Wall clock time and date at job start Tue Mar 31 2020 10:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47355 * 2 1 4 4 C 1.53000 * 109.47103 * 120.00252 * 2 1 3 5 5 C 1.52999 * 109.47548 * 64.99947 * 4 2 1 6 6 C 1.50700 * 109.47447 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99789 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99892 * 180.27215 * 6 5 4 9 9 C 1.46982 * 120.72279 * 359.44722 * 8 6 5 10 10 C 1.53595 * 108.21179 * 125.43910 * 9 8 6 11 11 C 1.52511 * 109.72635 * 54.74086 * 10 9 8 12 12 H 1.09002 * 108.39984 * 180.54451 * 11 10 9 13 13 O 1.42687 * 110.62097 * 61.17662 * 11 10 9 14 14 C 1.43073 * 113.87165 * 174.64476 * 13 11 10 15 15 C 1.53227 * 109.44551 * 61.64917 * 14 13 11 16 16 N 1.47175 * 108.70043 * 308.41362 * 15 14 13 17 17 C 1.36930 * 121.22823 * 230.91734 * 16 15 14 18 18 H 1.07995 * 119.99956 * 153.95696 * 17 16 15 19 19 C 1.38819 * 119.99834 * 333.95926 * 17 16 15 20 20 N 1.31619 * 119.99406 * 159.70634 * 19 17 16 21 21 Si 1.86793 * 119.99934 * 339.70698 * 19 17 16 22 22 H 1.48498 * 109.47243 * 91.97274 * 21 19 17 23 23 H 1.48508 * 109.46730 * 211.97405 * 21 19 17 24 24 H 1.48503 * 109.47222 * 331.96819 * 21 19 17 25 25 C 1.47594 * 117.54667 * 50.94220 * 16 15 14 26 26 H 1.09006 * 111.16673 * 187.20441 * 25 16 15 27 27 C 1.46793 * 120.71868 * 179.72375 * 8 6 5 28 28 H 1.08995 * 109.47425 * 60.00179 * 1 2 3 29 29 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47209 * 300.00022 * 1 2 3 31 31 H 1.09000 * 109.47209 * 239.99978 * 2 1 3 32 32 H 1.09003 * 109.47374 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47084 * 300.00167 * 3 2 1 34 34 H 1.09004 * 109.47110 * 60.00319 * 3 2 1 35 35 H 1.09003 * 109.47088 * 305.00055 * 4 2 1 36 36 H 1.09009 * 109.47275 * 184.99923 * 4 2 1 37 37 H 1.09002 * 109.47347 * 60.00087 * 5 4 2 38 38 H 1.09009 * 109.46813 * 300.00258 * 5 4 2 39 39 H 1.09001 * 109.63811 * 245.16969 * 9 8 6 40 40 H 1.08997 * 109.63878 * 5.79290 * 9 8 6 41 41 H 1.08999 * 109.54870 * 294.60424 * 10 9 8 42 42 H 1.08993 * 109.29741 * 174.72482 * 10 9 8 43 43 H 1.09002 * 109.48187 * 181.64231 * 14 13 11 44 44 H 1.09007 * 109.47618 * 301.65285 * 14 13 11 45 45 H 1.08997 * 109.60318 * 68.18817 * 15 14 13 46 46 H 1.09004 * 109.59961 * 188.49741 * 15 14 13 47 47 H 0.97008 * 119.99322 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.51997 * 354.17682 * 27 8 6 49 49 H 1.08999 * 109.51983 * 114.35801 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 6 2.1370 -2.9058 2.4187 7 8 2.7577 -2.2933 3.2616 8 7 1.9012 -4.2230 2.5798 9 6 1.1460 -4.9795 1.5710 10 6 1.9981 -6.1805 1.1344 11 6 2.4015 -6.9973 2.3575 12 1 3.0120 -7.8367 2.0246 13 8 1.2473 -7.5017 3.0279 14 6 1.5477 -8.3794 4.1171 15 6 2.3520 -7.6198 5.1773 16 7 3.4962 -6.9655 4.5225 17 6 4.7697 -7.1149 5.0029 18 1 5.6136 -7.0110 4.3371 19 6 4.9760 -7.3999 6.3458 20 7 6.1150 -7.9299 6.7385 21 14 3.6372 -7.0314 7.5951 22 1 2.7803 -8.2314 7.7710 23 1 4.2588 -6.6720 8.8951 24 1 2.8083 -5.8976 7.1126 25 6 3.2202 -6.1418 3.3293 26 1 4.1452 -5.8123 2.8559 27 6 2.3879 -4.9319 3.7695 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2618 2.1370 36 1 3.1264 -0.6444 1.2952 37 1 2.0699 -2.6551 0.3003 38 1 0.5488 -2.2724 1.1420 39 1 0.2080 -5.3296 2.0020 40 1 0.9420 -4.3412 0.7113 41 1 2.8936 -5.8261 0.6240 42 1 1.4180 -6.8061 0.4561 43 1 0.6194 -8.7436 4.5572 44 1 2.1329 -9.2238 3.7527 45 1 1.7191 -6.8665 5.6463 46 1 2.7109 -8.3179 5.9336 47 1 6.2590 -8.1295 7.6768 48 1 3.0071 -4.2612 4.3653 49 1 1.5395 -5.2703 4.3643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176907820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:54 Heat of formation + Delta-G solvation = -64.301985 kcal Electronic energy + Delta-G solvation = -27606.131028 eV Core-core repulsion = 23954.600237 eV Total energy + Delta-G solvation = -3651.530791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.30163 -38.89551 -36.76570 -35.82542 -34.88842 -32.07811 -31.76801 -31.06210 -29.82695 -27.73800 -27.39392 -25.51513 -24.29818 -23.39721 -23.04224 -21.60105 -20.17817 -19.42558 -18.43191 -17.09726 -16.92784 -15.98558 -15.76250 -15.67558 -15.56598 -15.18210 -14.61740 -14.33608 -14.13708 -14.12511 -13.85685 -13.38514 -13.10850 -13.05131 -12.67187 -12.60401 -12.45938 -12.34546 -12.15195 -11.91980 -11.77540 -11.52147 -11.44926 -11.19225 -11.05656 -10.88977 -10.81340 -10.69935 -10.60403 -10.35667 -10.19217 -9.82074 -9.61447 -9.49502 -9.38549 -8.60818 -8.36048 -7.06350 -6.02318 -3.39906 2.85332 3.19774 3.25545 3.45262 3.47628 4.10506 4.45322 4.48013 4.62800 4.66633 4.70466 4.87860 4.99600 5.03500 5.11428 5.22323 5.25733 5.31582 5.38482 5.43525 5.49289 5.50422 5.56886 5.61131 5.63379 5.70634 5.79916 5.80998 5.83296 5.85538 5.89094 5.97382 5.99854 6.02015 6.11098 6.17607 6.18735 6.27140 6.35532 6.49556 6.54810 6.66490 6.79756 7.61186 7.67697 7.79068 8.23142 8.42763 8.79853 9.61003 9.95786 11.13217 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.003775 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.094057 B = 7416.413940 C = 8217.541173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.100 4.100 5 C -0.139 4.139 6 C 0.508 3.492 7 O -0.543 6.543 8 N -0.609 5.609 9 C 0.112 3.888 10 C -0.123 4.123 11 C 0.079 3.921 12 H 0.057 0.943 13 O -0.383 6.383 14 C 0.050 3.950 15 C 0.088 3.912 16 N -0.598 5.598 17 C -0.261 4.261 18 H 0.089 0.911 19 C 0.027 3.973 20 N -0.905 5.905 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.140 3.860 26 H 0.084 0.916 27 C 0.101 3.899 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.083 0.917 47 H 0.264 0.736 48 H 0.090 0.910 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 9.166 -15.619 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.179 4.179 6 C 0.296 3.704 7 O -0.421 6.421 8 N -0.343 5.343 9 C -0.011 4.011 10 C -0.162 4.162 11 C 0.019 3.981 12 H 0.075 0.925 13 O -0.302 6.302 14 C -0.028 4.028 15 C -0.038 4.038 16 N -0.322 5.322 17 C -0.389 4.389 18 H 0.106 0.894 19 C -0.173 4.173 20 N -0.547 5.547 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.229 1.229 24 H -0.194 1.194 25 C 0.032 3.968 26 H 0.102 0.898 27 C -0.023 4.023 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.979 9.469 -15.047 22.012 hybrid contribution -0.444 -0.102 1.027 1.124 sum -13.423 9.367 -14.020 21.552 Atomic orbital electron populations 1.21912 0.95398 1.01777 1.01655 1.21147 0.95793 0.96356 0.98351 1.21826 1.01129 0.95908 1.01591 1.21418 1.01889 0.92737 0.97750 1.21762 1.02531 0.96857 0.96770 1.20720 0.79774 0.81722 0.88173 1.90700 1.40928 1.65569 1.44859 1.48263 1.54869 1.08324 1.22825 1.21756 0.95093 0.93003 0.91261 1.21893 1.00895 0.96576 0.96826 1.22253 0.87628 0.96280 0.91890 0.92456 1.87736 1.30779 1.64968 1.46756 1.23056 0.99447 0.92203 0.88092 1.22040 0.90009 0.96204 0.95526 1.44553 1.03986 1.52703 1.30948 1.18884 0.82359 1.44876 0.92799 0.89353 1.25249 0.96129 0.99067 0.96810 1.69817 1.25088 1.43344 1.16432 0.87000 0.81770 0.78737 0.81312 1.21555 1.22896 1.19420 1.21588 0.96711 0.89508 0.89018 0.89776 1.22272 0.98834 0.94537 0.86687 0.92905 0.92502 0.92658 0.91227 0.92598 0.92875 0.92650 0.91247 0.91138 0.89132 0.89089 0.90656 0.90109 0.90179 0.90253 0.89629 0.92985 0.94767 0.89951 0.92589 0.89162 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.95 37.16 0.33 -0.74 16 2 C -0.10 -0.79 2.92 -90.62 -0.26 -1.05 16 3 C -0.15 -1.14 9.19 37.15 0.34 -0.80 16 4 C -0.10 -1.05 3.97 -26.73 -0.11 -1.16 16 5 C -0.14 -1.44 3.80 -27.88 -0.11 -1.55 16 6 C 0.51 7.87 7.70 -10.99 -0.08 7.78 16 7 O -0.54 -10.84 15.40 5.56 0.09 -10.76 16 8 N -0.61 -9.34 2.95 -172.51 -0.51 -9.85 16 9 C 0.11 1.29 6.20 -3.47 -0.02 1.27 16 10 C -0.12 -1.47 5.84 -26.67 -0.16 -1.63 16 11 C 0.08 1.29 2.72 -26.89 -0.07 1.21 16 12 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 13 O -0.38 -6.49 9.58 -35.23 -0.34 -6.83 16 14 C 0.05 0.88 6.98 37.27 0.26 1.14 16 15 C 0.09 1.87 3.86 -3.56 -0.01 1.86 16 16 N -0.60 -14.01 2.50 -163.87 -0.41 -14.42 16 17 C -0.26 -7.23 10.16 -15.06 -0.15 -7.39 16 18 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 19 C 0.03 0.78 5.26 -17.43 -0.09 0.68 16 20 N -0.90 -27.57 13.97 55.49 0.78 -26.80 16 21 Si 0.88 22.36 24.31 -169.99 -4.13 18.22 16 22 H -0.29 -6.91 6.58 56.52 0.37 -6.54 16 23 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.27 -6.81 6.57 56.52 0.37 -6.44 16 25 C 0.14 2.76 3.00 -67.07 -0.20 2.56 16 26 H 0.08 1.73 8.03 -51.93 -0.42 1.31 16 27 C 0.10 1.94 5.62 -3.72 -0.02 1.92 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.07 0.84 8.10 -51.92 -0.42 0.42 16 37 H 0.09 0.77 7.72 -51.93 -0.40 0.37 16 38 H 0.09 0.78 6.35 -51.92 -0.33 0.45 16 39 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 40 H 0.08 0.67 5.94 -51.93 -0.31 0.36 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 45 H 0.03 0.74 5.95 -51.93 -0.31 0.43 16 46 H 0.08 1.90 4.58 -51.93 -0.24 1.66 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.09 2.03 7.00 -51.93 -0.36 1.67 16 49 H 0.06 1.29 6.56 -51.93 -0.34 0.95 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -32.53 363.89 -7.97 -40.50 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.57 Total: 0.35 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.36 Total: 4.09 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.14 Total: -51.07 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.25 Total: -17.58 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.13 Total: 18.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.53 -7.97 -40.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176907820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.798 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds