Wall clock time and date at job start Tue Mar 31 2020 09:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00163 * 2 1 3 5 5 C 1.52996 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47328 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47060 * 60.00126 * 6 5 4 8 8 N 1.46497 * 109.47188 * 59.99892 * 7 6 5 9 9 C 1.34780 * 120.00425 * 154.99985 * 8 7 6 10 10 O 1.21351 * 119.99300 * 0.02562 * 9 8 7 11 11 C 1.49443 * 120.00356 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00343 * 359.97438 * 11 9 8 13 13 N 1.34788 * 120.00147 * 179.97438 * 11 9 8 14 14 C 1.46497 * 120.00216 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.46979 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.46559 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00421 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99461 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00351 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47109 * 59.99740 * 20 18 16 22 22 H 1.48501 * 109.47296 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47239 * 299.99673 * 20 18 16 24 24 C 1.53006 * 109.47127 * 300.00449 * 7 6 5 25 25 C 1.52997 * 109.47164 * 59.99836 * 24 7 6 26 26 H 1.08998 * 109.46505 * 300.00129 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99728 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47002 * 240.00426 * 2 1 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 3 2 1 31 31 H 1.09001 * 109.47289 * 60.00046 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47280 * 300.00199 * 4 2 1 34 34 H 1.09004 * 109.47368 * 60.00217 * 5 4 2 35 35 H 1.09001 * 109.47372 * 300.00372 * 5 4 2 36 36 H 1.09002 * 109.47398 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47194 * 300.00476 * 6 5 4 38 38 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 39 39 H 0.97006 * 120.00119 * 335.00459 * 8 7 6 40 40 H 0.96997 * 119.99367 * 0.02562 * 13 11 9 41 41 H 1.08994 * 109.47495 * 300.00507 * 14 13 11 42 42 H 1.09008 * 109.46918 * 60.00328 * 14 13 11 43 43 H 1.09001 * 109.47287 * 300.00094 * 15 14 13 44 44 H 1.08995 * 109.46816 * 60.00456 * 15 14 13 45 45 H 0.96998 * 119.99803 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.47002 * 299.99574 * 24 7 6 47 47 H 1.09000 * 109.47050 * 179.97438 * 24 7 6 48 48 H 1.09002 * 109.47045 * 180.02562 * 25 24 7 49 49 H 1.09001 * 109.47375 * 59.99966 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0801 -1.4436 2.4977 7 6 3.5697 -2.8859 2.4973 8 7 4.0574 -3.5763 1.3008 9 6 4.1858 -4.9180 1.3020 10 8 3.8968 -5.5541 2.2942 11 6 4.6839 -5.6221 0.0816 12 8 4.9724 -4.9860 -0.9107 13 7 4.8127 -6.9638 0.0831 14 6 5.3005 -7.6542 -1.1135 15 6 5.3515 -9.1601 -0.8481 16 6 5.8539 -9.8701 -2.0788 17 1 6.1106 -9.3040 -2.9620 18 6 5.9847 -11.2427 -2.0776 19 7 5.6716 -11.9322 -1.0023 20 14 6.6067 -12.1230 -3.6033 21 1 7.9683 -11.6330 -3.9369 22 1 6.6564 -13.5846 -3.3458 23 1 5.6905 -11.8510 -4.7399 24 6 2.0396 -2.8855 2.4976 25 6 1.5296 -2.1636 1.2487 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 -0.2075 2.1391 34 1 3.9338 0.3058 1.2487 35 1 3.9330 -1.2358 0.3588 36 1 5.1701 -1.4436 2.4977 37 1 3.7171 -0.9300 3.3880 38 1 3.9326 -3.4002 3.3872 39 1 4.2882 -3.0678 0.5076 40 1 4.5817 -7.4723 0.8761 41 1 4.6276 -7.4551 -1.9475 42 1 6.2996 -7.2940 -1.3588 43 1 6.0242 -9.3595 -0.0140 44 1 4.3522 -9.5199 -0.6031 45 1 5.7640 -12.8978 -1.0014 46 1 1.6766 -2.3718 3.3879 47 1 1.6760 -3.9130 2.4969 48 1 0.4396 -2.1629 1.2492 49 1 1.8926 -2.6772 0.3585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323290813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:53 Heat of formation + Delta-G solvation = -115.291311 kcal Electronic energy + Delta-G solvation = -25968.456238 eV Core-core repulsion = 22314.714383 eV Total energy + Delta-G solvation = -3653.741854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79109 -39.47350 -38.05931 -36.01753 -35.04589 -33.01589 -32.65844 -31.29521 -29.82863 -29.23062 -27.48380 -25.71833 -23.98578 -22.96210 -22.72867 -21.10762 -20.41478 -20.24570 -19.39979 -18.33073 -16.75305 -16.25728 -16.18273 -15.77690 -15.39912 -14.87858 -14.69047 -14.58882 -14.48171 -14.17286 -13.97814 -13.63516 -13.51536 -13.43337 -12.87971 -12.72606 -12.55461 -12.46371 -12.30955 -12.01119 -11.62525 -11.48452 -11.43937 -11.37551 -11.22661 -11.12488 -11.04369 -10.71466 -10.68240 -10.38354 -10.35301 -10.19700 -9.78452 -9.43764 -9.24806 -9.16895 -8.67985 -8.40974 -6.09643 -4.13436 1.65564 2.59477 3.30806 3.34980 3.37732 3.46593 3.92586 4.26582 4.31645 4.39356 4.41210 4.63394 4.74104 4.78236 4.87135 4.95259 5.01453 5.18584 5.20821 5.24678 5.27018 5.29275 5.34508 5.41209 5.53942 5.57045 5.63792 5.69221 5.74498 5.81225 5.84292 5.90233 5.95953 6.00237 6.13392 6.19131 6.21413 6.24592 6.29260 6.61084 6.70655 7.12350 7.47942 7.58469 7.70683 7.87577 7.97362 8.22548 8.36077 8.91940 9.51340 11.01770 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.002292 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.777785 B =12215.123556 C =12675.121193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.081 4.081 5 C -0.121 4.121 6 C -0.127 4.127 7 C 0.144 3.856 8 N -0.698 5.698 9 C 0.508 3.492 10 O -0.521 6.521 11 C 0.496 3.504 12 O -0.535 6.535 13 N -0.686 5.686 14 C 0.119 3.881 15 C 0.011 3.989 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.131 4.131 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.410 0.590 40 H 0.410 0.590 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 26.377 7.573 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.099 4.099 5 C -0.158 4.158 6 C -0.164 4.164 7 C 0.039 3.961 8 N -0.353 5.353 9 C 0.289 3.711 10 O -0.397 6.397 11 C 0.275 3.725 12 O -0.413 6.413 13 N -0.337 5.337 14 C -0.003 4.003 15 C -0.026 4.026 16 C -0.562 4.562 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.169 4.169 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.248 0.752 40 H 0.246 0.754 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.271 26.157 7.644 28.479 hybrid contribution 0.304 -0.620 -0.779 1.041 sum -7.967 25.537 6.865 27.618 Atomic orbital electron populations 1.21895 0.95355 1.01937 1.01480 1.21157 0.95718 0.96079 0.98305 1.21897 1.01205 0.96002 1.01514 1.21214 0.94937 0.95758 0.97993 1.21689 0.95488 1.00743 0.97895 1.21830 1.01158 0.94085 0.99369 1.21041 0.94132 0.92539 0.88349 1.45899 1.65640 1.06283 1.17428 1.20450 0.78721 0.83302 0.88654 1.90747 1.48560 1.65951 1.34411 1.20041 0.80421 0.84052 0.87949 1.90723 1.50060 1.66089 1.34420 1.46234 1.63002 1.05653 1.18830 1.21925 0.98426 0.95226 0.84706 1.19350 0.98210 0.86817 0.98246 1.20974 1.44711 0.91840 0.98723 0.92227 1.25006 0.95284 0.97595 0.96404 1.69953 1.47984 1.07161 1.27977 0.86552 0.79477 0.78365 0.83007 1.20105 1.21233 1.20101 1.21931 0.94823 1.01528 0.98660 1.21647 1.00570 0.94894 0.98403 0.92862 0.92929 0.92299 0.91109 0.92932 0.92866 0.92358 0.91132 0.91130 0.91817 0.91059 0.90212 0.89120 0.75225 0.75409 0.91916 0.91901 0.95672 0.95677 0.92717 0.90916 0.91155 0.91551 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.84 37.16 0.33 -0.63 16 2 C -0.09 -0.62 2.50 -90.62 -0.23 -0.85 16 3 C -0.15 -0.87 8.84 37.16 0.33 -0.54 16 4 C -0.08 -0.53 1.78 -90.62 -0.16 -0.69 16 5 C -0.12 -0.78 4.68 -26.73 -0.13 -0.91 16 6 C -0.13 -0.85 5.61 -26.73 -0.15 -1.00 16 7 C 0.14 1.32 2.78 -67.93 -0.19 1.13 16 8 N -0.70 -7.97 4.23 -54.24 -0.23 -8.20 16 9 C 0.51 7.59 7.85 -11.59 -0.09 7.50 16 10 O -0.52 -8.75 16.14 5.50 0.09 -8.67 16 11 C 0.50 8.60 7.89 -11.58 -0.09 8.51 16 12 O -0.53 -10.15 16.48 5.50 0.09 -10.06 16 13 N -0.69 -12.64 5.55 -60.73 -0.34 -12.97 16 14 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 15 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 20 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.13 -1.14 5.60 -26.73 -0.15 -1.29 16 25 C -0.12 -0.94 4.69 -26.73 -0.13 -1.07 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.33 6.43 -51.93 -0.33 -0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 35 H 0.06 0.47 6.50 -51.93 -0.34 0.13 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 39 H 0.41 4.41 6.34 -40.82 -0.26 4.15 16 40 H 0.41 7.22 7.94 -40.82 -0.32 6.90 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 43 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 49 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -30.54 384.60 -8.61 -39.15 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.50 Total: 4.52 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.23 Total: -0.42 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.17 Total: -46.62 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.54 -8.61 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323290813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.146 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds