Wall clock time and date at job start Tue Mar 31 2020 10:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47355 * 2 1 4 4 C 1.53000 * 109.47103 * 120.00252 * 2 1 3 5 5 C 1.52999 * 109.47548 * 64.99947 * 4 2 1 6 6 C 1.50700 * 109.47447 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99789 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99892 * 180.27215 * 6 5 4 9 9 C 1.46982 * 120.72279 * 359.44722 * 8 6 5 10 10 C 1.53595 * 108.21179 * 125.43910 * 9 8 6 11 11 C 1.52511 * 109.72635 * 54.74086 * 10 9 8 12 12 H 1.09002 * 108.39984 * 180.54451 * 11 10 9 13 13 O 1.42687 * 110.62097 * 61.17662 * 11 10 9 14 14 C 1.43073 * 113.87165 * 174.64476 * 13 11 10 15 15 C 1.53227 * 109.44551 * 61.64917 * 14 13 11 16 16 N 1.47175 * 108.70043 * 308.41362 * 15 14 13 17 17 C 1.36930 * 121.22823 * 230.91734 * 16 15 14 18 18 H 1.07995 * 119.99956 * 153.95696 * 17 16 15 19 19 C 1.38819 * 119.99834 * 333.95926 * 17 16 15 20 20 N 1.31619 * 119.99406 * 159.70634 * 19 17 16 21 21 Si 1.86793 * 119.99934 * 339.70698 * 19 17 16 22 22 H 1.48498 * 109.47243 * 91.97274 * 21 19 17 23 23 H 1.48508 * 109.46730 * 211.97405 * 21 19 17 24 24 H 1.48503 * 109.47222 * 331.96819 * 21 19 17 25 25 C 1.47594 * 117.54667 * 50.94220 * 16 15 14 26 26 H 1.09006 * 111.16673 * 187.20441 * 25 16 15 27 27 C 1.46793 * 120.71868 * 179.72375 * 8 6 5 28 28 H 1.08995 * 109.47425 * 60.00179 * 1 2 3 29 29 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47209 * 300.00022 * 1 2 3 31 31 H 1.09000 * 109.47209 * 239.99978 * 2 1 3 32 32 H 1.09003 * 109.47374 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47084 * 300.00167 * 3 2 1 34 34 H 1.09004 * 109.47110 * 60.00319 * 3 2 1 35 35 H 1.09003 * 109.47088 * 305.00055 * 4 2 1 36 36 H 1.09009 * 109.47275 * 184.99923 * 4 2 1 37 37 H 1.09002 * 109.47347 * 60.00087 * 5 4 2 38 38 H 1.09009 * 109.46813 * 300.00258 * 5 4 2 39 39 H 1.09001 * 109.63811 * 245.16969 * 9 8 6 40 40 H 1.08997 * 109.63878 * 5.79290 * 9 8 6 41 41 H 1.08999 * 109.54870 * 294.60424 * 10 9 8 42 42 H 1.08993 * 109.29741 * 174.72482 * 10 9 8 43 43 H 1.09002 * 109.48187 * 181.64231 * 14 13 11 44 44 H 1.09007 * 109.47618 * 301.65285 * 14 13 11 45 45 H 1.08997 * 109.60318 * 68.18817 * 15 14 13 46 46 H 1.09004 * 109.59961 * 188.49741 * 15 14 13 47 47 H 0.97008 * 119.99322 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.51997 * 354.17682 * 27 8 6 49 49 H 1.08999 * 109.51983 * 114.35801 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 6 2.1370 -2.9058 2.4187 7 8 2.7577 -2.2933 3.2616 8 7 1.9012 -4.2230 2.5798 9 6 1.1460 -4.9795 1.5710 10 6 1.9981 -6.1805 1.1344 11 6 2.4015 -6.9973 2.3575 12 1 3.0120 -7.8367 2.0246 13 8 1.2473 -7.5017 3.0279 14 6 1.5477 -8.3794 4.1171 15 6 2.3520 -7.6198 5.1773 16 7 3.4962 -6.9655 4.5225 17 6 4.7697 -7.1149 5.0029 18 1 5.6136 -7.0110 4.3371 19 6 4.9760 -7.3999 6.3458 20 7 6.1150 -7.9299 6.7385 21 14 3.6372 -7.0314 7.5951 22 1 2.7803 -8.2314 7.7710 23 1 4.2588 -6.6720 8.8951 24 1 2.8083 -5.8976 7.1126 25 6 3.2202 -6.1418 3.3293 26 1 4.1452 -5.8123 2.8559 27 6 2.3879 -4.9319 3.7695 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2618 2.1370 36 1 3.1264 -0.6444 1.2952 37 1 2.0699 -2.6551 0.3003 38 1 0.5488 -2.2724 1.1420 39 1 0.2080 -5.3296 2.0020 40 1 0.9420 -4.3412 0.7113 41 1 2.8936 -5.8261 0.6240 42 1 1.4180 -6.8061 0.4561 43 1 0.6194 -8.7436 4.5572 44 1 2.1329 -9.2238 3.7527 45 1 1.7191 -6.8665 5.6463 46 1 2.7109 -8.3179 5.9336 47 1 6.2590 -8.1295 7.6768 48 1 3.0071 -4.2612 4.3653 49 1 1.5395 -5.2703 4.3643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176907820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:53 Heat of formation + Delta-G solvation = -86.395004 kcal Electronic energy + Delta-G solvation = -27607.089053 eV Core-core repulsion = 23954.600237 eV Total energy + Delta-G solvation = -3652.488816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.62145 -40.24461 -37.58292 -37.09587 -36.60930 -33.86789 -33.27095 -32.13201 -31.08906 -29.46258 -27.94709 -26.74033 -25.70548 -24.90671 -24.39090 -22.99686 -21.05897 -20.66207 -19.69288 -19.02453 -18.16385 -17.58101 -17.18463 -16.94772 -16.85165 -16.27377 -16.05765 -15.84536 -15.49394 -15.18625 -14.86222 -14.60676 -14.49822 -14.29496 -14.07240 -13.99513 -13.81223 -13.41225 -13.31918 -13.12825 -13.01788 -12.81384 -12.56238 -12.42423 -12.21972 -12.20119 -11.98667 -11.93916 -11.61442 -11.56925 -11.46838 -11.40762 -11.34990 -11.11815 -10.78301 -10.48007 -9.73980 -8.95815 -8.26252 -5.59450 1.18797 1.34838 1.41959 1.65799 1.98789 2.31132 2.76880 2.95291 3.13928 3.53475 3.78285 3.88710 3.97343 4.01637 4.02731 4.12332 4.16912 4.20312 4.24726 4.32150 4.36721 4.41768 4.54777 4.58782 4.60541 4.69213 4.77765 4.81369 4.84589 4.85785 4.89753 4.93329 4.98435 4.99945 5.10006 5.13094 5.18569 5.23833 5.27064 5.35638 5.48262 5.53354 5.58811 5.71523 6.02083 6.21853 6.50373 6.74019 7.22014 7.46327 7.86729 8.93451 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.003775 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.094057 B = 7416.413940 C = 8217.541173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.126 4.126 6 C 0.499 3.501 7 O -0.600 6.600 8 N -0.608 5.608 9 C 0.109 3.891 10 C -0.117 4.117 11 C 0.084 3.916 12 H 0.049 0.951 13 O -0.374 6.374 14 C 0.058 3.942 15 C 0.081 3.919 16 N -0.615 5.615 17 C -0.250 4.250 18 H 0.053 0.947 19 C -0.029 4.029 20 N -0.952 5.952 21 Si 0.943 3.057 22 H -0.261 1.261 23 H -0.310 1.310 24 H -0.273 1.273 25 C 0.136 3.864 26 H 0.064 0.936 27 C 0.115 3.885 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.051 0.949 45 H 0.033 0.967 46 H 0.065 0.935 47 H 0.264 0.736 48 H 0.044 0.956 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.035 9.109 -18.763 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.137 4.137 5 C -0.166 4.166 6 C 0.290 3.710 7 O -0.482 6.482 8 N -0.341 5.341 9 C -0.012 4.012 10 C -0.155 4.155 11 C 0.024 3.976 12 H 0.068 0.932 13 O -0.293 6.293 14 C -0.020 4.020 15 C -0.043 4.043 16 N -0.339 5.339 17 C -0.380 4.380 18 H 0.071 0.929 19 C -0.224 4.224 20 N -0.597 5.597 21 Si 0.772 3.228 22 H -0.187 1.187 23 H -0.239 1.239 24 H -0.198 1.198 25 C 0.028 3.972 26 H 0.082 0.918 27 C -0.010 4.010 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.146 0.854 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.800 9.401 -18.255 26.531 hybrid contribution 0.789 -0.034 1.935 2.089 sum -16.011 9.367 -16.321 24.707 Atomic orbital electron populations 1.21920 0.94313 1.02645 1.01831 1.21112 0.96589 0.95993 0.97263 1.21855 1.00790 0.96176 1.01919 1.21387 1.00434 0.93454 0.98408 1.21827 1.04287 0.95731 0.94705 1.21777 0.78638 0.81495 0.89089 1.90682 1.43485 1.66777 1.47214 1.48351 1.54858 1.08607 1.22284 1.22124 0.94295 0.93245 0.91581 1.21954 1.02101 0.96523 0.94923 1.22270 0.87152 0.95872 0.92261 0.93248 1.87760 1.30585 1.64699 1.46264 1.23007 1.00434 0.91416 0.87099 1.22131 0.89500 0.96037 0.96656 1.44655 1.03120 1.54182 1.31945 1.18792 0.83696 1.43085 0.92380 0.92892 1.25834 0.98329 0.99677 0.98562 1.69938 1.27436 1.45698 1.16677 0.85996 0.79428 0.79160 0.78224 1.18727 1.23896 1.19791 1.21733 0.96823 0.90193 0.88410 0.91766 1.21723 0.97645 0.93579 0.88076 0.91706 0.91260 0.93596 0.89613 0.93254 0.91403 0.93476 0.93441 0.93414 0.85865 0.85991 0.90174 0.85376 0.89113 0.86707 0.85958 0.93029 0.94884 0.91710 0.92705 0.93710 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 71.98 0.64 -0.97 16 2 C -0.09 -1.21 2.92 -10.80 -0.03 -1.24 16 3 C -0.15 -2.09 9.19 71.98 0.66 -1.43 16 4 C -0.10 -1.95 3.97 30.59 0.12 -1.83 16 5 C -0.13 -2.18 3.80 29.85 0.11 -2.07 16 6 C 0.50 14.95 7.70 87.66 0.67 15.62 16 7 O -0.60 -24.91 15.40 -3.02 -0.05 -24.96 16 8 N -0.61 -17.61 2.95 -818.10 -2.42 -20.02 16 9 C 0.11 1.98 6.20 86.49 0.54 2.52 16 10 C -0.12 -2.27 5.84 30.63 0.18 -2.09 16 11 C 0.08 2.55 2.72 30.49 0.08 2.63 16 12 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 13 O -0.37 -11.44 9.58 -148.98 -1.43 -12.87 16 14 C 0.06 1.89 6.98 72.06 0.50 2.39 16 15 C 0.08 3.42 3.86 86.33 0.33 3.76 16 16 N -0.61 -29.46 2.50 -672.36 -1.68 -31.14 16 17 C -0.25 -14.54 10.16 84.04 0.85 -13.68 16 18 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 19 C -0.03 -1.71 5.26 84.86 0.45 -1.26 16 20 N -0.95 -60.61 13.97 21.65 0.30 -60.31 16 21 Si 0.94 47.74 24.31 68.60 1.67 49.40 16 22 H -0.26 -11.99 6.58 99.48 0.65 -11.34 16 23 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 24 H -0.27 -13.77 6.57 99.48 0.65 -13.12 16 25 C 0.14 5.41 3.00 44.95 0.13 5.54 16 26 H 0.06 2.76 8.03 -2.38 -0.02 2.74 16 27 C 0.12 4.50 5.62 86.43 0.49 4.99 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.58 6.56 -2.39 -0.02 0.56 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 37 H 0.12 1.41 7.72 -2.39 -0.02 1.39 16 38 H 0.12 1.43 6.35 -2.38 -0.02 1.42 16 39 H 0.08 1.48 7.94 -2.39 -0.02 1.46 16 40 H 0.13 1.21 5.94 -2.39 -0.01 1.19 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.03 1.40 5.95 -2.39 -0.01 1.39 16 46 H 0.06 2.94 4.58 -2.39 -0.01 2.93 16 47 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 48 H 0.04 2.13 7.00 -2.39 -0.02 2.12 16 49 H 0.06 2.28 6.56 -2.39 -0.02 2.26 16 Total: -1.00 -77.90 363.89 2.95 -74.96 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.81 Total: 12.06 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 5.74 Total: 12.88 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -3.80 Total: -111.47 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.47 Total: -37.83 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.67 Total: 49.40 kcal Total: -77.90 2.95 -74.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176907820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.439 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds