Wall clock time and date at job start Tue Mar 31 2020 11:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47255 * 2 1 4 4 C 1.52993 * 109.47540 * 119.99909 * 2 1 3 5 5 C 1.52998 * 109.47529 * 174.99872 * 4 2 1 6 6 N 1.46894 * 109.47362 * 180.02562 * 5 4 2 7 7 C 1.48045 * 111.00270 * 169.99821 * 6 5 4 8 8 C 1.53474 * 86.05618 * 222.70332 * 7 6 5 9 9 C 1.48040 * 111.00181 * 70.56211 * 6 5 4 10 10 C 1.52772 * 113.55415 * 137.77068 * 8 7 6 11 11 O 1.43392 * 108.24964 * 176.83617 * 10 8 7 12 12 C 1.42815 * 113.34060 * 294.36614 * 11 10 8 13 13 C 1.50283 * 110.49834 * 51.30024 * 12 11 10 14 14 O 1.21277 * 118.97454 * 161.33462 * 13 12 11 15 15 N 1.34270 * 122.05559 * 341.60417 * 13 12 11 16 16 C 1.46499 * 119.38144 * 181.96751 * 15 13 12 17 17 C 1.52999 * 109.47226 * 274.10310 * 16 15 13 18 18 C 1.50706 * 109.46965 * 174.89966 * 17 16 15 19 19 H 1.07997 * 120.00164 * 0.02562 * 18 17 16 20 20 C 1.37868 * 119.99816 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46869 * 89.99990 * 22 20 18 24 24 H 1.48494 * 109.47299 * 210.00383 * 22 20 18 25 25 H 1.48495 * 109.47123 * 330.00532 * 22 20 18 26 26 H 1.09001 * 109.46960 * 299.99882 * 1 2 3 27 27 H 1.08999 * 109.47311 * 59.99977 * 1 2 3 28 28 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46960 * 240.00118 * 2 1 3 30 30 H 1.08994 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47038 * 300.00228 * 3 2 1 32 32 H 1.09001 * 109.47040 * 60.00168 * 3 2 1 33 33 H 1.09005 * 109.46589 * 54.99747 * 4 2 1 34 34 H 1.08993 * 109.47254 * 295.00522 * 4 2 1 35 35 H 1.08993 * 109.47173 * 59.99977 * 5 4 2 36 36 H 1.09001 * 109.46884 * 300.00191 * 5 4 2 37 37 H 1.09001 * 113.77901 * 108.41208 * 7 6 5 38 38 H 1.08999 * 113.77714 * 336.99021 * 7 6 5 39 39 H 1.08998 * 113.78111 * 23.00965 * 9 6 5 40 40 H 1.09006 * 113.78277 * 251.57811 * 9 6 5 41 41 H 1.08993 * 109.71119 * 57.14650 * 10 8 7 42 42 H 1.09001 * 109.74038 * 296.54573 * 10 8 7 43 43 H 1.09000 * 109.27024 * 291.03183 * 12 11 10 44 44 H 1.09001 * 109.26465 * 171.55587 * 12 11 10 45 45 H 1.09002 * 109.46810 * 34.09800 * 16 15 13 46 46 H 1.08998 * 109.47433 * 154.09619 * 16 15 13 47 47 H 1.09004 * 109.46986 * 294.89872 * 17 16 15 48 48 H 1.09000 * 109.46943 * 54.90167 * 17 16 15 49 49 H 0.97006 * 120.00019 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0545 -1.5240 2.3870 7 6 5.4900 -1.8614 2.2558 8 6 5.1171 -3.2207 2.8630 9 6 3.6923 -2.9590 2.3555 10 6 5.8002 -4.4033 2.1782 11 8 5.4332 -5.6002 2.8773 12 6 5.9333 -5.6506 4.2141 13 6 5.5817 -4.3915 4.9553 14 8 5.6173 -4.3940 6.1676 15 7 5.2241 -3.2653 4.3176 16 6 4.9352 -2.0588 5.0967 17 6 3.4722 -2.0788 5.5442 18 6 3.2075 -0.9031 6.4490 19 1 4.0030 -0.2106 6.6813 20 6 1.9495 -0.7109 6.9794 21 7 0.9806 -1.5538 6.6961 22 14 1.6212 0.7470 8.1003 23 1 1.1841 1.9091 7.2857 24 1 0.5549 0.3942 9.0717 25 1 2.8637 1.0965 8.8345 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9995 0.1675 1.1419 36 1 3.8532 -1.3939 0.3001 37 1 6.1424 -1.2609 2.8897 38 1 5.8349 -1.9209 1.2235 39 1 3.5053 -3.3433 1.3528 40 1 2.9146 -3.2318 3.0689 41 1 6.8818 -4.2739 2.2136 42 1 5.4716 -4.4680 1.1409 43 1 7.0173 -5.7623 4.1886 44 1 5.4960 -6.5056 4.7297 45 1 5.5827 -2.0286 5.9731 46 1 5.1150 -1.1772 4.4815 47 1 2.8240 -2.0177 4.6699 48 1 3.2696 -3.0046 6.0828 49 1 0.0956 -1.4187 7.0696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272449321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:57 Heat of formation + Delta-G solvation = -71.172670 kcal Electronic energy + Delta-G solvation = -27830.022785 eV Core-core repulsion = 24178.194059 eV Total energy + Delta-G solvation = -3651.828726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48017 -40.24514 -38.57193 -37.57303 -36.12904 -34.87023 -32.44092 -31.44822 -29.80815 -28.46605 -28.04468 -27.31002 -26.41774 -25.57650 -23.05528 -22.83873 -21.75613 -20.79095 -19.42472 -18.81475 -18.40281 -17.64212 -17.08719 -16.74454 -16.55116 -16.48404 -16.13832 -15.71479 -15.42359 -15.13232 -15.06689 -14.56372 -14.39447 -14.34768 -14.19730 -13.81867 -13.64716 -13.36418 -13.24615 -13.05244 -12.87843 -12.77394 -12.61857 -12.50297 -12.24585 -12.14069 -12.08113 -11.78012 -11.65623 -11.49668 -11.44912 -11.36730 -11.28592 -11.27124 -10.52076 -10.32198 -9.64809 -9.50640 -8.18494 -6.28294 1.34280 1.37471 1.44688 1.48387 1.88027 2.40438 2.67732 2.92051 3.14774 3.28592 3.49049 3.58336 3.84258 3.95580 4.02907 4.12537 4.21404 4.30838 4.33610 4.39110 4.50712 4.52737 4.54691 4.57794 4.67350 4.69032 4.73651 4.78422 4.83486 4.87938 4.90937 4.99708 5.07615 5.10051 5.14119 5.19451 5.27708 5.30133 5.44030 5.53500 5.56736 5.56976 5.73827 5.79860 5.93468 6.21496 6.25027 6.52297 6.86404 7.09764 7.38579 8.93504 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.006999 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.413112 B = 3999.796968 C = 7085.295840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.108 4.108 5 C 0.030 3.970 6 N -0.499 5.499 7 C 0.013 3.987 8 C 0.097 3.903 9 C 0.006 3.994 10 C 0.065 3.935 11 O -0.375 6.375 12 C 0.063 3.937 13 C 0.466 3.534 14 O -0.591 6.591 15 N -0.575 5.575 16 C 0.142 3.858 17 C 0.041 3.959 18 C -0.533 4.533 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.265 1.265 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.150 0.850 43 H 0.122 0.878 44 H 0.133 0.867 45 H 0.037 0.963 46 H 0.095 0.905 47 H 0.016 0.984 48 H -0.043 1.043 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.604 -1.685 -21.257 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.098 4.098 6 N -0.222 5.222 7 C -0.116 4.116 8 C 0.010 3.990 9 C -0.123 4.123 10 C -0.012 4.012 11 O -0.293 6.293 12 C -0.016 4.016 13 C 0.255 3.745 14 O -0.472 6.472 15 N -0.304 5.304 16 C 0.020 3.980 17 C 0.003 3.997 18 C -0.571 4.571 19 H 0.073 0.927 20 C -0.196 4.196 21 N -0.572 5.572 22 Si 0.787 3.213 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.190 1.190 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.034 0.966 48 H -0.025 1.025 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.114 -1.428 -20.161 22.172 hybrid contribution -0.707 0.515 0.936 1.281 sum 8.407 -0.913 -19.226 21.003 Atomic orbital electron populations 1.21848 0.95626 1.01571 1.01557 1.21050 0.95489 0.96590 0.97413 1.21875 1.01485 0.95558 1.01414 1.21518 0.95598 0.99772 0.97720 1.22682 0.95258 1.00264 0.91576 1.68717 1.05367 1.11129 1.36970 1.24343 0.92032 0.92850 1.02402 1.22599 0.97427 0.98831 0.80096 1.24323 0.96774 0.90007 1.01220 1.23310 1.00351 0.80293 0.97214 1.88139 1.76795 1.40397 1.23997 1.22755 1.02670 0.93718 0.82468 1.22103 0.76857 0.86985 0.88517 1.90729 1.55049 1.85033 1.16424 1.47513 1.65176 1.11212 1.06548 1.21364 0.96718 0.86291 0.93644 1.19045 0.92366 0.93486 0.94825 1.21507 0.95854 1.10708 1.29074 0.92674 1.25907 0.96009 0.99447 0.98215 1.70130 1.02382 1.38462 1.46247 0.85492 0.78011 0.79249 0.78564 1.19344 1.20839 1.18983 0.94462 0.91130 0.93011 0.89432 0.91770 0.91499 0.94462 0.93430 0.94950 0.90133 0.91433 0.89445 0.85590 0.87299 0.93512 0.88800 0.83256 0.86078 0.84948 0.94478 0.88726 0.96551 1.02458 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.19 71.98 0.66 -2.49 16 2 C -0.09 -1.76 2.92 -10.80 -0.03 -1.79 16 3 C -0.15 -2.79 8.95 71.98 0.64 -2.15 16 4 C -0.11 -2.92 4.75 30.59 0.15 -2.78 16 5 C 0.03 0.68 4.57 86.30 0.39 1.07 16 6 N -0.50 -14.45 4.65 -914.34 -4.26 -18.70 16 7 C 0.01 0.26 6.53 86.24 0.56 0.83 16 8 C 0.10 2.51 1.56 5.16 0.01 2.52 16 9 C 0.01 0.19 5.71 86.25 0.49 0.68 16 10 C 0.07 1.09 6.09 71.91 0.44 1.53 16 11 O -0.38 -8.62 10.84 -148.98 -1.61 -10.23 16 12 C 0.06 1.60 6.94 71.10 0.49 2.09 16 13 C 0.47 17.86 7.61 87.61 0.67 18.53 16 14 O -0.59 -29.14 16.55 -3.02 -0.05 -29.19 16 15 N -0.57 -21.38 2.66 -785.53 -2.09 -23.47 16 16 C 0.14 6.55 4.41 86.38 0.38 6.93 16 17 C 0.04 2.35 5.06 29.85 0.15 2.51 16 18 C -0.53 -32.83 9.11 25.60 0.23 -32.60 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.93 -60.57 13.29 21.44 0.28 -60.28 16 22 Si 0.96 47.42 29.54 68.60 2.03 49.45 16 23 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.11 6.57 -2.39 -0.02 1.09 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.38 7.54 -2.38 -0.02 1.36 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.75 6.56 -2.39 -0.02 1.74 16 36 H 0.07 1.07 7.69 -2.39 -0.02 1.05 16 37 H 0.09 2.05 6.99 -2.39 -0.02 2.03 16 38 H 0.13 1.45 7.74 -2.39 -0.02 1.43 16 39 H 0.11 2.26 7.54 -2.39 -0.02 2.24 16 40 H 0.05 1.89 6.90 -2.38 -0.02 1.87 16 41 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.15 1.43 7.86 -2.39 -0.02 1.41 16 43 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.04 1.87 7.49 -2.39 -0.02 1.85 16 46 H 0.09 4.02 5.44 -2.39 -0.01 4.01 16 47 H 0.02 0.98 6.04 -2.38 -0.01 0.97 16 48 H -0.04 -2.93 8.14 -2.39 -0.02 -2.95 16 49 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 Total: -1.00 -84.10 377.66 0.91 -83.18 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.91 Total: 13.81 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.70 Total: -4.56 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -6.06 Total: -102.46 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.66 Total: -39.42 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -84.10 0.91 -83.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272449321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.010 kcal (2) G-P(sol) polarization free energy of solvation -84.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds