Wall clock time and date at job start Tue Mar 31 2020 09:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00471 * 2 1 4 4 C 1.52996 * 109.47529 * 119.99503 * 3 2 1 5 5 C 1.52995 * 109.47195 * 240.00210 * 3 2 1 6 6 C 1.53003 * 109.47185 * 299.99476 * 5 3 2 7 7 C 1.50700 * 109.46689 * 359.97438 * 3 2 1 8 8 O 1.21282 * 120.00285 * 240.73347 * 7 3 2 9 9 N 1.34782 * 120.00205 * 60.74036 * 7 3 2 10 10 C 1.47509 * 118.75597 * 353.22441 * 9 7 3 11 11 C 1.53568 * 111.03319 * 138.34466 * 10 9 7 12 12 C 1.51537 * 109.57917 * 320.02743 * 11 10 9 13 13 O 1.42150 * 108.75570 * 91.39852 * 12 11 10 14 14 C 1.38021 * 119.43991 * 272.76906 * 13 12 11 15 15 H 1.08996 * 109.46625 * 303.42532 * 14 13 12 16 16 C 1.52994 * 109.46964 * 183.43115 * 14 13 12 17 17 N 1.46506 * 109.47500 * 64.99021 * 16 14 13 18 18 C 1.36936 * 120.00324 * 180.27510 * 17 16 14 19 19 H 1.07994 * 119.99834 * 359.72838 * 18 17 16 20 20 C 1.38815 * 119.99839 * 179.72150 * 18 17 16 21 21 N 1.31618 * 119.99840 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47035 * 90.00616 * 22 20 18 24 24 H 1.48503 * 109.47010 * 210.00174 * 22 20 18 25 25 H 1.48493 * 109.47444 * 330.00368 * 22 20 18 26 26 C 1.45127 * 118.75999 * 173.20248 * 9 7 3 27 27 H 1.08003 * 120.00396 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99556 * 359.97438 * 1 2 3 29 29 H 1.08009 * 119.99847 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47452 * 281.63127 * 4 3 2 31 31 H 1.09003 * 109.46698 * 41.62617 * 4 3 2 32 32 H 1.08997 * 109.47464 * 161.62213 * 4 3 2 33 33 H 1.08997 * 109.47256 * 59.99874 * 5 3 2 34 34 H 1.09002 * 109.47241 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.46727 * 60.00057 * 6 5 3 36 36 H 1.08997 * 109.47309 * 180.02562 * 6 5 3 37 37 H 1.08997 * 109.47349 * 300.00341 * 6 5 3 38 38 H 1.08994 * 109.16863 * 258.74903 * 10 9 7 39 39 H 1.09004 * 109.16681 * 18.00124 * 10 9 7 40 40 H 1.09002 * 109.44939 * 80.05274 * 11 10 9 41 41 H 1.08997 * 109.45699 * 200.01209 * 11 10 9 42 42 H 1.09007 * 109.58754 * 211.17903 * 12 11 10 43 43 H 1.09003 * 109.59021 * 331.46915 * 12 11 10 44 44 H 1.09003 * 109.47542 * 304.99034 * 16 14 13 45 45 H 1.08996 * 109.47344 * 184.98874 * 16 14 13 46 46 H 0.97003 * 119.99161 * 359.97438 * 17 16 14 47 47 H 0.97005 * 119.99740 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.45885 * 149.28322 * 26 9 7 49 49 H 1.08996 * 109.44503 * 29.31897 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3862 1.2492 5 6 2.9432 1.3860 -1.2492 6 6 3.9374 0.2231 -1.2492 7 6 1.0843 2.4505 -0.0006 8 8 1.0808 3.2449 -0.9171 9 7 0.2123 2.5922 1.0173 10 6 0.1360 1.5313 2.0393 11 6 0.0171 2.1306 3.4481 12 6 0.9200 3.3422 3.5625 13 8 0.1771 4.5010 3.2075 14 6 0.1068 4.8824 1.8829 15 1 1.1143 5.0226 1.4913 16 6 -0.6712 6.1950 1.7707 17 7 0.0733 7.2630 2.4427 18 6 -0.4341 8.5344 2.4771 19 1 -1.3810 8.7508 2.0051 20 6 0.2686 9.5450 3.1189 21 7 1.4228 9.2812 3.6939 22 14 -0.4233 11.2795 3.1652 23 1 -1.2714 11.4420 4.3734 24 1 0.6937 12.2570 3.2094 25 1 -1.2423 11.5184 1.9498 26 6 -0.6156 3.7831 1.0668 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 2.3294 1.6549 2.1090 31 1 3.4127 0.4185 1.4264 32 1 3.7140 2.1426 1.1024 33 1 2.3165 1.3284 -2.1392 34 1 3.4879 2.3302 -1.2495 35 1 3.3924 -0.7209 -1.2492 36 1 4.5644 0.2811 -2.1390 37 1 4.5641 0.2808 -0.3593 38 1 -0.7346 0.9060 1.8417 39 1 1.0359 0.9184 1.9868 40 1 -1.0155 2.4291 3.6296 41 1 0.3147 1.3856 4.1860 42 1 1.2766 3.4367 4.5882 43 1 1.7697 3.2297 2.8890 44 1 -1.6472 6.0804 2.2422 45 1 -0.8033 6.4504 0.7193 46 1 0.9236 7.0684 2.8671 47 1 1.9140 9.9875 4.1420 48 1 -1.5671 3.5444 1.5418 49 1 -0.7956 4.1423 0.0535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201336574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:21 Heat of formation + Delta-G solvation = -42.314744 kcal Electronic energy + Delta-G solvation = -27980.005061 eV Core-core repulsion = 24329.427708 eV Total energy + Delta-G solvation = -3650.577353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.48927 -40.09841 -37.87426 -36.89107 -36.34694 -34.34551 -33.04352 -32.70984 -30.77000 -30.04354 -27.78625 -26.94805 -26.03841 -24.63386 -23.12253 -22.67405 -22.25592 -21.48748 -19.30241 -19.24460 -18.08782 -17.94364 -17.60384 -16.88469 -16.70506 -16.44656 -16.23638 -15.50985 -15.24698 -15.17686 -14.92685 -14.76825 -14.44142 -14.32603 -14.01137 -13.82923 -13.49338 -13.40830 -13.21310 -12.99592 -12.97086 -12.77990 -12.65249 -12.64579 -12.47694 -12.28662 -12.09681 -11.88239 -11.82131 -11.75163 -11.47976 -11.40456 -11.00061 -10.74104 -10.54083 -10.07784 -9.67414 -9.04116 -7.95987 -5.26245 1.28406 1.45231 1.48263 1.48819 1.57266 1.87810 2.54860 2.69221 3.28264 3.37417 3.59642 3.66039 3.83435 3.88040 3.91761 4.00353 4.03872 4.10948 4.26807 4.32494 4.39535 4.40855 4.45156 4.48355 4.57391 4.65131 4.65943 4.70900 4.80385 4.82135 4.84947 4.93081 5.04077 5.05194 5.08848 5.10805 5.15950 5.19676 5.30280 5.43870 5.45257 5.52584 5.61948 5.77570 6.22655 6.24506 6.71493 7.05147 7.30516 8.03658 8.29601 9.27938 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.003415 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.623484 B = 8198.333331 C = 8561.642879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.048 4.048 4 C -0.157 4.157 5 C -0.096 4.096 6 C -0.145 4.145 7 C 0.510 3.490 8 O -0.582 6.582 9 N -0.603 5.603 10 C 0.082 3.918 11 C -0.161 4.161 12 C 0.060 3.940 13 O -0.395 6.395 14 C 0.108 3.892 15 H 0.017 0.983 16 C 0.163 3.837 17 N -0.740 5.740 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.980 3.020 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.091 3.909 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.034 0.966 45 H 0.033 0.967 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.103 0.897 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -28.713 -3.973 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.051 4.051 4 C -0.213 4.213 5 C -0.134 4.134 6 C -0.202 4.202 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.335 5.335 10 C -0.038 4.038 11 C -0.199 4.199 12 C -0.016 4.016 13 O -0.314 6.314 14 C 0.047 3.953 15 H 0.035 0.965 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.382 4.382 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.808 3.192 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.193 1.193 26 C -0.034 4.034 27 H 0.148 0.852 28 H 0.104 0.896 29 H 0.172 0.828 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.121 0.879 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.462 -28.085 -4.356 28.424 hybrid contribution 0.174 1.513 -0.133 1.528 sum 0.637 -26.572 -4.489 26.956 Atomic orbital electron populations 1.24470 0.96512 1.03183 0.99268 1.22824 0.95575 0.96410 1.01720 1.20025 0.94433 0.91516 0.99096 1.22323 0.99256 1.04769 0.94986 1.21324 0.97155 0.99702 0.95247 1.21825 0.98384 0.97354 1.02653 1.21406 0.81074 0.86601 0.80983 1.90688 1.71307 1.46986 1.37146 1.48054 1.38692 1.20975 1.25796 1.23156 1.05696 0.88990 0.85966 1.22523 1.01639 0.98231 0.97469 1.22518 0.93649 0.84572 1.00858 1.86358 1.72944 1.46749 1.25382 1.21844 0.96948 0.93523 0.82952 0.96545 1.20742 0.94522 0.85747 0.95423 1.42425 1.24131 1.05408 1.66296 1.19686 1.03348 0.86692 1.28462 0.90449 1.25658 0.97640 1.02494 1.01097 1.69855 1.16362 1.33342 1.42527 0.85046 0.76934 0.79082 0.78111 1.21046 1.21983 1.19338 1.22122 0.94809 0.85158 1.01322 0.85174 0.89636 0.82773 0.90591 0.87467 0.92954 0.93060 0.93695 0.90624 0.92388 0.91252 0.88653 0.85891 0.90688 0.86000 0.88572 0.93525 0.94851 0.94896 0.79541 0.93952 0.87899 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 10.87 67.78 0.74 -1.83 16 2 C -0.15 -1.82 6.73 25.65 0.17 -1.65 16 3 C -0.05 -0.90 0.51 -53.68 -0.03 -0.93 16 4 C -0.16 -2.38 7.10 71.98 0.51 -1.87 16 5 C -0.10 -1.97 4.19 30.59 0.13 -1.84 16 6 C -0.15 -1.81 9.35 71.98 0.67 -1.14 16 7 C 0.51 14.29 5.27 87.66 0.46 14.75 16 8 O -0.58 -22.22 15.38 -3.04 -0.05 -22.27 16 9 N -0.60 -14.82 1.31 -817.98 -1.08 -15.90 16 10 C 0.08 1.28 3.40 86.38 0.29 1.58 16 11 C -0.16 -2.69 5.72 30.31 0.17 -2.52 16 12 C 0.06 1.53 6.27 71.50 0.45 1.98 16 13 O -0.40 -14.53 9.38 -117.95 -1.11 -15.64 16 14 C 0.11 4.12 2.68 31.21 0.08 4.20 16 15 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 16 C 0.16 7.38 5.92 86.38 0.51 7.89 16 17 N -0.74 -41.85 5.54 -343.45 -1.90 -43.75 16 18 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 19 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -62.62 13.06 21.65 0.28 -62.34 16 22 Si 0.98 48.23 29.55 68.60 2.03 50.25 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 26 C 0.09 2.73 4.92 87.25 0.43 3.16 16 27 H 0.13 1.03 8.06 -2.91 -0.02 1.01 16 28 H 0.09 1.57 4.64 -2.91 -0.01 1.56 16 29 H 0.15 0.99 7.00 -2.91 -0.02 0.97 16 30 H 0.08 1.16 3.15 -2.39 -0.01 1.15 16 31 H 0.11 0.91 7.36 -2.39 -0.02 0.89 16 32 H 0.05 0.97 8.00 -2.39 -0.02 0.95 16 33 H 0.05 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.07 0.67 6.62 -2.39 -0.02 0.65 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.72 6.88 -2.39 -0.02 0.71 16 38 H 0.10 1.17 6.24 -2.39 -0.01 1.15 16 39 H 0.12 1.48 3.09 -2.39 -0.01 1.48 16 40 H 0.07 1.42 8.01 -2.39 -0.02 1.40 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.05 1.22 5.67 -2.39 -0.01 1.20 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.37 22.66 7.65 -92.71 -0.71 21.95 16 47 H 0.25 15.59 8.31 -92.70 -0.77 14.82 16 48 H 0.10 2.67 8.11 -2.39 -0.02 2.65 16 49 H 0.08 2.61 7.19 -2.39 -0.02 2.59 16 Total: -1.00 -79.26 362.82 4.32 -74.94 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.24 Total: 31.30 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.90 Total: 3.40 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -2.69 Total: -121.99 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.15 Total: -37.90 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.25 kcal Total: -79.26 4.32 -74.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201336574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.621 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds