Wall clock time and date at job start Tue Mar 31 2020 09:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00163 * 2 1 3 5 5 C 1.52996 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47328 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47060 * 60.00126 * 6 5 4 8 8 N 1.46497 * 109.47188 * 59.99892 * 7 6 5 9 9 C 1.34780 * 120.00425 * 154.99985 * 8 7 6 10 10 O 1.21351 * 119.99300 * 0.02562 * 9 8 7 11 11 C 1.49443 * 120.00356 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00343 * 359.97438 * 11 9 8 13 13 N 1.34788 * 120.00147 * 179.97438 * 11 9 8 14 14 C 1.46497 * 120.00216 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.46979 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.46559 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00421 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99461 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00351 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47109 * 59.99740 * 20 18 16 22 22 H 1.48501 * 109.47296 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47239 * 299.99673 * 20 18 16 24 24 C 1.53006 * 109.47127 * 300.00449 * 7 6 5 25 25 C 1.52997 * 109.47164 * 59.99836 * 24 7 6 26 26 H 1.08998 * 109.46505 * 300.00129 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99728 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47002 * 240.00426 * 2 1 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 3 2 1 31 31 H 1.09001 * 109.47289 * 60.00046 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47280 * 300.00199 * 4 2 1 34 34 H 1.09004 * 109.47368 * 60.00217 * 5 4 2 35 35 H 1.09001 * 109.47372 * 300.00372 * 5 4 2 36 36 H 1.09002 * 109.47398 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47194 * 300.00476 * 6 5 4 38 38 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 39 39 H 0.97006 * 120.00119 * 335.00459 * 8 7 6 40 40 H 0.96997 * 119.99367 * 0.02562 * 13 11 9 41 41 H 1.08994 * 109.47495 * 300.00507 * 14 13 11 42 42 H 1.09008 * 109.46918 * 60.00328 * 14 13 11 43 43 H 1.09001 * 109.47287 * 300.00094 * 15 14 13 44 44 H 1.08995 * 109.46816 * 60.00456 * 15 14 13 45 45 H 0.96998 * 119.99803 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.47002 * 299.99574 * 24 7 6 47 47 H 1.09000 * 109.47050 * 179.97438 * 24 7 6 48 48 H 1.09002 * 109.47045 * 180.02562 * 25 24 7 49 49 H 1.09001 * 109.47375 * 59.99966 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0801 -1.4436 2.4977 7 6 3.5697 -2.8859 2.4973 8 7 4.0574 -3.5763 1.3008 9 6 4.1858 -4.9180 1.3020 10 8 3.8968 -5.5541 2.2942 11 6 4.6839 -5.6221 0.0816 12 8 4.9724 -4.9860 -0.9107 13 7 4.8127 -6.9638 0.0831 14 6 5.3005 -7.6542 -1.1135 15 6 5.3515 -9.1601 -0.8481 16 6 5.8539 -9.8701 -2.0788 17 1 6.1106 -9.3040 -2.9620 18 6 5.9847 -11.2427 -2.0776 19 7 5.6716 -11.9322 -1.0023 20 14 6.6067 -12.1230 -3.6033 21 1 7.9683 -11.6330 -3.9369 22 1 6.6564 -13.5846 -3.3458 23 1 5.6905 -11.8510 -4.7399 24 6 2.0396 -2.8855 2.4976 25 6 1.5296 -2.1636 1.2487 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 -0.2075 2.1391 34 1 3.9338 0.3058 1.2487 35 1 3.9330 -1.2358 0.3588 36 1 5.1701 -1.4436 2.4977 37 1 3.7171 -0.9300 3.3880 38 1 3.9326 -3.4002 3.3872 39 1 4.2882 -3.0678 0.5076 40 1 4.5817 -7.4723 0.8761 41 1 4.6276 -7.4551 -1.9475 42 1 6.2996 -7.2940 -1.3588 43 1 6.0242 -9.3595 -0.0140 44 1 4.3522 -9.5199 -0.6031 45 1 5.7640 -12.8978 -1.0014 46 1 1.6766 -2.3718 3.3879 47 1 1.6760 -3.9130 2.4969 48 1 0.4396 -2.1629 1.2492 49 1 1.8926 -2.6772 0.3585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323290813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:52 Heat of formation + Delta-G solvation = -134.091178 kcal Electronic energy + Delta-G solvation = -25969.271461 eV Core-core repulsion = 22314.714383 eV Total energy + Delta-G solvation = -3654.557077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91117 -40.48219 -39.25008 -37.01541 -36.51360 -34.87798 -33.68332 -31.90639 -31.70116 -29.97218 -27.96923 -27.42643 -25.43247 -23.78061 -23.35086 -22.87906 -21.69270 -20.83980 -20.18786 -19.64493 -18.58270 -17.74255 -17.16245 -16.84062 -16.55878 -16.49727 -16.11738 -15.77623 -15.23586 -15.09039 -14.97242 -14.67007 -14.50474 -14.30930 -14.19966 -14.09480 -13.36011 -13.28146 -13.12123 -13.02698 -12.93503 -12.77897 -12.57594 -12.55005 -12.28339 -12.22648 -12.03301 -11.99232 -11.69443 -11.66429 -11.46554 -11.27925 -10.97401 -10.80949 -10.67913 -10.61688 -10.24986 -10.16145 -8.23949 -6.35485 0.32731 1.34190 1.43367 1.45182 1.53426 2.12588 2.39611 2.70176 3.10744 3.43490 3.67790 3.71774 3.79942 4.07299 4.13755 4.26816 4.35209 4.37460 4.42625 4.43433 4.58132 4.60615 4.67577 4.70611 4.79422 4.80260 4.87002 4.99775 5.06117 5.06655 5.08108 5.12661 5.15611 5.22373 5.24959 5.30745 5.33801 5.40713 5.41277 5.48855 5.53425 5.59735 5.66991 5.74710 5.95827 6.11912 6.36635 6.71572 6.79172 6.93611 7.34011 8.87861 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.002292 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.777785 B =12215.123556 C =12675.121193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.120 4.120 6 C -0.119 4.119 7 C 0.139 3.861 8 N -0.679 5.679 9 C 0.513 3.487 10 O -0.542 6.542 11 C 0.498 3.502 12 O -0.550 6.550 13 N -0.689 5.689 14 C 0.138 3.862 15 C 0.019 3.981 16 C -0.546 4.546 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 C -0.127 4.127 25 C -0.115 4.115 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.415 0.585 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.266 0.734 46 H 0.094 0.906 47 H 0.044 0.956 48 H 0.069 0.931 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 28.361 7.502 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.092 4.092 5 C -0.157 4.157 6 C -0.156 4.156 7 C 0.035 3.965 8 N -0.333 5.333 9 C 0.293 3.707 10 O -0.420 6.420 11 C 0.278 3.722 12 O -0.429 6.429 13 N -0.340 5.340 14 C 0.015 3.985 15 C -0.019 4.019 16 C -0.584 4.584 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.192 1.192 24 C -0.166 4.166 25 C -0.152 4.152 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.254 0.746 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.208 28.196 7.576 30.328 hybrid contribution 0.240 -1.169 -0.729 1.398 sum -7.969 27.027 6.847 28.998 Atomic orbital electron populations 1.21890 0.95262 1.01602 1.01872 1.21140 0.95810 0.96573 0.97738 1.21874 1.01384 0.95266 1.01849 1.21163 0.94995 0.94569 0.98474 1.21699 0.95311 1.01448 0.97261 1.21819 1.01347 0.92038 1.00418 1.21301 0.94592 0.93858 0.86713 1.45940 1.63915 1.04968 1.18448 1.19956 0.79064 0.84297 0.87336 1.90747 1.50001 1.66568 1.34673 1.20446 0.79590 0.83483 0.88643 1.90709 1.50584 1.66290 1.35286 1.46079 1.63446 1.06305 1.18184 1.21473 0.98452 0.92951 0.85588 1.19170 0.96453 0.89283 0.96944 1.21417 1.44754 0.92575 0.99669 0.91692 1.25937 0.95373 0.98507 0.99641 1.70076 1.49029 1.07523 1.30127 0.85447 0.79216 0.77022 0.79049 1.19151 1.20830 1.19170 1.21902 0.94252 1.00435 0.99980 1.21617 1.00777 0.95749 0.97102 0.92111 0.92921 0.92994 0.92471 0.93044 0.92125 0.92039 0.89876 0.89603 0.92913 0.90742 0.88054 0.90004 0.74632 0.74979 0.92109 0.92023 0.97429 0.97477 0.92551 0.88743 0.93679 0.91251 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.84 71.98 0.64 -1.07 16 2 C -0.09 -1.10 2.50 -10.79 -0.03 -1.12 16 3 C -0.15 -1.40 8.84 71.98 0.64 -0.76 16 4 C -0.07 -0.81 1.78 -10.80 -0.02 -0.83 16 5 C -0.12 -1.27 4.68 30.59 0.14 -1.13 16 6 C -0.12 -1.29 5.61 30.59 0.17 -1.11 16 7 C 0.14 2.37 2.78 44.99 0.13 2.49 16 8 N -0.68 -15.08 4.23 -443.87 -1.88 -16.95 16 9 C 0.51 15.32 7.85 87.27 0.69 16.01 16 10 O -0.54 -18.32 16.14 -3.25 -0.05 -18.37 16 11 C 0.50 17.31 7.89 87.26 0.69 18.00 16 12 O -0.55 -20.75 16.48 -3.25 -0.05 -20.80 16 13 N -0.69 -25.76 5.55 -464.41 -2.58 -28.33 16 14 C 0.14 5.89 5.61 86.38 0.48 6.37 16 15 C 0.02 0.97 5.09 29.85 0.15 1.12 16 16 C -0.55 -30.36 9.11 25.60 0.23 -30.13 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.00 0.23 5.46 84.65 0.46 0.70 16 19 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 20 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 C -0.13 -2.07 5.60 30.60 0.17 -1.90 16 25 C -0.11 -1.72 4.69 30.59 0.14 -1.58 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.66 6.43 -2.39 -0.02 0.64 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.71 6.43 -2.39 -0.02 0.69 16 35 H 0.05 0.69 6.50 -2.39 -0.02 0.67 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 1.60 7.58 -2.39 -0.02 1.59 16 39 H 0.42 8.60 6.34 -92.70 -0.59 8.01 16 40 H 0.41 14.96 7.94 -92.71 -0.74 14.23 16 41 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.00 6.43 -2.39 -0.02 0.98 16 49 H 0.04 0.85 7.60 -2.39 -0.02 0.83 16 Total: -1.00 -65.25 384.60 2.06 -63.20 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.38 Total: 25.52 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 4.69 Total: 5.06 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -4.17 Total: -100.18 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.11 Total: -39.17 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.25 2.06 -63.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323290813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.895 kcal (2) G-P(sol) polarization free energy of solvation -65.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds