Wall clock time and date at job start Tue Mar 31 2020 10:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46868 * 2 1 4 4 C 1.52992 * 109.46883 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46868 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47364 * 304.99597 * 6 5 4 8 8 C 1.53002 * 109.46703 * 184.99672 * 6 5 4 9 9 N 1.46505 * 109.47261 * 64.99893 * 6 5 4 10 10 C 1.34768 * 120.00082 * 204.99608 * 9 6 5 11 11 O 1.21345 * 120.00101 * 0.02562 * 10 9 6 12 12 C 1.49453 * 120.00060 * 179.97438 * 10 9 6 13 13 O 1.21347 * 119.99738 * 5.09600 * 12 10 9 14 14 N 1.34782 * 120.00141 * 185.08842 * 12 10 9 15 15 C 1.46497 * 119.99894 * 185.03768 * 14 12 10 16 16 C 1.53005 * 109.46780 * 184.77988 * 15 14 12 17 17 C 1.50694 * 115.55017 * 294.81935 * 16 15 14 18 18 H 1.08003 * 119.99667 * 95.20821 * 17 16 15 19 19 C 1.37878 * 120.00569 * 274.92361 * 17 16 15 20 20 N 1.31513 * 119.99163 * 355.42361 * 19 17 16 21 21 Si 1.86794 * 120.00501 * 175.42139 * 19 17 16 22 22 H 1.48506 * 109.47138 * 59.99993 * 21 19 17 23 23 H 1.48497 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47174 * 300.00591 * 21 19 17 25 25 C 1.53002 * 117.49623 * 80.49302 * 16 15 14 26 26 C 1.53002 * 117.49534 * 149.14978 * 16 15 14 27 27 H 1.08996 * 109.47249 * 59.99891 * 1 2 3 28 28 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47433 * 299.99784 * 1 2 3 30 30 H 1.08990 * 109.47212 * 240.00158 * 2 1 3 31 31 H 1.09002 * 109.47223 * 119.99651 * 2 1 3 32 32 H 1.09003 * 109.46917 * 59.99899 * 3 2 1 33 33 H 1.09002 * 109.46914 * 299.99841 * 3 2 1 34 34 H 1.09003 * 109.47380 * 60.00239 * 4 3 2 35 35 H 1.09002 * 109.47261 * 299.99684 * 4 3 2 36 36 H 1.08990 * 109.47075 * 60.00130 * 5 4 3 37 37 H 1.09002 * 109.46914 * 299.99897 * 5 4 3 38 38 H 1.08998 * 109.46748 * 60.00296 * 8 6 5 39 39 H 1.09000 * 109.46689 * 179.97438 * 8 6 5 40 40 H 1.08996 * 109.47351 * 299.99560 * 8 6 5 41 41 H 0.97003 * 120.00007 * 25.00139 * 9 6 5 42 42 H 0.97004 * 119.99403 * 5.04265 * 14 12 10 43 43 H 1.09003 * 109.46616 * 64.78885 * 15 14 12 44 44 H 1.08993 * 109.47729 * 304.78355 * 15 14 12 45 45 H 0.97009 * 119.99393 * 184.99658 * 20 19 17 46 46 H 1.08995 * 117.49715 * 214.99983 * 25 16 15 47 47 H 1.09003 * 117.49834 * 0.02562 * 25 16 15 48 48 H 1.09005 * 117.49794 * 359.97438 * 26 16 15 49 49 H 1.08999 * 117.49412 * 144.97246 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 6 5.6099 2.8852 0.0013 7 1 5.9733 2.2954 0.8429 8 6 6.1198 4.3222 0.1276 9 7 6.0983 2.3019 -1.2508 10 6 7.3202 1.7355 -1.2988 11 8 8.0158 1.7082 -0.3049 12 6 7.8182 1.1401 -2.5760 13 8 7.1630 1.2478 -3.5916 14 7 8.9951 0.4836 -2.5996 15 6 9.5364 -0.0040 -3.8706 16 6 10.8097 -0.8102 -3.6068 17 6 11.9683 -0.0292 -3.0425 18 1 12.1345 -0.0049 -1.9756 19 6 12.8196 0.6495 -3.8884 20 7 12.6750 0.5426 -5.1912 21 14 14.1781 1.7209 -3.1842 22 1 15.0856 0.8879 -2.3546 23 1 14.9480 2.3375 -4.2942 24 1 13.5804 2.7893 -2.3435 25 6 10.6451 -2.2606 -3.1483 26 6 11.1316 -1.9567 -4.5675 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 3.7162 3.3986 0.8912 37 1 3.7169 3.3992 -0.8887 38 1 5.7564 4.7560 1.0591 39 1 7.2098 4.3221 0.1280 40 1 5.7565 4.9119 -0.7140 41 1 5.5421 2.3236 -2.0453 42 1 9.4835 0.3339 -1.7750 43 1 9.7700 0.8437 -4.5149 44 1 8.7985 -0.6397 -4.3599 45 1 13.3169 0.9608 -5.7863 46 1 11.3749 -2.6499 -2.4385 47 1 9.6297 -2.6405 -3.0350 48 1 10.4360 -2.1368 -5.3872 49 1 12.1814 -2.1457 -4.7916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256829103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:12 Heat of formation + Delta-G solvation = -84.538731 kcal Electronic energy + Delta-G solvation = -25717.888670 eV Core-core repulsion = 22065.480348 eV Total energy + Delta-G solvation = -3652.408322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34074 -38.47645 -37.12040 -36.70945 -35.41111 -33.46419 -32.15992 -31.96682 -30.41489 -27.07251 -26.69742 -25.46707 -23.87355 -22.49036 -21.25540 -21.18930 -20.79479 -19.95503 -19.51023 -17.97766 -16.81903 -16.15383 -15.95964 -15.64619 -15.27071 -14.77785 -14.63933 -14.36319 -14.23869 -14.04398 -13.78515 -13.69206 -13.25982 -13.10912 -12.75283 -12.59572 -12.32555 -12.24963 -11.91823 -11.87152 -11.62428 -11.42813 -11.28202 -11.20740 -11.05563 -10.98073 -10.94749 -10.77494 -10.66084 -10.54265 -10.24933 -9.61918 -9.22569 -9.17221 -9.08296 -8.52489 -8.38544 -8.17859 -6.08597 -4.18262 1.81472 2.71955 3.28752 3.33769 3.37087 3.62294 4.05715 4.27845 4.36158 4.60327 4.64340 4.82459 4.89180 4.92391 4.95861 5.15286 5.18967 5.28513 5.33626 5.34878 5.36092 5.48879 5.53817 5.59980 5.65885 5.68940 5.79358 5.84616 5.93413 5.96283 6.03967 6.07883 6.12009 6.28720 6.37609 6.40252 6.47972 6.67067 6.75425 7.00998 7.08547 7.26549 7.33845 7.50400 7.81215 7.89262 8.17685 8.31815 8.53810 8.83719 9.49325 10.98438 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002776 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.871575 B =10084.979360 C =11126.800998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.124 4.124 5 C -0.126 4.126 6 C 0.139 3.861 7 H 0.091 0.909 8 C -0.166 4.166 9 N -0.701 5.701 10 C 0.509 3.491 11 O -0.519 6.519 12 C 0.494 3.506 13 O -0.542 6.542 14 N -0.666 5.666 15 C 0.159 3.841 16 C 0.021 3.979 17 C -0.501 4.501 18 H 0.061 0.939 19 C 0.073 3.927 20 N -0.876 5.876 21 Si 0.891 3.109 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.210 4.210 26 C -0.139 4.139 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.410 0.590 42 H 0.413 0.587 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.262 0.738 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.844 3.000 9.667 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.035 3.965 7 H 0.109 0.891 8 C -0.224 4.224 9 N -0.356 5.356 10 C 0.290 3.710 11 O -0.394 6.394 12 C 0.273 3.727 13 O -0.421 6.421 14 N -0.316 5.316 15 C 0.037 3.963 16 C 0.021 3.979 17 C -0.538 4.538 18 H 0.079 0.921 19 C -0.131 4.131 20 N -0.512 5.512 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.247 4.247 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.246 0.754 42 H 0.250 0.750 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.718 3.176 9.468 22.103 hybrid contribution 0.833 0.583 0.214 1.039 sum -18.885 3.759 9.682 21.552 Atomic orbital electron populations 1.21778 0.96021 1.01548 1.01663 1.21549 0.95719 0.97030 1.02199 1.21615 0.95299 0.96782 1.01936 1.21650 0.95320 0.96403 1.02775 1.21916 0.93539 0.97727 1.03215 1.21079 0.93619 0.94663 0.87137 0.89113 1.22196 1.02502 0.95665 1.02025 1.45864 1.17175 1.58367 1.14174 1.20480 0.82231 0.79017 0.89281 1.90748 1.55627 1.57006 1.36032 1.19984 0.83171 0.80966 0.88533 1.90706 1.56970 1.59663 1.34761 1.45894 1.19629 1.52743 1.13336 1.21206 0.93808 0.98422 0.82881 1.19025 0.93187 0.85665 1.00069 1.20345 1.10376 1.30095 0.93025 0.92057 1.24988 0.97357 0.95910 0.94836 1.69982 1.35646 1.43633 1.01926 0.86673 0.81803 0.81016 0.78641 1.20196 1.21278 1.20044 1.23033 0.99535 1.02917 0.99228 1.22475 1.00532 1.04294 0.90451 0.92786 0.92857 0.92895 0.91904 0.92076 0.92122 0.91993 0.91526 0.91786 0.90242 0.91159 0.91544 0.91742 0.92285 0.75370 0.75028 0.90840 0.93432 0.92798 0.90222 0.91659 0.91745 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 4 C -0.12 -0.97 5.10 -26.73 -0.14 -1.10 16 5 C -0.13 -0.92 4.75 -26.73 -0.13 -1.05 16 6 C 0.14 1.40 2.58 -67.93 -0.17 1.22 16 7 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 8 C -0.17 -1.61 9.48 37.16 0.35 -1.25 16 9 N -0.70 -8.70 4.52 -54.23 -0.25 -8.94 16 10 C 0.51 8.30 7.85 -11.59 -0.09 8.21 16 11 O -0.52 -9.51 16.16 5.50 0.09 -9.43 16 12 C 0.49 9.29 7.88 -11.58 -0.09 9.20 16 13 O -0.54 -10.98 16.47 5.50 0.09 -10.88 16 14 N -0.67 -13.42 5.46 -60.73 -0.33 -13.75 16 15 C 0.16 3.55 5.53 -4.04 -0.02 3.53 16 16 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 17 C -0.50 -13.03 8.59 -34.44 -0.30 -13.32 16 18 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 19 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 20 N -0.88 -24.14 12.65 55.43 0.70 -23.44 16 21 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 26 C -0.14 -3.16 9.14 -26.69 -0.24 -3.40 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.41 4.68 8.08 -40.82 -0.33 4.35 16 42 H 0.41 8.26 7.84 -40.82 -0.32 7.94 16 43 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 44 H 0.05 1.02 8.05 -51.93 -0.42 0.61 16 45 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 46 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 406.95 15.07 6.13 6.13 Total: -1.00 -28.84 406.95 -8.96 -37.80 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -9.02 Total: 9.78 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.35 Total: -3.11 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.12 Total: -46.13 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.18 Total: -20.31 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.84 -8.96 -37.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256829103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.742 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds