Wall clock time and date at job start Tue Mar 31 2020 09:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00471 * 2 1 4 4 C 1.52996 * 109.47529 * 119.99503 * 3 2 1 5 5 C 1.52995 * 109.47195 * 240.00210 * 3 2 1 6 6 C 1.53003 * 109.47185 * 299.99476 * 5 3 2 7 7 C 1.50700 * 109.46689 * 359.97438 * 3 2 1 8 8 O 1.21282 * 120.00285 * 240.73347 * 7 3 2 9 9 N 1.34782 * 120.00205 * 60.74036 * 7 3 2 10 10 C 1.47509 * 118.75597 * 353.22441 * 9 7 3 11 11 C 1.53568 * 111.03319 * 138.34466 * 10 9 7 12 12 C 1.51537 * 109.57917 * 320.02743 * 11 10 9 13 13 O 1.42150 * 108.75570 * 91.39852 * 12 11 10 14 14 C 1.38021 * 119.43991 * 272.76906 * 13 12 11 15 15 H 1.08996 * 109.46625 * 303.42532 * 14 13 12 16 16 C 1.52994 * 109.46964 * 183.43115 * 14 13 12 17 17 N 1.46506 * 109.47500 * 64.99021 * 16 14 13 18 18 C 1.36936 * 120.00324 * 180.27510 * 17 16 14 19 19 H 1.07994 * 119.99834 * 359.72838 * 18 17 16 20 20 C 1.38815 * 119.99839 * 179.72150 * 18 17 16 21 21 N 1.31618 * 119.99840 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47035 * 90.00616 * 22 20 18 24 24 H 1.48503 * 109.47010 * 210.00174 * 22 20 18 25 25 H 1.48493 * 109.47444 * 330.00368 * 22 20 18 26 26 C 1.45127 * 118.75999 * 173.20248 * 9 7 3 27 27 H 1.08003 * 120.00396 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99556 * 359.97438 * 1 2 3 29 29 H 1.08009 * 119.99847 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47452 * 281.63127 * 4 3 2 31 31 H 1.09003 * 109.46698 * 41.62617 * 4 3 2 32 32 H 1.08997 * 109.47464 * 161.62213 * 4 3 2 33 33 H 1.08997 * 109.47256 * 59.99874 * 5 3 2 34 34 H 1.09002 * 109.47241 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.46727 * 60.00057 * 6 5 3 36 36 H 1.08997 * 109.47309 * 180.02562 * 6 5 3 37 37 H 1.08997 * 109.47349 * 300.00341 * 6 5 3 38 38 H 1.08994 * 109.16863 * 258.74903 * 10 9 7 39 39 H 1.09004 * 109.16681 * 18.00124 * 10 9 7 40 40 H 1.09002 * 109.44939 * 80.05274 * 11 10 9 41 41 H 1.08997 * 109.45699 * 200.01209 * 11 10 9 42 42 H 1.09007 * 109.58754 * 211.17903 * 12 11 10 43 43 H 1.09003 * 109.59021 * 331.46915 * 12 11 10 44 44 H 1.09003 * 109.47542 * 304.99034 * 16 14 13 45 45 H 1.08996 * 109.47344 * 184.98874 * 16 14 13 46 46 H 0.97003 * 119.99161 * 359.97438 * 17 16 14 47 47 H 0.97005 * 119.99740 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.45885 * 149.28322 * 26 9 7 49 49 H 1.08996 * 109.44503 * 29.31897 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3862 1.2492 5 6 2.9432 1.3860 -1.2492 6 6 3.9374 0.2231 -1.2492 7 6 1.0843 2.4505 -0.0006 8 8 1.0808 3.2449 -0.9171 9 7 0.2123 2.5922 1.0173 10 6 0.1360 1.5313 2.0393 11 6 0.0171 2.1306 3.4481 12 6 0.9200 3.3422 3.5625 13 8 0.1771 4.5010 3.2075 14 6 0.1068 4.8824 1.8829 15 1 1.1143 5.0226 1.4913 16 6 -0.6712 6.1950 1.7707 17 7 0.0733 7.2630 2.4427 18 6 -0.4341 8.5344 2.4771 19 1 -1.3810 8.7508 2.0051 20 6 0.2686 9.5450 3.1189 21 7 1.4228 9.2812 3.6939 22 14 -0.4233 11.2795 3.1652 23 1 -1.2714 11.4420 4.3734 24 1 0.6937 12.2570 3.2094 25 1 -1.2423 11.5184 1.9498 26 6 -0.6156 3.7831 1.0668 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 2.3294 1.6549 2.1090 31 1 3.4127 0.4185 1.4264 32 1 3.7140 2.1426 1.1024 33 1 2.3165 1.3284 -2.1392 34 1 3.4879 2.3302 -1.2495 35 1 3.3924 -0.7209 -1.2492 36 1 4.5644 0.2811 -2.1390 37 1 4.5641 0.2808 -0.3593 38 1 -0.7346 0.9060 1.8417 39 1 1.0359 0.9184 1.9868 40 1 -1.0155 2.4291 3.6296 41 1 0.3147 1.3856 4.1860 42 1 1.2766 3.4367 4.5882 43 1 1.7697 3.2297 2.8890 44 1 -1.6472 6.0804 2.2422 45 1 -0.8033 6.4504 0.7193 46 1 0.9236 7.0684 2.8671 47 1 1.9140 9.9875 4.1420 48 1 -1.5671 3.5444 1.5418 49 1 -0.7956 4.1423 0.0535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201336574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:22 Heat of formation + Delta-G solvation = -19.596999 kcal Electronic energy + Delta-G solvation = -27979.019946 eV Core-core repulsion = 24329.427708 eV Total energy + Delta-G solvation = -3649.592237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49332 -38.85178 -36.87619 -35.70281 -34.59823 -32.84064 -32.35387 -30.88428 -29.95674 -28.64838 -26.61638 -25.77710 -24.83298 -22.91781 -22.18755 -21.58586 -20.94884 -20.54107 -18.32117 -17.33660 -16.90033 -16.74767 -16.39529 -15.91031 -15.50369 -15.22574 -14.69579 -14.44082 -14.17917 -13.95972 -13.62914 -13.43474 -13.12172 -13.03096 -12.87988 -12.65804 -12.47067 -12.31079 -12.22010 -12.08398 -11.85503 -11.71871 -11.55701 -11.14577 -11.09808 -10.87571 -10.76338 -10.74431 -10.69825 -10.24928 -10.00323 -9.68711 -9.60165 -9.48324 -9.29949 -8.80140 -8.51724 -6.81789 -5.66737 -2.94764 1.89338 2.53325 2.87164 3.50007 3.54441 3.56610 3.98376 4.13696 4.38316 4.60265 4.65354 4.67629 4.71031 4.81176 4.95830 4.98624 5.12891 5.21585 5.25669 5.26907 5.29789 5.38378 5.45134 5.49847 5.53223 5.60019 5.64013 5.65253 5.66767 5.77453 5.82456 5.87917 5.95545 6.01382 6.05156 6.13363 6.14852 6.24077 6.35833 6.36540 6.54928 6.69584 6.81611 7.22983 7.77453 8.03033 8.10724 8.51545 9.63018 10.21360 10.57381 11.56272 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.003415 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.623484 B = 8198.333331 C = 8561.642879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.051 4.051 4 C -0.158 4.158 5 C -0.096 4.096 6 C -0.152 4.152 7 C 0.519 3.481 8 O -0.528 6.528 9 N -0.608 5.608 10 C 0.085 3.915 11 C -0.171 4.171 12 C 0.070 3.930 13 O -0.367 6.367 14 C 0.090 3.910 15 H 0.050 0.950 16 C 0.166 3.834 17 N -0.726 5.726 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.078 3.922 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.027 0.973 45 H 0.035 0.965 46 H 0.386 0.614 47 H 0.254 0.746 48 H 0.083 0.917 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -25.712 -4.709 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.054 4.054 4 C -0.215 4.215 5 C -0.134 4.134 6 C -0.210 4.210 7 C 0.307 3.693 8 O -0.403 6.403 9 N -0.341 5.341 10 C -0.037 4.037 11 C -0.209 4.209 12 C -0.007 4.007 13 O -0.285 6.285 14 C 0.030 3.970 15 H 0.068 0.932 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.046 4.046 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.220 0.780 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.108 -25.028 -5.100 25.566 hybrid contribution -0.019 0.608 0.100 0.616 sum 1.089 -24.421 -5.000 24.951 Atomic orbital electron populations 1.24420 0.96402 1.03096 0.99380 1.22725 0.95633 0.96872 1.01737 1.19982 0.95064 0.91794 0.98576 1.22291 0.99844 1.03306 0.96021 1.21349 0.96849 0.99495 0.95685 1.21857 0.98977 0.98157 1.01978 1.20556 0.80915 0.86171 0.81685 1.90720 1.69808 1.44778 1.34978 1.47977 1.39590 1.21305 1.25244 1.22846 1.03657 0.89826 0.87364 1.22584 1.03008 0.99164 0.96175 1.22200 0.93160 0.84640 1.00659 1.86437 1.71972 1.44215 1.25922 1.22264 0.98974 0.93805 0.81997 0.93207 1.20609 0.94299 0.85098 0.96224 1.42231 1.24199 1.04624 1.65952 1.19237 1.03117 0.85554 1.28890 0.91185 1.24732 0.97168 0.98122 1.01044 1.69680 1.14898 1.32176 1.41397 0.86180 0.77677 0.84663 0.77629 1.21787 1.21835 1.20776 1.22448 0.94164 0.85038 1.02943 0.87816 0.87187 0.86031 0.90546 0.90917 0.91341 0.91220 0.90914 0.92583 0.92508 0.92380 0.90869 0.87855 0.90010 0.89797 0.89377 0.93248 0.95493 0.94786 0.77975 0.93637 0.89888 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 10.87 29.01 0.32 -1.27 16 2 C -0.15 -1.20 6.73 -36.03 -0.24 -1.44 16 3 C -0.05 -0.51 0.51 -156.82 -0.08 -0.59 16 4 C -0.16 -1.36 7.10 37.16 0.26 -1.10 16 5 C -0.10 -0.98 4.19 -26.73 -0.11 -1.09 16 6 C -0.15 -1.12 9.35 37.16 0.35 -0.78 16 7 C 0.52 7.13 5.27 -10.98 -0.06 7.07 16 8 O -0.53 -9.41 15.38 5.56 0.09 -9.32 16 9 N -0.61 -7.57 1.31 -172.48 -0.23 -7.79 16 10 C 0.08 0.78 3.40 -3.20 -0.01 0.77 16 11 C -0.17 -1.67 5.72 -27.18 -0.16 -1.83 16 12 C 0.07 0.93 6.27 36.42 0.23 1.16 16 13 O -0.37 -6.62 9.38 -26.56 -0.25 -6.86 16 14 C 0.09 1.64 2.68 -25.79 -0.07 1.57 16 15 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 16 C 0.17 3.61 5.92 -4.04 -0.02 3.59 16 17 N -0.73 -19.75 5.54 -59.91 -0.33 -20.08 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -29.34 13.06 55.49 0.72 -28.62 16 22 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.08 1.14 4.92 -3.83 -0.02 1.12 16 27 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 28 H 0.11 1.12 4.64 -52.49 -0.24 0.87 16 29 H 0.12 0.73 7.00 -52.48 -0.37 0.36 16 30 H 0.08 0.67 3.15 -51.93 -0.16 0.51 16 31 H 0.07 0.46 7.36 -51.93 -0.38 0.08 16 32 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 33 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.06 0.36 6.62 -51.93 -0.34 0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.39 6.88 -51.93 -0.36 0.03 16 38 H 0.07 0.59 6.24 -51.93 -0.32 0.26 16 39 H 0.10 0.81 3.09 -51.93 -0.16 0.65 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.65 5.67 -51.93 -0.29 0.35 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.39 11.17 7.65 -40.82 -0.31 10.86 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 49 H 0.09 1.50 7.19 -51.93 -0.37 1.12 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -34.49 362.82 -7.34 -41.83 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.92 Total: 7.71 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 0.14 Total: -0.48 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.17 Total: -56.49 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.16 Total: -16.19 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.49 -7.34 -41.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201336574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.229 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds