 1.55333 * 116.23822 * 89.62950 * 23 14 13 25 25 C 1.55189 * 108.87298 * 319.45983 * 24 23 14 26 26 O 1.39648 * 110.56648 * 322.14818 * 25 24 23 27 27 H 1.08996 * 109.47354 * 299.99343 * 1 2 3 28 28 H 1.09002 * 109.47085 * 60.00637 * 1 2 3 29 29 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47347 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46968 * 300.00190 * 3 2 1 32 32 H 1.09005 * 109.46422 * 59.99826 * 3 2 1 33 33 H 1.09002 * 109.46917 * 299.99519 * 4 2 1 34 34 H 1.08994 * 109.47144 * 59.99491 * 4 2 1 35 35 H 1.09001 * 109.47426 * 180.02562 * 4 2 1 36 36 H 1.08005 * 119.99751 * 180.02562 * 5 2 1 37 37 H 1.08002 * 120.00192 * 359.97438 * 6 5 2 38 38 H 0.96999 * 120.00301 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.46399 * 60.00468 * 10 9 7 40 40 H 1.08995 * 109.47026 * 300.00443 * 10 9 7 41 41 H 1.09003 * 110.11149 * 58.79693 * 13 11 10 42 42 H 1.08998 * 110.15254 * 297.24883 * 13 11 10 43 43 H 0.96999 * 119.99828 * 179.97438 * 18 17 15 44 44 H 1.09000 * 108.12881 * 211.38168 * 23 14 13 45 45 H 1.08997 * 108.12420 * 328.08057 * 23 14 13 46 46 H 1.08992 * 109.57483 * 79.28124 * 24 23 14 47 47 H 1.09006 * 109.56679 * 199.64583 * 24 23 14 48 48 H 1.08997 * 109.25373 * 82.42608 * 25 24 23 49 49 H 1.09000 * 109.25741 * 201.90689 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1681 -1.2163 2.1056 7 6 1.6585 -1.9102 3.3064 8 8 2.8541 -2.0209 3.4991 9 7 0.7827 -2.4224 4.1936 10 6 1.2710 -3.1130 5.3898 11 6 0.0810 -3.5944 6.2223 12 1 -0.5324 -4.2476 5.6016 13 6 0.5926 -4.3718 7.3664 14 7 -0.6049 -4.7776 8.1753 15 6 -0.9900 -6.0902 8.2418 16 1 -2.0392 -6.3444 8.2678 17 6 -0.0316 -7.0937 8.2757 18 7 -0.3617 -8.3297 7.9661 19 14 1.7266 -6.6902 8.7608 20 1 2.5384 -6.4657 7.5377 21 1 1.7403 -5.4625 9.5962 22 1 2.2989 -7.8215 9.5339 23 6 -1.3347 -3.7652 8.8821 24 6 -2.4945 -3.0852 8.1042 25 6 -2.0412 -2.8402 6.6403 26 8 -0.6971 -2.4634 6.5995 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7215 -1.2490 36 1 3.0942 -0.8087 1.4016 37 1 0.1063 -1.1176 1.9347 38 1 -0.1710 -2.3338 4.0401 39 1 1.8765 -2.4278 5.9831 40 1 1.8766 -3.9693 5.0931 41 1 1.2589 -3.7557 7.9702 42 1 1.1208 -5.2572 7.0127 43 1 0.3082 -9.0309 7.9895 44 1 -1.7493 -4.2138 9.7849 45 1 -0.6317 -2.9889 9.1840 46 1 -3.3695 -3.7350 8.1115 47 1 -2.7407 -2.1331 8.5744 48 1 -2.1755 -3.7558 6.0644 49 1 -2.6494 -2.0481 6.2035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149446361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:20 Heat of formation + Delta-G solvation = -47.745475 kcal Electronic energy + Delta-G solvation = -26484.357601 eV Core-core repulsion = 22833.544754 eV Total energy + Delta-G solvation = -3650.812847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.95298 -39.16029 -37.90454 -35.27568 -34.77766 -32.41259 -31.86647 -31.49092 -28.95480 -27.70474 -27.59246 -26.14573 -25.61952 -23.51219 -22.35905 -21.38918 -20.22108 -19.73015 -18.48370 -17.48286 -17.11734 -16.41612 -15.82964 -15.74221 -15.12612 -14.93337 -14.81074 -14.48374 -14.45646 -14.13821 -13.99860 -13.43204 -13.03829 -12.81094 -12.68685 -12.62046 -12.49891 -12.41331 -12.29589 -12.04724 -12.03576 -11.56334 -11.39191 -11.31852 -11.25275 -11.03725 -10.78187 -10.60382 -10.30411 -10.10165 -9.90932 -9.81740 -9.61194 -9.59493 -9.08685 -8.89714 -8.65276 -6.94180 -6.05557 -3.50118 1.30469 3.26576 3.31061 3.36879 3.44409 3.50007 4.23432 4.32979 4.43590 4.46034 4.61415 4.71464 4.88717 5.02048 5.11872 5.25803 5.26824 5.28763 5.32927 5.41218 5.41316 5.51411 5.51849 5.55412 5.66416 5.67724 5.76704 5.78194 5.85276 5.86423 5.93676 5.97272 6.01859 6.11147 6.21058 6.23320 6.29633 6.39975 6.48367 6.51178 6.58567 6.68979 6.84528 7.60972 7.63175 7.94760 8.32917 8.33968 8.87057 9.62173 10.06758 11.09836 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.003017 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.799222 B = 9279.571046 C =10010.851934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.059 4.059 6 C -0.216 4.216 7 C 0.541 3.459 8 O -0.553 6.553 9 N -0.714 5.714 10 C 0.113 3.887 11 C 0.063 3.937 12 H 0.073 0.927 13 C 0.101 3.899 14 N -0.599 5.599 15 C -0.270 4.270 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.902 5.902 19 Si 0.877 3.123 20 H -0.285 1.285 21 H -0.266 1.266 22 H -0.299 1.299 23 C 0.159 3.841 24 C -0.170 4.170 25 C 0.062 3.938 26 O -0.354 6.354 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.402 0.598 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.264 0.736 44 H 0.048 0.952 45 H 0.032 0.968 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 17.381 -15.179 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.236 4.236 7 C 0.329 3.671 8 O -0.433 6.433 9 N -0.364 5.364 10 C -0.012 4.012 11 C 0.004 3.996 12 H 0.091 0.909 13 C -0.024 4.024 14 N -0.321 5.321 15 C -0.398 4.398 16 H 0.099 0.901 17 C -0.166 4.166 18 N -0.543 5.543 19 Si 0.706 3.294 20 H -0.213 1.213 21 H -0.191 1.191 22 H -0.227 1.227 23 C 0.031 3.969 24 C -0.211 4.211 25 C -0.015 4.015 26 O -0.272 6.272 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.236 0.764 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.927 17.260 -14.944 22.850 hybrid contribution 0.295 -0.195 0.240 0.427 sum 1.222 17.065 -14.705 22.560 Atomic orbital electron populations 1.22013 0.94021 1.02324 1.02209 1.19780 0.96036 0.95582 0.93440 1.21831 1.01393 0.94206 1.02146 1.21832 1.01403 1.00423 0.95946 1.23685 1.00350 0.91310 0.92504 1.22781 1.00978 1.03886 0.95980 1.18639 0.86129 0.78787 0.83496 1.90776 1.15856 1.59461 1.77167 1.45811 1.09972 1.57541 1.23050 1.21751 0.96802 0.97350 0.85264 1.22110 0.93067 0.87888 0.96559 0.90885 1.21453 0.91228 0.97617 0.92082 1.44149 1.29893 1.04062 1.53974 1.18802 0.93520 0.79778 1.47749 0.90100 1.25468 0.98153 0.94885 0.98130 1.69837 1.34675 1.01051 1.48781 0.86902 0.85743 0.77785 0.78934 1.21270 1.19065 1.22697 1.20332 0.92514 0.90924 0.93155 1.23550 1.00792 0.99865 0.96917 1.22448 0.82966 0.99039 0.97080 1.87601 1.17579 1.32168 1.89900 0.92016 0.92215 0.92004 0.92222 0.92082 0.92288 0.92255 0.92077 0.92215 0.85652 0.85199 0.76414 0.90834 0.90313 0.93413 0.89867 0.92595 0.93408 0.94995 0.91996 0.92417 0.92361 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 7.13 37.16 0.26 -0.70 16 2 C -0.05 -0.35 0.99 -155.66 -0.15 -0.51 16 3 C -0.14 -0.91 8.46 37.16 0.31 -0.59 16 4 C -0.14 -0.92 8.46 37.16 0.31 -0.61 16 5 C -0.06 -0.59 8.33 -36.13 -0.30 -0.89 16 6 C -0.22 -2.34 9.00 -37.81 -0.34 -2.68 16 7 C 0.54 7.95 7.76 -12.67 -0.10 7.85 16 8 O -0.55 -10.20 16.22 5.26 0.09 -10.12 16 9 N -0.71 -9.98 5.43 -61.49 -0.33 -10.31 16 10 C 0.11 1.83 5.24 -4.04 -0.02 1.81 16 11 C 0.06 1.11 2.11 -29.39 -0.06 1.05 16 12 H 0.07 1.32 6.77 -51.93 -0.35 0.97 16 13 C 0.10 2.12 3.48 -4.68 -0.02 2.10 16 14 N -0.60 -13.78 2.19 -174.21 -0.38 -14.16 16 15 C -0.27 -7.29 9.96 -15.06 -0.15 -7.44 16 16 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 17 C 0.03 0.96 5.27 -17.43 -0.09 0.87 16 18 N -0.90 -26.94 13.97 55.49 0.78 -26.17 16 19 Si 0.88 21.85 24.76 -169.99 -4.21 17.64 16 20 H -0.29 -6.86 6.74 56.52 0.38 -6.48 16 21 H -0.27 -6.54 7.08 56.52 0.40 -6.14 16 22 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 23 C 0.16 3.18 5.33 -4.43 -0.02 3.16 16 24 C -0.17 -2.81 6.75 -24.33 -0.16 -2.98 16 25 C 0.06 0.97 6.38 38.32 0.24 1.22 16 26 O -0.35 -5.95 9.53 -31.96 -0.30 -6.25 16 27 H 0.06 0.40 7.50 -51.93 -0.39 0.01 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 7.50 -51.93 -0.39 0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.13 1.41 7.49 -52.48 -0.39 1.02 16 37 H 0.13 1.10 5.74 -52.49 -0.30 0.80 16 38 H 0.40 4.72 8.31 -40.82 -0.34 4.38 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.08 1.88 4.55 -51.93 -0.24 1.65 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.05 0.98 7.98 -51.93 -0.41 0.56 16 45 H 0.03 0.62 7.97 -51.93 -0.41 0.21 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 0.97 6.66 -51.93 -0.35 0.62 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -31.62 380.31 -7.57 -39.19 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.65 Total: 2.80 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.29 Total: 1.65 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.06 Total: -50.64 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.22 Total: -16.37 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.21 Total: 17.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.62 -7.57 -39.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149446361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.557 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds