Wall clock time and date at job start Tue Mar 31 2020 11:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47240 * 2 1 4 4 C 1.53004 * 109.47174 * 240.00174 * 2 1 3 5 5 C 1.52995 * 109.46801 * 120.00341 * 2 1 3 6 6 H 1.09001 * 110.88922 * 294.79801 * 5 2 1 7 7 C 1.55152 * 111.00798 * 58.68263 * 5 2 1 8 8 C 1.54326 * 102.94541 * 153.61335 * 7 5 2 9 9 N 1.47018 * 107.40330 * 337.72720 * 8 7 5 10 10 C 1.34769 * 125.65073 * 178.97925 * 9 8 7 11 11 O 1.21355 * 119.99984 * 180.02562 * 10 9 8 12 12 C 1.49445 * 120.00236 * 0.02899 * 10 9 8 13 13 O 1.21355 * 119.99780 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00555 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00400 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47112 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46974 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47103 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99679 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47367 * 59.99879 * 22 20 18 24 24 H 1.48504 * 109.46976 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46892 * 299.99757 * 22 20 18 26 26 C 1.47742 * 108.52801 * 359.07069 * 9 8 7 27 27 H 1.09003 * 109.47017 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.47113 * 59.99709 * 1 2 3 29 29 H 1.09004 * 109.47423 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47283 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47764 * 300.00162 * 3 2 1 32 32 H 1.09003 * 109.47198 * 60.00010 * 3 2 1 33 33 H 1.09003 * 109.46873 * 293.51099 * 4 2 1 34 34 H 1.08996 * 109.47030 * 53.50348 * 4 2 1 35 35 H 1.09000 * 109.47126 * 173.50842 * 4 2 1 36 36 H 1.09000 * 110.72329 * 35.24612 * 7 5 2 37 37 H 1.09004 * 110.87119 * 272.04799 * 7 5 2 38 38 H 1.08994 * 109.88251 * 97.22337 * 8 7 5 39 39 H 1.09002 * 109.87889 * 218.23427 * 8 7 5 40 40 H 0.97001 * 120.00061 * 359.97438 * 14 12 10 41 41 H 1.09002 * 109.47089 * 300.00107 * 15 14 12 42 42 H 1.09002 * 109.46708 * 59.99957 * 15 14 12 43 43 H 1.09002 * 109.46906 * 299.99821 * 16 15 14 44 44 H 1.08992 * 109.47225 * 59.99854 * 16 15 14 45 45 H 1.09002 * 109.46897 * 299.99507 * 17 16 15 46 46 H 1.08997 * 109.47435 * 59.99222 * 17 16 15 47 47 H 0.97005 * 120.00075 * 180.02562 * 21 20 18 48 48 H 1.09004 * 110.29074 * 265.16529 * 26 9 8 49 49 H 1.09007 * 110.47124 * 142.93826 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.7667 -0.1752 2.1521 7 6 1.5155 -2.1806 1.3019 8 6 2.5929 -2.9053 2.1359 9 7 3.8271 -2.1116 2.0447 10 6 4.9942 -2.4015 2.6532 11 8 5.9525 -1.6714 2.5070 12 6 5.1083 -3.6221 3.5079 13 8 4.1499 -4.3519 3.6545 14 7 6.2755 -3.9123 4.1160 15 6 6.3871 -5.1086 4.9544 16 6 7.8049 -5.2033 5.5217 17 6 7.9217 -6.4529 6.3967 18 6 9.3183 -6.5466 6.9550 19 1 10.0496 -5.7906 6.7098 20 6 9.6625 -7.5973 7.7787 21 7 8.7718 -8.5175 8.0776 22 14 11.3935 -7.7130 8.4713 23 1 11.6812 -6.5071 9.2888 24 1 11.5068 -8.9260 9.3205 25 1 12.3687 -7.7982 7.3546 26 6 3.5713 -0.9437 1.1768 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7746 -1.7770 -1.1931 34 1 1.5849 -0.2789 -2.1354 35 1 3.1238 -0.6217 -1.3093 36 1 1.4537 -2.6046 0.2996 37 1 0.5466 -2.2273 1.7992 38 1 2.2726 -2.9745 3.1754 39 1 2.7637 -3.9038 1.7335 40 1 7.0417 -3.3292 3.9986 41 1 5.6716 -5.0458 5.7743 42 1 6.1755 -5.9937 4.3544 43 1 8.5207 -5.2659 4.7020 44 1 8.0161 -4.3182 6.1216 45 1 7.2058 -6.3907 7.2164 46 1 7.7106 -7.3379 5.7964 47 1 9.0138 -9.2566 8.6575 48 1 3.8752 -1.1601 0.1526 49 1 4.1000 -0.0672 1.5514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326455196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:18 Heat of formation + Delta-G solvation = -94.149290 kcal Electronic energy + Delta-G solvation = -25609.350410 eV Core-core repulsion = 21956.525343 eV Total energy + Delta-G solvation = -3652.825067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.94549 -39.58564 -38.15563 -36.28062 -35.39850 -33.33089 -31.26230 -31.17718 -29.43225 -27.79534 -27.49747 -27.22654 -25.25159 -23.38665 -22.21134 -21.81306 -20.74345 -19.56865 -18.84188 -17.73075 -17.08911 -16.59474 -16.37046 -15.78963 -15.40223 -14.98651 -14.76539 -14.51255 -14.45474 -14.23923 -14.12540 -13.88233 -13.54054 -13.16439 -13.00699 -12.56924 -12.49370 -12.30084 -12.10459 -12.05215 -11.87988 -11.79532 -11.72615 -11.53541 -11.48679 -10.89150 -10.87772 -10.81458 -10.75129 -10.72636 -10.62769 -9.89337 -9.71952 -9.33511 -9.13580 -9.03781 -8.86109 -8.37445 -6.02332 -4.05385 1.46176 2.25830 3.24838 3.32756 3.37195 3.39403 3.49270 4.01527 4.13149 4.23541 4.43475 4.48522 4.57117 4.67651 4.76077 4.91827 5.00312 5.11905 5.20333 5.23370 5.32662 5.33491 5.35073 5.43373 5.52821 5.56198 5.60571 5.61318 5.64430 5.65097 5.69952 5.75552 5.79179 5.89776 5.96121 6.05269 6.08711 6.29749 6.54789 6.71889 6.95671 7.00970 7.33223 7.61720 7.72882 7.73673 7.95897 8.08930 8.37261 9.00832 9.58851 11.08864 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.001953 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.358839 B =14332.013022 C =14735.214698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.151 4.151 5 C -0.091 4.091 6 H 0.087 0.913 7 C -0.134 4.134 8 C 0.107 3.893 9 N -0.594 5.594 10 C 0.521 3.479 11 O -0.524 6.524 12 C 0.502 3.498 13 O -0.522 6.522 14 N -0.692 5.692 15 C 0.115 3.885 16 C -0.123 4.123 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.104 3.896 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.411 0.589 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.262 0.738 48 H 0.079 0.921 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.311 18.204 -18.478 31.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 C -0.202 4.202 4 C -0.208 4.208 5 C -0.110 4.110 6 H 0.105 0.895 7 C -0.171 4.171 8 C -0.016 4.016 9 N -0.329 5.329 10 C 0.304 3.696 11 O -0.400 6.400 12 C 0.282 3.718 13 O -0.399 6.399 14 N -0.344 5.344 15 C -0.007 4.007 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.017 4.017 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.246 0.754 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.414 17.851 -18.283 31.496 hybrid contribution 1.306 0.078 0.438 1.380 sum -17.109 17.929 -17.845 30.538 Atomic orbital electron populations 1.21879 0.94031 1.02101 1.01841 1.20422 0.95880 0.95344 0.94105 1.21918 1.01289 0.95057 1.01936 1.22075 1.01306 1.00644 0.96764 1.22432 0.93724 0.96075 0.98810 0.89487 1.22906 0.98476 0.94634 1.01111 1.22195 0.82814 0.95008 1.01559 1.48307 1.10939 1.26268 1.47337 1.20055 0.82162 0.86541 0.80826 1.90759 1.36567 1.50645 1.62052 1.19907 0.84295 0.85974 0.81628 1.90742 1.37107 1.50242 1.61783 1.46059 1.12700 1.27919 1.47735 1.21830 1.00209 0.85300 0.93360 1.21929 0.92129 1.02109 0.99923 1.19027 0.97295 0.90888 0.94074 1.21166 0.96841 1.08893 1.29261 0.92621 1.25025 0.97309 0.95724 0.96393 1.69953 1.34002 1.12648 1.36698 0.86628 0.84751 0.77404 0.79031 1.20229 1.21273 1.20235 1.22605 0.95795 0.88548 0.94773 0.92558 0.92554 0.92256 0.92389 0.92456 0.92499 0.92009 0.92449 0.92155 0.89968 0.89732 0.90232 0.90293 0.75364 0.91146 0.91137 0.92438 0.92435 0.96204 0.96206 0.92868 0.90253 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.23 37.16 0.31 -0.33 16 2 C -0.06 -0.29 0.60 -154.51 -0.09 -0.38 16 3 C -0.14 -0.73 8.35 37.15 0.31 -0.42 16 4 C -0.15 -0.77 7.68 37.16 0.29 -0.49 16 5 C -0.09 -0.59 2.39 -88.47 -0.21 -0.80 16 6 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 7 C -0.13 -0.86 5.12 -24.90 -0.13 -0.98 16 8 C 0.11 1.04 5.48 -3.07 -0.02 1.02 16 9 N -0.59 -6.84 3.34 -170.77 -0.57 -7.41 16 10 C 0.52 7.49 7.92 -11.59 -0.09 7.40 16 11 O -0.52 -8.46 16.76 5.49 0.09 -8.37 16 12 C 0.50 7.83 7.86 -11.59 -0.09 7.74 16 13 O -0.52 -8.88 14.12 5.49 0.08 -8.80 16 14 N -0.69 -10.75 5.55 -60.73 -0.34 -11.09 16 15 C 0.11 2.00 5.67 -4.04 -0.02 1.98 16 16 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 17 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 22 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.10 0.92 5.56 -2.35 -0.01 0.91 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.26 7.24 -51.93 -0.38 -0.12 16 30 H 0.06 0.32 7.57 -51.93 -0.39 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.32 5.99 -51.93 -0.31 0.01 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.34 6.36 -51.93 -0.33 0.01 16 36 H 0.08 0.47 5.90 -51.93 -0.31 0.16 16 37 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 38 H 0.08 0.85 7.58 -51.93 -0.39 0.46 16 39 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 40 H 0.41 5.89 7.94 -40.82 -0.32 5.56 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.08 0.66 5.61 -51.93 -0.29 0.37 16 49 H 0.08 0.76 8.01 -51.92 -0.42 0.35 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -31.78 385.34 -8.25 -40.03 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.58 Total: -0.87 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.46 Total: 0.15 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.17 Total: -44.50 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.17 Total: -17.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.78 -8.25 -40.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326455196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.121 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds