Wall clock time and date at job start Tue Mar 31 2020 11:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47240 * 2 1 4 4 C 1.53004 * 109.47174 * 240.00174 * 2 1 3 5 5 C 1.52995 * 109.46801 * 120.00341 * 2 1 3 6 6 H 1.09001 * 110.88922 * 294.79801 * 5 2 1 7 7 C 1.55152 * 111.00798 * 58.68263 * 5 2 1 8 8 C 1.54326 * 102.94541 * 153.61335 * 7 5 2 9 9 N 1.47018 * 107.40330 * 337.72720 * 8 7 5 10 10 C 1.34769 * 125.65073 * 178.97925 * 9 8 7 11 11 O 1.21355 * 119.99984 * 180.02562 * 10 9 8 12 12 C 1.49445 * 120.00236 * 0.02899 * 10 9 8 13 13 O 1.21355 * 119.99780 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00555 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00400 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47112 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46974 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47103 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99679 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47367 * 59.99879 * 22 20 18 24 24 H 1.48504 * 109.46976 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46892 * 299.99757 * 22 20 18 26 26 C 1.47742 * 108.52801 * 359.07069 * 9 8 7 27 27 H 1.09003 * 109.47017 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.47113 * 59.99709 * 1 2 3 29 29 H 1.09004 * 109.47423 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47283 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47764 * 300.00162 * 3 2 1 32 32 H 1.09003 * 109.47198 * 60.00010 * 3 2 1 33 33 H 1.09003 * 109.46873 * 293.51099 * 4 2 1 34 34 H 1.08996 * 109.47030 * 53.50348 * 4 2 1 35 35 H 1.09000 * 109.47126 * 173.50842 * 4 2 1 36 36 H 1.09000 * 110.72329 * 35.24612 * 7 5 2 37 37 H 1.09004 * 110.87119 * 272.04799 * 7 5 2 38 38 H 1.08994 * 109.88251 * 97.22337 * 8 7 5 39 39 H 1.09002 * 109.87889 * 218.23427 * 8 7 5 40 40 H 0.97001 * 120.00061 * 359.97438 * 14 12 10 41 41 H 1.09002 * 109.47089 * 300.00107 * 15 14 12 42 42 H 1.09002 * 109.46708 * 59.99957 * 15 14 12 43 43 H 1.09002 * 109.46906 * 299.99821 * 16 15 14 44 44 H 1.08992 * 109.47225 * 59.99854 * 16 15 14 45 45 H 1.09002 * 109.46897 * 299.99507 * 17 16 15 46 46 H 1.08997 * 109.47435 * 59.99222 * 17 16 15 47 47 H 0.97005 * 120.00075 * 180.02562 * 21 20 18 48 48 H 1.09004 * 110.29074 * 265.16529 * 26 9 8 49 49 H 1.09007 * 110.47124 * 142.93826 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.7667 -0.1752 2.1521 7 6 1.5155 -2.1806 1.3019 8 6 2.5929 -2.9053 2.1359 9 7 3.8271 -2.1116 2.0447 10 6 4.9942 -2.4015 2.6532 11 8 5.9525 -1.6714 2.5070 12 6 5.1083 -3.6221 3.5079 13 8 4.1499 -4.3519 3.6545 14 7 6.2755 -3.9123 4.1160 15 6 6.3871 -5.1086 4.9544 16 6 7.8049 -5.2033 5.5217 17 6 7.9217 -6.4529 6.3967 18 6 9.3183 -6.5466 6.9550 19 1 10.0496 -5.7906 6.7098 20 6 9.6625 -7.5973 7.7787 21 7 8.7718 -8.5175 8.0776 22 14 11.3935 -7.7130 8.4713 23 1 11.6812 -6.5071 9.2888 24 1 11.5068 -8.9260 9.3205 25 1 12.3687 -7.7982 7.3546 26 6 3.5713 -0.9437 1.1768 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7746 -1.7770 -1.1931 34 1 1.5849 -0.2789 -2.1354 35 1 3.1238 -0.6217 -1.3093 36 1 1.4537 -2.6046 0.2996 37 1 0.5466 -2.2273 1.7992 38 1 2.2726 -2.9745 3.1754 39 1 2.7637 -3.9038 1.7335 40 1 7.0417 -3.3292 3.9986 41 1 5.6716 -5.0458 5.7743 42 1 6.1755 -5.9937 4.3544 43 1 8.5207 -5.2659 4.7020 44 1 8.0161 -4.3182 6.1216 45 1 7.2058 -6.3907 7.2164 46 1 7.7106 -7.3379 5.7964 47 1 9.0138 -9.2566 8.6575 48 1 3.8752 -1.1601 0.1526 49 1 4.1000 -0.0672 1.5514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326455196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:17 Heat of formation + Delta-G solvation = -113.835395 kcal Electronic energy + Delta-G solvation = -25610.204064 eV Core-core repulsion = 21956.525343 eV Total energy + Delta-G solvation = -3653.678721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96941 -40.48015 -39.25073 -37.33470 -36.62522 -35.21634 -33.06308 -31.96626 -30.13246 -28.95081 -28.18583 -27.92277 -26.53341 -24.88732 -23.04683 -22.80403 -22.38145 -20.78848 -19.42820 -18.79236 -18.44847 -18.11604 -17.55550 -16.90544 -16.72092 -16.41019 -16.07176 -15.54376 -15.32988 -15.07102 -14.97212 -14.73942 -14.34029 -14.29503 -14.08714 -13.79380 -13.78216 -13.52406 -13.06103 -12.95650 -12.83016 -12.73653 -12.58161 -12.54771 -12.44785 -12.43584 -12.18348 -11.99507 -11.70951 -11.55900 -11.37557 -11.30063 -11.25419 -11.21669 -10.66203 -10.54767 -10.33792 -9.85737 -8.19767 -6.30831 0.26432 1.16716 1.41645 1.44292 1.52202 2.04571 2.37922 2.44318 3.13884 3.21492 3.51288 3.53181 3.73396 4.06544 4.08574 4.14631 4.16323 4.24441 4.35830 4.36723 4.50737 4.56717 4.68920 4.76827 4.82000 4.85722 4.89909 4.90882 4.92393 4.96259 5.03640 5.08835 5.13399 5.14849 5.17291 5.19786 5.22563 5.30304 5.44051 5.50477 5.55192 5.60111 5.69593 5.83515 5.93820 6.16017 6.23168 6.57808 6.85432 6.86447 7.38379 8.91843 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.001953 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.358839 B =14332.013022 C =14735.214698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.152 4.152 5 C -0.082 4.082 6 H 0.087 0.913 7 C -0.123 4.123 8 C 0.102 3.898 9 N -0.588 5.588 10 C 0.520 3.480 11 O -0.547 6.547 12 C 0.502 3.498 13 O -0.538 6.538 14 N -0.688 5.688 15 C 0.129 3.871 16 C -0.106 4.106 17 C 0.026 3.974 18 C -0.544 4.544 19 H 0.064 0.936 20 C -0.002 4.002 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.267 1.267 26 C 0.099 3.901 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.418 0.582 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.066 0.934 45 H -0.003 1.003 46 H -0.003 1.003 47 H 0.264 0.736 48 H 0.088 0.912 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.653 19.542 -19.527 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.203 4.203 4 C -0.209 4.209 5 C -0.101 4.101 6 H 0.106 0.894 7 C -0.160 4.160 8 C -0.020 4.020 9 N -0.321 5.321 10 C 0.303 3.697 11 O -0.426 6.426 12 C 0.283 3.717 13 O -0.416 6.416 14 N -0.340 5.340 15 C 0.006 3.994 16 C -0.144 4.144 17 C -0.012 4.012 18 C -0.582 4.582 19 H 0.082 0.918 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.192 1.192 26 C -0.021 4.021 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.255 0.745 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.072 0.928 48 H 0.106 0.894 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.783 19.217 -19.360 33.119 hybrid contribution 1.335 -0.333 0.729 1.557 sum -17.448 18.884 -18.631 31.752 Atomic orbital electron populations 1.21868 0.93125 1.02527 1.02191 1.20389 0.96475 0.95085 0.93260 1.21925 1.00884 0.95132 1.02319 1.22082 1.00934 1.00808 0.97027 1.22411 0.91708 0.96301 0.99695 0.89439 1.22906 0.97897 0.93914 1.01285 1.22325 0.83010 0.95017 1.01673 1.48464 1.10486 1.26926 1.46251 1.19742 0.82907 0.85949 0.81143 1.90745 1.37477 1.51169 1.63179 1.20185 0.83826 0.86279 0.81432 1.90733 1.37597 1.50915 1.62344 1.45881 1.13250 1.27386 1.47487 1.21470 0.98569 0.85992 0.93322 1.21644 0.93763 0.99631 0.99367 1.18926 0.95799 0.92624 0.93867 1.21646 0.98068 1.09128 1.29346 0.91814 1.25985 1.01788 0.95360 0.96812 1.70091 1.36288 1.13347 1.37508 0.85491 0.79372 0.77641 0.78473 1.19184 1.20990 1.19191 1.22839 0.97637 0.87193 0.94463 0.92450 0.92034 0.91793 0.93054 0.91792 0.92443 0.91826 0.91717 0.92808 0.88746 0.87945 0.91250 0.91157 0.74490 0.91725 0.91705 0.91514 0.91516 0.98502 0.98497 0.92770 0.89432 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.23 71.98 0.59 -0.30 16 2 C -0.05 -0.42 0.60 -52.18 -0.03 -0.45 16 3 C -0.15 -1.23 8.35 71.98 0.60 -0.63 16 4 C -0.15 -1.23 7.68 71.98 0.55 -0.68 16 5 C -0.08 -0.91 2.39 -9.40 -0.02 -0.93 16 6 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 7 C -0.12 -1.32 5.12 31.78 0.16 -1.15 16 8 C 0.10 1.90 5.48 86.73 0.48 2.38 16 9 N -0.59 -13.19 3.34 -812.56 -2.71 -15.90 16 10 C 0.52 14.82 7.92 87.27 0.69 15.51 16 11 O -0.55 -17.54 16.76 -3.26 -0.05 -17.59 16 12 C 0.50 15.62 7.86 87.27 0.69 16.31 16 13 O -0.54 -18.36 14.12 -3.26 -0.05 -18.40 16 14 N -0.69 -21.14 5.55 -464.40 -2.58 -23.72 16 15 C 0.13 4.52 5.67 86.38 0.49 5.01 16 16 C -0.11 -4.16 5.27 30.59 0.16 -4.00 16 17 C 0.03 1.32 4.97 29.85 0.15 1.47 16 18 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 19 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 20 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 21 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 22 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C 0.10 1.65 5.56 86.79 0.48 2.13 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.06 0.36 7.24 -2.39 -0.02 0.34 16 30 H 0.05 0.50 7.57 -2.38 -0.02 0.48 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.50 5.99 -2.39 -0.01 0.49 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.51 6.36 -2.39 -0.02 0.50 16 36 H 0.09 0.83 5.90 -2.39 -0.01 0.82 16 37 H 0.10 0.80 8.11 -2.38 -0.02 0.78 16 38 H 0.07 1.46 7.58 -2.39 -0.02 1.44 16 39 H 0.07 1.45 7.69 -2.39 -0.02 1.44 16 40 H 0.42 11.71 7.94 -92.71 -0.74 10.97 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 48 H 0.09 1.35 5.61 -2.39 -0.01 1.33 16 49 H 0.07 1.35 8.01 -2.38 -0.02 1.33 16 Total: -1.00 -68.15 385.34 2.80 -65.35 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.19 Total: 15.77 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.68 Total: 4.74 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -5.00 Total: -95.98 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.10 Total: -36.00 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.15 2.80 -65.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326455196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.484 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds