Wall clock time and date at job start Tue Mar 31 2020 11:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47255 * 2 1 4 4 C 1.52993 * 109.47540 * 119.99909 * 2 1 3 5 5 C 1.52998 * 109.47529 * 174.99872 * 4 2 1 6 6 N 1.46894 * 109.47362 * 180.02562 * 5 4 2 7 7 C 1.48045 * 111.00270 * 169.99821 * 6 5 4 8 8 C 1.53474 * 86.05618 * 222.70332 * 7 6 5 9 9 C 1.48040 * 111.00181 * 70.56211 * 6 5 4 10 10 C 1.52772 * 113.55415 * 137.77068 * 8 7 6 11 11 O 1.43392 * 108.24964 * 176.83617 * 10 8 7 12 12 C 1.42815 * 113.34060 * 294.36614 * 11 10 8 13 13 C 1.50283 * 110.49834 * 51.30024 * 12 11 10 14 14 O 1.21277 * 118.97454 * 161.33462 * 13 12 11 15 15 N 1.34270 * 122.05559 * 341.60417 * 13 12 11 16 16 C 1.46499 * 119.38144 * 181.96751 * 15 13 12 17 17 C 1.52999 * 109.47226 * 274.10310 * 16 15 13 18 18 C 1.50706 * 109.46965 * 174.89966 * 17 16 15 19 19 H 1.07997 * 120.00164 * 0.02562 * 18 17 16 20 20 C 1.37868 * 119.99816 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46869 * 89.99990 * 22 20 18 24 24 H 1.48494 * 109.47299 * 210.00383 * 22 20 18 25 25 H 1.48495 * 109.47123 * 330.00532 * 22 20 18 26 26 H 1.09001 * 109.46960 * 299.99882 * 1 2 3 27 27 H 1.08999 * 109.47311 * 59.99977 * 1 2 3 28 28 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46960 * 240.00118 * 2 1 3 30 30 H 1.08994 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47038 * 300.00228 * 3 2 1 32 32 H 1.09001 * 109.47040 * 60.00168 * 3 2 1 33 33 H 1.09005 * 109.46589 * 54.99747 * 4 2 1 34 34 H 1.08993 * 109.47254 * 295.00522 * 4 2 1 35 35 H 1.08993 * 109.47173 * 59.99977 * 5 4 2 36 36 H 1.09001 * 109.46884 * 300.00191 * 5 4 2 37 37 H 1.09001 * 113.77901 * 108.41208 * 7 6 5 38 38 H 1.08999 * 113.77714 * 336.99021 * 7 6 5 39 39 H 1.08998 * 113.78111 * 23.00965 * 9 6 5 40 40 H 1.09006 * 113.78277 * 251.57811 * 9 6 5 41 41 H 1.08993 * 109.71119 * 57.14650 * 10 8 7 42 42 H 1.09001 * 109.74038 * 296.54573 * 10 8 7 43 43 H 1.09000 * 109.27024 * 291.03183 * 12 11 10 44 44 H 1.09001 * 109.26465 * 171.55587 * 12 11 10 45 45 H 1.09002 * 109.46810 * 34.09800 * 16 15 13 46 46 H 1.08998 * 109.47433 * 154.09619 * 16 15 13 47 47 H 1.09004 * 109.46986 * 294.89872 * 17 16 15 48 48 H 1.09000 * 109.46943 * 54.90167 * 17 16 15 49 49 H 0.97006 * 120.00019 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0545 -1.5240 2.3870 7 6 5.4900 -1.8614 2.2558 8 6 5.1171 -3.2207 2.8630 9 6 3.6923 -2.9590 2.3555 10 6 5.8002 -4.4033 2.1782 11 8 5.4332 -5.6002 2.8773 12 6 5.9333 -5.6506 4.2141 13 6 5.5817 -4.3915 4.9553 14 8 5.6173 -4.3940 6.1676 15 7 5.2241 -3.2653 4.3176 16 6 4.9352 -2.0588 5.0967 17 6 3.4722 -2.0788 5.5442 18 6 3.2075 -0.9031 6.4490 19 1 4.0030 -0.2106 6.6813 20 6 1.9495 -0.7109 6.9794 21 7 0.9806 -1.5538 6.6961 22 14 1.6212 0.7470 8.1003 23 1 1.1841 1.9091 7.2857 24 1 0.5549 0.3942 9.0717 25 1 2.8637 1.0965 8.8345 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9995 0.1675 1.1419 36 1 3.8532 -1.3939 0.3001 37 1 6.1424 -1.2609 2.8897 38 1 5.8349 -1.9209 1.2235 39 1 3.5053 -3.3433 1.3528 40 1 2.9146 -3.2318 3.0689 41 1 6.8818 -4.2739 2.2136 42 1 5.4716 -4.4680 1.1409 43 1 7.0173 -5.7623 4.1886 44 1 5.4960 -6.5056 4.7297 45 1 5.5827 -2.0286 5.9731 46 1 5.1150 -1.1772 4.4815 47 1 2.8240 -2.0177 4.6699 48 1 3.2696 -3.0046 6.0828 49 1 0.0956 -1.4187 7.0696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272449321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:58 Heat of formation + Delta-G solvation = -46.013648 kcal Electronic energy + Delta-G solvation = -27828.931808 eV Core-core repulsion = 24178.194059 eV Total energy + Delta-G solvation = -3650.737749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28730 -38.95855 -37.39159 -36.57178 -34.48236 -32.84156 -31.11232 -29.71295 -28.80229 -27.18047 -26.99764 -26.25169 -24.99362 -24.02461 -21.85707 -21.00951 -20.54977 -19.84680 -18.13582 -17.45390 -16.68943 -16.13894 -15.85575 -15.61868 -15.35521 -15.03037 -14.59115 -14.41082 -14.23426 -14.04673 -13.72960 -13.46719 -13.20917 -12.86013 -12.67972 -12.43613 -12.23734 -12.15467 -12.13380 -11.66296 -11.58112 -11.25874 -11.15214 -11.12500 -10.90745 -10.83068 -10.58849 -10.53960 -10.45354 -10.36210 -10.28205 -9.70890 -9.60271 -9.18078 -8.86272 -8.51854 -8.18615 -8.01106 -5.86349 -3.86317 2.89058 3.19215 3.39362 3.45336 3.49545 3.64590 3.94121 4.41582 4.54136 4.57677 4.62070 4.80014 4.91613 4.95736 5.02772 5.19748 5.22621 5.30243 5.30762 5.37652 5.45754 5.48944 5.50437 5.60755 5.61623 5.66330 5.73338 5.83171 5.86296 5.96133 6.08303 6.10369 6.20485 6.25802 6.32500 6.38471 6.53308 6.61960 6.67022 6.73034 6.96789 7.12442 7.20421 7.79497 7.86812 8.12617 8.19052 8.49237 8.60912 9.19608 9.74970 11.25280 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.006999 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.413112 B = 3999.796968 C = 7085.295840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.112 4.112 5 C 0.024 3.976 6 N -0.453 5.453 7 C -0.004 4.004 8 C 0.109 3.891 9 C 0.002 3.998 10 C 0.063 3.937 11 O -0.368 6.368 12 C 0.049 3.951 13 C 0.480 3.520 14 O -0.530 6.530 15 N -0.571 5.571 16 C 0.120 3.880 17 C 0.021 3.979 18 C -0.507 4.507 19 H 0.051 0.949 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.031 0.969 48 H 0.012 0.988 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.659 -2.144 -17.977 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.104 4.104 6 N -0.175 5.175 7 C -0.134 4.134 8 C 0.021 3.979 9 C -0.128 4.128 10 C -0.015 4.015 11 O -0.286 6.286 12 C -0.031 4.031 13 C 0.266 3.734 14 O -0.407 6.407 15 N -0.303 5.303 16 C 0.000 4.000 17 C -0.017 4.017 18 C -0.546 4.546 19 H 0.070 0.930 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.145 0.855 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.050 0.950 48 H 0.030 0.970 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.155 -1.886 -16.823 18.379 hybrid contribution -0.026 0.658 -0.058 0.661 sum 7.129 -1.228 -16.881 18.366 Atomic orbital electron populations 1.21827 0.95267 1.01723 1.01632 1.21073 0.95767 0.96297 0.98087 1.21892 1.00946 0.96108 1.01604 1.21581 0.94029 1.01082 0.98291 1.22692 0.96746 0.99750 0.91226 1.68803 1.03210 1.10783 1.34672 1.24317 0.93887 0.95008 1.00141 1.22166 0.97321 0.95561 0.82884 1.24451 0.98010 0.89470 1.00853 1.22976 0.98861 0.83186 0.96472 1.88134 1.76318 1.39391 1.24783 1.22804 1.00472 0.97199 0.82624 1.20912 0.78180 0.85526 0.88743 1.90769 1.52425 1.83948 1.13599 1.47503 1.65939 1.12500 1.04327 1.21959 1.00944 0.83539 0.93537 1.19328 0.89070 0.96794 0.96489 1.21072 0.95352 1.09908 1.28299 0.93035 1.24926 0.96356 0.96265 0.96636 1.69977 1.01889 1.36427 1.45128 0.86659 0.77878 0.83065 0.80749 1.20847 1.21396 1.19997 0.92360 0.93120 0.92770 0.91886 0.92663 0.93268 0.92335 0.92015 0.90221 0.90556 0.94942 0.88460 0.90517 0.90903 0.87729 0.91792 0.87086 0.89960 0.85502 0.91997 0.90320 0.95034 0.96981 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.09 -1.01 2.92 -90.62 -0.26 -1.28 16 3 C -0.15 -1.53 8.95 37.16 0.33 -1.20 16 4 C -0.11 -1.49 4.75 -26.74 -0.13 -1.62 16 5 C 0.02 0.30 4.57 -3.83 -0.02 0.28 16 6 N -0.45 -6.72 4.65 -240.35 -1.12 -7.84 16 7 C 0.00 -0.05 6.53 -2.95 -0.02 -0.07 16 8 C 0.11 1.51 1.56 -135.16 -0.21 1.30 16 9 C 0.00 0.03 5.71 -2.94 -0.02 0.01 16 10 C 0.06 0.67 6.09 37.04 0.23 0.90 16 11 O -0.37 -4.81 10.84 -35.23 -0.38 -5.19 16 12 C 0.05 0.66 6.94 35.80 0.25 0.90 16 13 C 0.48 8.97 7.61 -11.41 -0.09 8.89 16 14 O -0.53 -12.32 16.55 5.56 0.09 -12.23 16 15 N -0.57 -10.40 2.66 -162.13 -0.43 -10.83 16 16 C 0.12 2.63 4.41 -4.04 -0.02 2.61 16 17 C 0.02 0.56 5.06 -27.88 -0.14 0.42 16 18 C -0.51 -14.86 9.11 -34.44 -0.31 -15.18 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 22 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 31 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.08 0.92 6.56 -51.93 -0.34 0.58 16 36 H 0.03 0.34 7.69 -51.93 -0.40 -0.06 16 37 H 0.10 1.26 6.99 -51.93 -0.36 0.89 16 38 H 0.08 0.68 7.74 -51.93 -0.40 0.28 16 39 H 0.07 0.86 7.54 -51.93 -0.39 0.47 16 40 H 0.10 1.96 6.90 -51.93 -0.36 1.61 16 41 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 42 H 0.11 0.90 7.86 -51.93 -0.41 0.49 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.06 1.47 7.49 -51.93 -0.39 1.08 16 46 H 0.08 1.62 5.44 -51.93 -0.28 1.33 16 47 H 0.03 0.87 6.04 -51.93 -0.31 0.56 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -34.50 377.66 -9.17 -43.67 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.57 Total: -0.15 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.16 Total: -3.63 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.81 Total: -45.63 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.29 Total: -17.42 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.50 -9.17 -43.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272449321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.346 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds