Wall clock time and date at job start Tue Mar 31 2020 10:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46868 * 2 1 4 4 C 1.52992 * 109.46883 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46868 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47364 * 304.99597 * 6 5 4 8 8 C 1.53002 * 109.46703 * 184.99672 * 6 5 4 9 9 N 1.46505 * 109.47261 * 64.99893 * 6 5 4 10 10 C 1.34768 * 120.00082 * 204.99608 * 9 6 5 11 11 O 1.21345 * 120.00101 * 0.02562 * 10 9 6 12 12 C 1.49453 * 120.00060 * 179.97438 * 10 9 6 13 13 O 1.21347 * 119.99738 * 5.09600 * 12 10 9 14 14 N 1.34782 * 120.00141 * 185.08842 * 12 10 9 15 15 C 1.46497 * 119.99894 * 185.03768 * 14 12 10 16 16 C 1.53005 * 109.46780 * 184.77988 * 15 14 12 17 17 C 1.50694 * 115.55017 * 294.81935 * 16 15 14 18 18 H 1.08003 * 119.99667 * 95.20821 * 17 16 15 19 19 C 1.37878 * 120.00569 * 274.92361 * 17 16 15 20 20 N 1.31513 * 119.99163 * 355.42361 * 19 17 16 21 21 Si 1.86794 * 120.00501 * 175.42139 * 19 17 16 22 22 H 1.48506 * 109.47138 * 59.99993 * 21 19 17 23 23 H 1.48497 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47174 * 300.00591 * 21 19 17 25 25 C 1.53002 * 117.49623 * 80.49302 * 16 15 14 26 26 C 1.53002 * 117.49534 * 149.14978 * 16 15 14 27 27 H 1.08996 * 109.47249 * 59.99891 * 1 2 3 28 28 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47433 * 299.99784 * 1 2 3 30 30 H 1.08990 * 109.47212 * 240.00158 * 2 1 3 31 31 H 1.09002 * 109.47223 * 119.99651 * 2 1 3 32 32 H 1.09003 * 109.46917 * 59.99899 * 3 2 1 33 33 H 1.09002 * 109.46914 * 299.99841 * 3 2 1 34 34 H 1.09003 * 109.47380 * 60.00239 * 4 3 2 35 35 H 1.09002 * 109.47261 * 299.99684 * 4 3 2 36 36 H 1.08990 * 109.47075 * 60.00130 * 5 4 3 37 37 H 1.09002 * 109.46914 * 299.99897 * 5 4 3 38 38 H 1.08998 * 109.46748 * 60.00296 * 8 6 5 39 39 H 1.09000 * 109.46689 * 179.97438 * 8 6 5 40 40 H 1.08996 * 109.47351 * 299.99560 * 8 6 5 41 41 H 0.97003 * 120.00007 * 25.00139 * 9 6 5 42 42 H 0.97004 * 119.99403 * 5.04265 * 14 12 10 43 43 H 1.09003 * 109.46616 * 64.78885 * 15 14 12 44 44 H 1.08993 * 109.47729 * 304.78355 * 15 14 12 45 45 H 0.97009 * 119.99393 * 184.99658 * 20 19 17 46 46 H 1.08995 * 117.49715 * 214.99983 * 25 16 15 47 47 H 1.09003 * 117.49834 * 0.02562 * 25 16 15 48 48 H 1.09005 * 117.49794 * 359.97438 * 26 16 15 49 49 H 1.08999 * 117.49412 * 144.97246 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 6 5.6099 2.8852 0.0013 7 1 5.9733 2.2954 0.8429 8 6 6.1198 4.3222 0.1276 9 7 6.0983 2.3019 -1.2508 10 6 7.3202 1.7355 -1.2988 11 8 8.0158 1.7082 -0.3049 12 6 7.8182 1.1401 -2.5760 13 8 7.1630 1.2478 -3.5916 14 7 8.9951 0.4836 -2.5996 15 6 9.5364 -0.0040 -3.8706 16 6 10.8097 -0.8102 -3.6068 17 6 11.9683 -0.0292 -3.0425 18 1 12.1345 -0.0049 -1.9756 19 6 12.8196 0.6495 -3.8884 20 7 12.6750 0.5426 -5.1912 21 14 14.1781 1.7209 -3.1842 22 1 15.0856 0.8879 -2.3546 23 1 14.9480 2.3375 -4.2942 24 1 13.5804 2.7893 -2.3435 25 6 10.6451 -2.2606 -3.1483 26 6 11.1316 -1.9567 -4.5675 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 3.7162 3.3986 0.8912 37 1 3.7169 3.3992 -0.8887 38 1 5.7564 4.7560 1.0591 39 1 7.2098 4.3221 0.1280 40 1 5.7565 4.9119 -0.7140 41 1 5.5421 2.3236 -2.0453 42 1 9.4835 0.3339 -1.7750 43 1 9.7700 0.8437 -4.5149 44 1 8.7985 -0.6397 -4.3599 45 1 13.3169 0.9608 -5.7863 46 1 11.3749 -2.6499 -2.4385 47 1 9.6297 -2.6405 -3.0350 48 1 10.4360 -2.1368 -5.3872 49 1 12.1814 -2.1457 -4.7916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256829103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:11 Heat of formation + Delta-G solvation = -101.178028 kcal Electronic energy + Delta-G solvation = -25718.610204 eV Core-core repulsion = 22065.480348 eV Total energy + Delta-G solvation = -3653.129856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.70118 -39.87702 -38.47531 -38.03451 -36.20714 -35.05251 -33.97282 -33.05737 -31.19064 -28.74157 -27.44856 -27.29155 -25.20849 -23.26448 -22.91099 -21.84425 -21.66507 -21.43802 -21.20542 -19.47437 -18.08258 -17.94592 -17.05121 -16.87075 -16.62022 -16.31773 -16.19858 -15.62515 -15.36276 -14.98827 -14.89682 -14.71729 -14.48275 -14.41809 -13.88069 -13.70746 -13.52516 -13.41504 -13.05469 -12.96343 -12.85573 -12.82976 -12.68382 -12.52313 -12.40101 -12.09161 -12.02268 -11.79078 -11.69585 -11.43890 -11.34013 -11.32112 -10.97870 -10.72282 -10.46238 -10.26837 -10.12368 -9.96550 -8.11524 -6.25178 0.39486 1.41104 1.41181 1.43832 1.49571 2.18682 2.40864 2.73659 3.15890 3.42941 3.58465 3.64106 3.98193 4.02646 4.18900 4.19747 4.28815 4.32774 4.46313 4.50610 4.61384 4.61647 4.67950 4.75515 4.77969 4.80601 4.91288 4.94386 4.95026 5.01330 5.07554 5.08912 5.14328 5.27103 5.27657 5.28785 5.33788 5.37488 5.39526 5.50563 5.52423 5.55014 5.67765 5.76170 6.03891 6.34953 6.47771 6.79543 6.83091 7.01432 7.44357 8.94910 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002776 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.871575 B =10084.979360 C =11126.800998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.114 4.114 4 C -0.123 4.123 5 C -0.116 4.116 6 C 0.135 3.865 7 H 0.080 0.920 8 C -0.163 4.163 9 N -0.682 5.682 10 C 0.514 3.486 11 O -0.542 6.542 12 C 0.494 3.506 13 O -0.557 6.557 14 N -0.670 5.670 15 C 0.175 3.825 16 C -0.003 4.003 17 C -0.509 4.509 18 H 0.057 0.943 19 C 0.028 3.972 20 N -0.903 5.903 21 Si 0.946 3.054 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.181 4.181 26 C -0.145 4.145 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.417 0.583 42 H 0.414 0.586 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.261 0.739 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.566 3.643 11.027 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.151 4.151 4 C -0.161 4.161 5 C -0.154 4.154 6 C 0.032 3.968 7 H 0.098 0.902 8 C -0.221 4.221 9 N -0.335 5.335 10 C 0.294 3.706 11 O -0.420 6.420 12 C 0.275 3.725 13 O -0.437 6.437 14 N -0.320 5.320 15 C 0.052 3.948 16 C -0.004 4.004 17 C -0.546 4.546 18 H 0.075 0.925 19 C -0.173 4.173 20 N -0.540 5.540 21 Si 0.772 3.228 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.218 4.218 26 C -0.183 4.183 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.254 0.746 42 H 0.251 0.749 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.480 3.829 10.841 24.363 hybrid contribution 1.290 0.378 -0.191 1.358 sum -20.189 4.207 10.651 23.211 Atomic orbital electron populations 1.21771 0.95340 1.01754 1.02059 1.21569 0.96360 0.97276 1.01596 1.21574 0.94349 0.96596 1.02617 1.21630 0.96143 0.96576 1.01754 1.21884 0.90937 0.97665 1.04867 1.21333 0.95591 0.94545 0.85290 0.90234 1.22177 1.00640 0.95434 1.03810 1.45903 1.15565 1.56540 1.15494 1.19987 0.83303 0.79519 0.87786 1.90744 1.56577 1.58419 1.36239 1.20448 0.82481 0.80174 0.89441 1.90690 1.57281 1.59989 1.35695 1.45810 1.20225 1.53424 1.12520 1.20822 0.93637 0.97015 0.83366 1.19066 0.93107 0.86730 1.01454 1.20620 1.11029 1.30092 0.92887 0.92457 1.25639 0.99490 0.97052 0.95158 1.70082 1.36441 1.44721 1.02787 0.85807 0.79603 0.79469 0.77924 1.19509 1.21210 1.20208 1.23019 1.00780 1.00340 0.97664 1.22396 0.99644 1.04444 0.91838 0.92612 0.92819 0.92248 0.92907 0.92345 0.91041 0.91617 0.93086 0.92360 0.87996 0.90001 0.89058 0.94577 0.91377 0.74581 0.74931 0.94233 0.92680 0.93040 0.89930 0.89219 0.90638 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.69 5.93 30.60 0.18 -1.51 16 3 C -0.11 -1.31 5.21 30.59 0.16 -1.15 16 4 C -0.12 -1.70 5.10 30.59 0.16 -1.54 16 5 C -0.12 -1.36 4.75 30.60 0.15 -1.21 16 6 C 0.14 2.48 2.58 44.99 0.12 2.59 16 7 H 0.08 1.69 7.58 -2.39 -0.02 1.68 16 8 C -0.16 -2.83 9.48 71.98 0.68 -2.14 16 9 N -0.68 -16.11 4.52 -443.86 -2.01 -18.11 16 10 C 0.51 16.53 7.85 87.27 0.69 17.22 16 11 O -0.54 -19.78 16.16 -3.23 -0.05 -19.83 16 12 C 0.49 18.51 7.88 87.27 0.69 19.20 16 13 O -0.56 -22.40 16.47 -3.24 -0.05 -22.45 16 14 N -0.67 -27.05 5.46 -464.41 -2.54 -29.59 16 15 C 0.18 7.87 5.53 86.38 0.48 8.34 16 16 C 0.00 -0.13 1.47 -52.93 -0.08 -0.21 16 17 C -0.51 -26.61 8.59 25.60 0.22 -26.39 16 18 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 19 C 0.03 1.49 5.43 84.66 0.46 1.95 16 20 N -0.90 -50.62 12.65 21.45 0.27 -50.35 16 21 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 C -0.18 -7.32 9.96 30.62 0.30 -7.01 16 26 C -0.14 -6.56 9.14 30.62 0.28 -6.28 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.86 7.75 -2.39 -0.02 0.84 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.42 8.89 8.08 -92.71 -0.75 8.14 16 42 H 0.41 16.60 7.84 -92.71 -0.73 15.87 16 43 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.05 2.36 8.05 -2.39 -0.02 2.34 16 45 H 0.26 14.09 8.32 -92.70 -0.77 13.32 16 46 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 48 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 49 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -61.86 406.95 2.29 -59.58 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.55 Total: 34.72 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.19 Total: 0.87 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -4.27 Total: -98.05 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.11 Total: -42.28 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -61.86 2.29 -59.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256829103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.602 kcal (2) G-P(sol) polarization free energy of solvation -61.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds