Wall clock time and date at job start Tue Mar 31 2020 11:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 C 1.52998 * 109.47356 * 240.00374 * 2 1 3 5 5 C 1.50700 * 109.47033 * 59.99216 * 4 2 1 6 6 H 1.07997 * 120.00103 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00083 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99751 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00251 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46746 * 60.00731 * 9 7 5 11 11 H 1.48501 * 109.47228 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47505 * 300.00478 * 9 7 5 13 13 C 1.53004 * 109.47483 * 119.99948 * 2 1 3 14 14 N 1.46495 * 109.46995 * 299.99895 * 13 2 1 15 15 C 1.34777 * 119.99929 * 179.97438 * 14 13 2 16 16 O 1.21586 * 120.00012 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00182 * 180.02562 * 15 14 13 18 18 C 1.49005 * 125.23456 * 180.60756 * 17 15 14 19 19 C 1.54356 * 104.58306 * 156.51994 * 18 17 15 20 20 H 1.09003 * 113.04989 * 272.72248 * 19 18 17 21 21 C 1.53713 * 109.62400 * 145.71419 * 19 18 17 22 22 H 1.08996 * 109.92309 * 152.82700 * 21 19 18 23 23 O 1.42899 * 110.09113 * 31.60845 * 21 19 18 24 24 C 1.53868 * 107.02634 * 272.17335 * 21 19 18 25 25 C 1.54137 * 106.49614 * 1.69419 * 24 21 19 26 26 C 1.54844 * 104.73175 * 335.43890 * 25 24 21 27 27 H 1.08992 * 113.73926 * 273.77884 * 26 25 24 28 28 C 1.46907 * 125.61772 * 359.97438 * 17 15 14 29 29 H 1.09005 * 109.46816 * 299.99615 * 1 2 3 30 30 H 1.08997 * 109.47468 * 59.99958 * 1 2 3 31 31 H 1.09007 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47737 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47205 * 299.99975 * 3 2 1 34 34 H 1.09000 * 109.47428 * 60.00384 * 3 2 1 35 35 H 1.08993 * 109.47382 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47021 * 299.99711 * 4 2 1 37 37 H 0.97003 * 120.00014 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.46782 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.46881 * 60.00297 * 13 2 1 40 40 H 0.97001 * 120.00233 * 0.02562 * 14 13 2 41 41 H 1.09002 * 111.12461 * 37.52156 * 18 17 15 42 42 H 1.08999 * 110.06076 * 274.98563 * 18 17 15 43 43 H 0.96693 * 114.00315 * 180.88711 * 23 21 19 44 44 H 1.08997 * 110.05273 * 242.43560 * 24 21 19 45 45 H 1.08993 * 110.05166 * 120.94999 * 24 21 19 46 46 H 1.09002 * 110.40594 * 94.28777 * 25 24 21 47 47 H 1.08998 * 110.40502 * 216.59383 * 25 24 21 48 48 H 1.09000 * 109.81971 * 62.02690 * 28 17 15 49 49 H 1.09001 * 109.82246 * 301.08159 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3805 7 6 1.8711 -0.4814 -3.7320 8 7 2.6273 -1.5506 -3.8527 9 14 1.2489 0.3995 -5.2572 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3005 -6.4697 12 1 -0.2361 0.3995 -5.2577 13 6 2.0401 -0.7212 1.2493 14 7 1.5518 -0.0306 2.4454 15 6 1.8771 -0.4914 3.6695 16 8 2.5761 -1.4799 3.7810 17 7 1.4275 0.1437 4.7700 18 6 1.7248 -0.2553 6.1745 19 6 1.5326 1.0380 6.9949 20 1 2.4330 1.6504 7.0433 21 6 0.9682 0.6905 8.3817 22 1 1.2659 1.4498 9.1048 23 8 1.4436 -0.5911 8.7982 24 6 -0.5647 0.6638 8.2506 25 6 -0.8825 0.9551 6.7707 26 6 0.3470 1.7399 6.2511 27 1 0.2875 2.8142 6.4253 28 6 0.5797 1.3434 4.7791 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7208 -1.2495 36 1 1.6768 -1.7488 -1.2493 37 1 2.8617 -1.8820 -4.7337 38 1 3.1301 -0.7208 1.2494 39 1 1.6768 -1.7489 1.2492 40 1 0.9938 0.7578 2.3564 41 1 2.7486 -0.6163 6.2720 42 1 1.0206 -1.0197 6.5030 43 1 1.1109 -0.8727 9.6613 44 1 -1.0076 1.4307 8.8859 45 1 -0.9464 -0.3186 8.5284 46 1 -1.0007 0.0237 6.2169 47 1 -1.7838 1.5624 6.6880 48 1 -0.3747 1.1252 4.2998 49 1 1.0820 2.1550 4.2526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365641069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:17 Heat of formation + Delta-G solvation = -94.126754 kcal Electronic energy + Delta-G solvation = -26703.482796 eV Core-core repulsion = 23050.658706 eV Total energy + Delta-G solvation = -3652.824090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84879 -39.19820 -37.17775 -36.42652 -34.00338 -33.42611 -32.01421 -30.10958 -29.47682 -27.08916 -26.47589 -26.44560 -25.63359 -23.73844 -22.49996 -21.08141 -19.90572 -19.75595 -18.60301 -17.56832 -17.30493 -16.68942 -16.26762 -15.79088 -15.44281 -15.10092 -14.50753 -14.23735 -14.07000 -13.70945 -13.59301 -13.30918 -13.11807 -12.93909 -12.72774 -12.70861 -12.51575 -12.12351 -12.02983 -11.95064 -11.33828 -11.12158 -11.10099 -11.03747 -10.97533 -10.84955 -10.81067 -10.59828 -10.35430 -10.29931 -10.23490 -9.91628 -9.83437 -9.16454 -8.90328 -8.80740 -8.34255 -8.32809 -5.97102 -3.98392 2.75731 3.33513 3.38941 3.40032 3.47096 3.63704 3.87247 4.12106 4.22195 4.46078 4.48395 4.71993 4.73484 4.86484 4.90570 5.01777 5.12628 5.20283 5.36617 5.38181 5.42277 5.51165 5.54458 5.58176 5.68966 5.73533 5.79271 5.86766 5.88457 5.99991 6.15547 6.21762 6.29258 6.36898 6.46279 6.65254 6.66174 6.87159 7.10164 7.11024 7.16688 7.22917 7.27122 7.67685 7.80646 8.01648 8.22450 8.43608 8.86910 9.06203 9.64338 11.14352 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.002543 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.863902 B =11007.040257 C =11430.341315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.146 3.854 14 N -0.735 5.735 15 C 0.717 3.283 16 O -0.591 6.591 17 N -0.645 5.645 18 C 0.149 3.851 19 C -0.099 4.099 20 H 0.097 0.903 21 C 0.110 3.890 22 H 0.061 0.939 23 O -0.561 6.561 24 C -0.157 4.157 25 C -0.118 4.118 26 C -0.097 4.097 27 H 0.108 0.892 28 C 0.107 3.893 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.393 0.607 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.378 0.622 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 9.000 26.161 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.023 3.977 14 N -0.391 5.391 15 C 0.419 3.581 16 O -0.469 6.469 17 N -0.385 5.385 18 C 0.027 3.973 19 C -0.118 4.118 20 H 0.115 0.885 21 C 0.051 3.949 22 H 0.079 0.921 23 O -0.367 6.367 24 C -0.195 4.195 25 C -0.156 4.156 26 C -0.116 4.116 27 H 0.126 0.874 28 C -0.016 4.016 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.225 0.775 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.564 8.102 25.417 27.472 hybrid contribution -0.920 0.863 -0.426 1.332 sum -7.484 8.965 24.990 27.584 Atomic orbital electron populations 1.21745 0.95351 1.01124 1.00034 1.20908 0.95426 0.95848 0.95062 1.21746 1.00549 0.95932 1.00037 1.19086 0.96399 0.95248 0.89398 1.21145 1.31195 1.12050 0.90532 0.92341 1.25016 0.95343 0.95100 0.99055 1.69959 1.36891 1.23016 1.23517 0.86710 0.79111 0.79754 0.82703 1.20352 1.21415 1.20358 1.21491 0.98662 0.95652 0.81895 1.45385 1.56148 1.33139 1.04399 1.15546 0.80233 0.82552 0.79788 1.90918 1.43032 1.27467 1.85502 1.48011 1.54510 1.30463 1.05517 1.21962 1.02278 0.95326 0.77745 1.23057 0.98573 0.97245 0.92964 0.88488 1.22247 0.92208 0.85313 0.95180 0.92132 1.86588 1.74025 1.35384 1.40678 1.22905 0.96289 1.02601 0.97687 1.22428 0.97341 1.00510 0.95303 1.23190 0.94767 1.00041 0.93617 0.87412 1.21858 0.94930 0.88045 0.96801 0.95431 0.91497 0.93374 0.93367 0.91504 0.95419 0.96291 0.96293 0.92994 0.92045 0.92049 0.77224 0.90350 0.90919 0.77513 0.91145 0.90655 0.90758 0.91108 0.91405 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.15 2.76 4.56 -4.04 -0.02 2.75 16 14 N -0.74 -11.83 4.92 -65.23 -0.32 -12.15 16 15 C 0.72 12.40 8.49 -86.92 -0.74 11.66 16 16 O -0.59 -12.79 16.62 5.29 0.09 -12.70 16 17 N -0.64 -8.48 3.36 -175.44 -0.59 -9.07 16 18 C 0.15 1.78 5.20 -1.94 -0.01 1.77 16 19 C -0.10 -0.81 3.99 -87.61 -0.35 -1.16 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 21 C 0.11 0.70 3.93 -25.91 -0.10 0.60 16 22 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 23 O -0.56 -4.19 11.77 -35.23 -0.41 -4.61 16 24 C -0.16 -0.84 6.60 -25.69 -0.17 -1.01 16 25 C -0.12 -0.76 5.59 -25.17 -0.14 -0.90 16 26 C -0.10 -0.65 4.26 -87.09 -0.37 -1.03 16 27 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 28 C 0.11 0.98 5.38 -3.19 -0.02 0.97 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 31 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.39 5.40 5.14 -40.82 -0.21 5.19 16 41 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 42 H 0.07 0.91 6.97 -51.93 -0.36 0.55 16 43 H 0.38 1.22 9.10 45.56 0.41 1.64 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.41 7.95 -51.93 -0.41 0.00 16 46 H 0.07 0.62 7.35 -51.93 -0.38 0.24 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.59 7.83 -51.93 -0.41 0.19 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -33.62 373.66 -9.45 -43.07 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.68 Total: 2.88 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.87 Total: -3.43 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.17 Total: -47.16 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.33 Total: -17.30 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.62 -9.45 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365641069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.059 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds