Wall clock time and date at job start Tue Mar 31 2020 10:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47142 * 2 1 4 4 C 1.52999 * 109.47486 * 240.00346 * 2 1 3 5 5 C 1.50705 * 109.47280 * 119.99983 * 2 1 3 6 6 C 1.32988 * 119.99676 * 0.02562 * 5 2 1 7 7 C 1.47101 * 119.99829 * 179.97438 * 6 5 2 8 8 O 1.21617 * 120.00109 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00115 * 179.97438 * 7 6 5 10 10 C 1.46507 * 120.00253 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47156 * 180.02562 * 10 9 7 12 12 H 1.09003 * 108.44634 * 57.88284 * 11 10 9 13 13 C 1.47483 * 108.54966 * 175.84922 * 11 10 9 14 14 N 1.50111 * 106.48793 * 178.01385 * 13 11 10 15 15 C 1.36943 * 120.63679 * 111.37401 * 14 13 11 16 16 H 1.07994 * 119.99930 * 216.76081 * 15 14 13 17 17 C 1.38809 * 119.99687 * 36.75894 * 15 14 13 18 18 N 1.31626 * 119.99796 * 199.00954 * 17 15 14 19 19 Si 1.86797 * 120.00395 * 19.01196 * 17 15 14 20 20 H 1.48503 * 109.46727 * 264.28113 * 19 17 15 21 21 H 1.48497 * 109.47036 * 24.27980 * 19 17 15 22 22 H 1.48495 * 109.47266 * 144.28343 * 19 17 15 23 23 C 1.43425 * 118.72845 * 291.10011 * 14 13 11 24 24 C 1.55333 * 116.23822 * 89.62950 * 23 14 13 25 25 C 1.55189 * 108.87298 * 319.45983 * 24 23 14 26 26 O 1.39648 * 110.56648 * 322.14818 * 25 24 23 27 27 H 1.08996 * 109.47354 * 299.99343 * 1 2 3 28 28 H 1.09002 * 109.47085 * 60.00637 * 1 2 3 29 29 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47347 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46968 * 300.00190 * 3 2 1 32 32 H 1.09005 * 109.46422 * 59.99826 * 3 2 1 33 33 H 1.09002 * 109.46917 * 299.99519 * 4 2 1 34 34 H 1.08994 * 109.47144 * 59.99491 * 4 2 1 35 35 H 1.09001 * 109.47426 * 180.02562 * 4 2 1 36 36 H 1.08005 * 119.99751 * 180.02562 * 5 2 1 37 37 H 1.08002 * 120.00192 * 359.97438 * 6 5 2 38 38 H 0.96999 * 120.00301 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.46399 * 60.00468 * 10 9 7 40 40 H 1.08995 * 109.47026 * 300.00443 * 10 9 7 41 41 H 1.09003 * 110.11149 * 58.79693 * 13 11 10 42 42 H 1.08998 * 110.15254 * 297.24883 * 13 11 10 43 43 H 0.96999 * 119.99828 * 179.97438 * 18 17 15 44 44 H 1.09000 * 108.12881 * 211.38168 * 23 14 13 45 45 H 1.08997 * 108.12420 * 328.08057 * 23 14 13 46 46 H 1.08992 * 109.57483 * 79.28124 * 24 23 14 47 47 H 1.09006 * 109.56679 * 199.64583 * 24 23 14 48 48 H 1.08997 * 109.25373 * 82.42608 * 25 24 23 49 49 H 1.09000 * 109.25741 * 201.90689 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1681 -1.2163 2.1056 7 6 1.6585 -1.9102 3.3064 8 8 2.8541 -2.0209 3.4991 9 7 0.7827 -2.4224 4.1936 10 6 1.2710 -3.1130 5.3898 11 6 0.0810 -3.5944 6.2223 12 1 -0.5324 -4.2476 5.6016 13 6 0.5926 -4.3718 7.3664 14 7 -0.6049 -4.7776 8.1753 15 6 -0.9900 -6.0902 8.2418 16 1 -2.0392 -6.3444 8.2678 17 6 -0.0316 -7.0937 8.2757 18 7 -0.3617 -8.3297 7.9661 19 14 1.7266 -6.6902 8.7608 20 1 2.5384 -6.4657 7.5377 21 1 1.7403 -5.4625 9.5962 22 1 2.2989 -7.8215 9.5339 23 6 -1.3347 -3.7652 8.8821 24 6 -2.4945 -3.0852 8.1042 25 6 -2.0412 -2.8402 6.6403 26 8 -0.6971 -2.4634 6.5995 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7215 -1.2490 36 1 3.0942 -0.8087 1.4016 37 1 0.1063 -1.1176 1.9347 38 1 -0.1710 -2.3338 4.0401 39 1 1.8765 -2.4278 5.9831 40 1 1.8766 -3.9693 5.0931 41 1 1.2589 -3.7557 7.9702 42 1 1.1208 -5.2572 7.0127 43 1 0.3082 -9.0309 7.9895 44 1 -1.7493 -4.2138 9.7849 45 1 -0.6317 -2.9889 9.1840 46 1 -3.3695 -3.7350 8.1115 47 1 -2.7407 -2.1331 8.5744 48 1 -2.1755 -3.7558 6.0644 49 1 -2.6494 -2.0481 6.2035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149446361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:19 Heat of formation + Delta-G solvation = -68.440959 kcal Electronic energy + Delta-G solvation = -26485.255024 eV Core-core repulsion = 22833.544754 eV Total energy + Delta-G solvation = -3651.710270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24656 -40.41510 -38.62035 -37.01196 -36.07360 -33.97030 -33.62071 -32.46720 -30.48827 -28.20078 -28.09233 -27.57212 -27.31592 -24.81605 -23.72088 -22.80819 -21.37719 -21.26095 -19.25820 -18.95365 -18.50285 -17.87147 -17.38083 -17.10400 -16.29356 -16.10499 -16.00823 -15.79524 -15.65884 -15.07574 -15.01415 -14.74569 -14.50036 -14.39828 -14.21701 -13.99821 -13.72459 -13.18772 -13.15557 -13.13684 -13.04604 -12.89370 -12.53174 -12.50663 -12.32362 -11.94430 -11.92603 -11.89623 -11.81215 -11.63380 -11.60516 -11.33919 -11.01391 -10.76746 -10.49423 -10.45450 -10.06513 -8.85764 -8.23162 -5.63734 0.39693 1.27165 1.39477 1.49430 2.17454 2.30222 2.37623 2.86445 2.94317 3.26192 3.59981 3.85437 3.88233 3.95232 4.09029 4.13283 4.22431 4.27847 4.29313 4.35651 4.41631 4.44802 4.46145 4.61053 4.68475 4.72575 4.77422 4.79968 4.88772 4.92092 5.01364 5.01554 5.04396 5.14188 5.15889 5.18967 5.23826 5.30319 5.31096 5.34780 5.43405 5.47198 5.57710 5.88654 6.15856 6.25243 6.55294 6.89867 7.21296 7.54665 8.04145 8.96229 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.003017 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.799222 B = 9279.571046 C =10010.851934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.047 4.047 6 C -0.223 4.223 7 C 0.536 3.464 8 O -0.598 6.598 9 N -0.705 5.705 10 C 0.122 3.878 11 C 0.078 3.922 12 H 0.069 0.931 13 C 0.098 3.902 14 N -0.610 5.610 15 C -0.253 4.253 16 H 0.049 0.951 17 C -0.018 4.018 18 N -0.948 5.948 19 Si 0.934 3.066 20 H -0.273 1.273 21 H -0.260 1.260 22 H -0.307 1.307 23 C 0.150 3.850 24 C -0.163 4.163 25 C 0.060 3.940 26 O -0.351 6.351 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.159 0.841 38 H 0.415 0.585 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.263 0.737 44 H 0.034 0.966 45 H 0.040 0.960 46 H 0.058 0.942 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 20.191 -16.630 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.046 4.046 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.067 4.067 6 C -0.244 4.244 7 C 0.327 3.673 8 O -0.481 6.481 9 N -0.355 5.355 10 C -0.004 4.004 11 C 0.019 3.981 12 H 0.086 0.914 13 C -0.026 4.026 14 N -0.333 5.333 15 C -0.382 4.382 16 H 0.067 0.933 17 C -0.214 4.214 18 N -0.593 5.593 19 Si 0.762 3.238 20 H -0.200 1.200 21 H -0.184 1.184 22 H -0.236 1.236 23 C 0.023 3.977 24 C -0.203 4.203 25 C -0.017 4.017 26 O -0.269 6.269 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.176 0.824 38 H 0.251 0.749 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.347 20.126 -16.401 25.965 hybrid contribution 0.403 -0.999 0.694 1.282 sum 0.750 19.127 -15.707 24.761 Atomic orbital electron populations 1.22027 0.92943 1.02615 1.03035 1.19839 0.96902 0.95717 0.92173 1.21840 1.01283 0.93611 1.02799 1.21846 1.01294 1.00268 0.96207 1.23889 0.99479 0.90178 0.93175 1.22757 1.02434 1.04517 0.94653 1.19271 0.85507 0.78262 0.84250 1.90753 1.17775 1.61307 1.78269 1.45682 1.10704 1.56958 1.22182 1.21473 0.95908 0.97059 0.85941 1.21732 0.93398 0.87920 0.95089 0.91355 1.21475 0.90490 0.97475 0.93148 1.44223 1.30747 1.03241 1.55138 1.18669 0.92131 0.81714 1.45696 0.93289 1.26013 1.01745 0.94736 0.98939 1.69946 1.35908 1.02116 1.51282 0.85985 0.81749 0.77229 0.78857 1.19984 1.18394 1.23563 1.20522 0.93596 0.90359 0.93226 1.23455 0.98864 1.00614 0.97377 1.22575 0.82753 1.00022 0.96341 1.87615 1.18123 1.31332 1.89838 0.91799 0.90856 0.91977 0.92511 0.90457 0.92611 0.92767 0.90438 0.92505 0.87478 0.82411 0.74869 0.91374 0.91327 0.92678 0.91691 0.92748 0.94733 0.94180 0.92359 0.89624 0.93621 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.13 71.98 0.51 -0.97 16 2 C -0.05 -0.57 0.99 -52.93 -0.05 -0.63 16 3 C -0.14 -1.49 8.46 71.98 0.61 -0.88 16 4 C -0.14 -1.56 8.46 71.98 0.61 -0.95 16 5 C -0.05 -0.88 8.33 24.52 0.20 -0.67 16 6 C -0.22 -4.46 9.00 23.43 0.21 -4.25 16 7 C 0.54 15.28 7.76 86.57 0.67 15.95 16 8 O -0.60 -22.15 16.22 -4.08 -0.07 -22.22 16 9 N -0.70 -18.65 5.43 -466.71 -2.53 -21.18 16 10 C 0.12 3.82 5.24 86.38 0.45 4.28 16 11 C 0.08 2.65 2.11 28.87 0.06 2.71 16 12 H 0.07 2.40 6.77 -2.39 -0.02 2.38 16 13 C 0.10 4.04 3.48 83.95 0.29 4.33 16 14 N -0.61 -27.84 2.19 -705.07 -1.54 -29.38 16 15 C -0.25 -13.87 9.96 84.03 0.84 -13.03 16 16 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 17 C -0.02 -1.02 5.27 84.86 0.45 -0.57 16 18 N -0.95 -58.22 13.97 21.65 0.30 -57.92 16 19 Si 0.93 45.75 24.76 68.60 1.70 47.45 16 20 H -0.27 -12.74 6.74 99.48 0.67 -12.07 16 21 H -0.26 -12.30 7.08 99.48 0.70 -11.60 16 22 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 23 C 0.15 5.81 5.33 87.75 0.47 6.28 16 24 C -0.16 -4.96 6.75 32.15 0.22 -4.75 16 25 C 0.06 1.70 6.38 72.73 0.46 2.16 16 26 O -0.35 -10.83 9.53 -137.27 -1.31 -12.14 16 27 H 0.06 0.62 7.50 -2.39 -0.02 0.60 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.63 7.50 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 2.41 7.49 -2.91 -0.02 2.38 16 37 H 0.16 2.22 5.74 -2.91 -0.02 2.20 16 38 H 0.41 8.74 8.31 -92.71 -0.77 7.97 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.18 8.09 -2.39 -0.02 2.16 16 42 H 0.06 2.91 4.55 -2.39 -0.01 2.90 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 45 H 0.04 1.48 7.97 -2.39 -0.02 1.47 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.05 1.42 6.66 -2.39 -0.02 1.41 16 49 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -69.51 380.31 2.66 -66.85 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.11 Total: 19.55 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.00 Total: 8.99 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -3.77 Total: -108.48 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.38 Total: -34.36 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.70 Total: 47.45 kcal Total: -69.51 2.66 -66.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149446361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.591 kcal (2) G-P(sol) polarization free energy of solvation -69.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds