Wall clock time and date at job start Tue Mar 31 2020 11:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 C 1.52998 * 109.47356 * 240.00374 * 2 1 3 5 5 C 1.50700 * 109.47033 * 59.99216 * 4 2 1 6 6 H 1.07997 * 120.00103 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00083 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99751 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00251 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46746 * 60.00731 * 9 7 5 11 11 H 1.48501 * 109.47228 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47505 * 300.00478 * 9 7 5 13 13 C 1.53004 * 109.47483 * 119.99948 * 2 1 3 14 14 N 1.46495 * 109.46995 * 299.99895 * 13 2 1 15 15 C 1.34777 * 119.99929 * 179.97438 * 14 13 2 16 16 O 1.21586 * 120.00012 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00182 * 180.02562 * 15 14 13 18 18 C 1.49005 * 125.23456 * 180.60756 * 17 15 14 19 19 C 1.54356 * 104.58306 * 156.51994 * 18 17 15 20 20 H 1.09003 * 113.04989 * 272.72248 * 19 18 17 21 21 C 1.53713 * 109.62400 * 145.71419 * 19 18 17 22 22 H 1.08996 * 109.92309 * 152.82700 * 21 19 18 23 23 O 1.42899 * 110.09113 * 31.60845 * 21 19 18 24 24 C 1.53868 * 107.02634 * 272.17335 * 21 19 18 25 25 C 1.54137 * 106.49614 * 1.69419 * 24 21 19 26 26 C 1.54844 * 104.73175 * 335.43890 * 25 24 21 27 27 H 1.08992 * 113.73926 * 273.77884 * 26 25 24 28 28 C 1.46907 * 125.61772 * 359.97438 * 17 15 14 29 29 H 1.09005 * 109.46816 * 299.99615 * 1 2 3 30 30 H 1.08997 * 109.47468 * 59.99958 * 1 2 3 31 31 H 1.09007 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47737 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47205 * 299.99975 * 3 2 1 34 34 H 1.09000 * 109.47428 * 60.00384 * 3 2 1 35 35 H 1.08993 * 109.47382 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47021 * 299.99711 * 4 2 1 37 37 H 0.97003 * 120.00014 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.46782 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.46881 * 60.00297 * 13 2 1 40 40 H 0.97001 * 120.00233 * 0.02562 * 14 13 2 41 41 H 1.09002 * 111.12461 * 37.52156 * 18 17 15 42 42 H 1.08999 * 110.06076 * 274.98563 * 18 17 15 43 43 H 0.96693 * 114.00315 * 180.88711 * 23 21 19 44 44 H 1.08997 * 110.05273 * 242.43560 * 24 21 19 45 45 H 1.08993 * 110.05166 * 120.94999 * 24 21 19 46 46 H 1.09002 * 110.40594 * 94.28777 * 25 24 21 47 47 H 1.08998 * 110.40502 * 216.59383 * 25 24 21 48 48 H 1.09000 * 109.81971 * 62.02690 * 28 17 15 49 49 H 1.09001 * 109.82246 * 301.08159 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3805 7 6 1.8711 -0.4814 -3.7320 8 7 2.6273 -1.5506 -3.8527 9 14 1.2489 0.3995 -5.2572 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3005 -6.4697 12 1 -0.2361 0.3995 -5.2577 13 6 2.0401 -0.7212 1.2493 14 7 1.5518 -0.0306 2.4454 15 6 1.8771 -0.4914 3.6695 16 8 2.5761 -1.4799 3.7810 17 7 1.4275 0.1437 4.7700 18 6 1.7248 -0.2553 6.1745 19 6 1.5326 1.0380 6.9949 20 1 2.4330 1.6504 7.0433 21 6 0.9682 0.6905 8.3817 22 1 1.2659 1.4498 9.1048 23 8 1.4436 -0.5911 8.7982 24 6 -0.5647 0.6638 8.2506 25 6 -0.8825 0.9551 6.7707 26 6 0.3470 1.7399 6.2511 27 1 0.2875 2.8142 6.4253 28 6 0.5797 1.3434 4.7791 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7208 -1.2495 36 1 1.6768 -1.7488 -1.2493 37 1 2.8617 -1.8820 -4.7337 38 1 3.1301 -0.7208 1.2494 39 1 1.6768 -1.7489 1.2492 40 1 0.9938 0.7578 2.3564 41 1 2.7486 -0.6163 6.2720 42 1 1.0206 -1.0197 6.5030 43 1 1.1109 -0.8727 9.6613 44 1 -1.0076 1.4307 8.8859 45 1 -0.9464 -0.3186 8.5284 46 1 -1.0007 0.0237 6.2169 47 1 -1.7838 1.5624 6.6880 48 1 -0.3747 1.1252 4.2998 49 1 1.0820 2.1550 4.2526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365641069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:16 Heat of formation + Delta-G solvation = -117.957734 kcal Electronic energy + Delta-G solvation = -26704.516185 eV Core-core repulsion = 23050.658706 eV Total energy + Delta-G solvation = -3653.857479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74507 -40.34233 -38.67805 -37.23205 -35.28271 -34.75822 -33.81141 -30.86953 -30.23877 -29.03726 -27.96714 -27.65643 -26.58911 -25.11018 -24.05026 -21.57964 -21.09006 -20.54699 -20.01528 -18.83923 -18.34915 -17.87405 -17.43737 -17.07066 -16.56770 -16.45166 -15.91045 -15.46329 -15.41679 -14.85924 -14.60522 -14.38276 -14.31479 -14.05881 -13.98591 -13.92232 -13.68581 -13.48231 -13.16406 -12.83664 -12.74723 -12.61921 -12.57110 -12.33002 -12.22094 -12.01223 -11.95578 -11.70117 -11.65561 -11.54092 -11.42617 -11.23025 -10.97566 -10.86217 -10.76267 -10.49720 -10.23207 -9.49171 -8.12642 -6.20862 1.43224 1.45855 1.52784 1.56815 2.10478 2.45294 2.99548 3.18929 3.21577 3.29638 3.61820 3.90035 3.97225 4.08093 4.18968 4.21572 4.23478 4.23689 4.27560 4.48758 4.54116 4.62567 4.68548 4.71585 4.72137 4.75806 4.88445 4.90928 4.95634 5.04852 5.09961 5.11906 5.12405 5.17311 5.25232 5.35446 5.38929 5.43772 5.48136 5.49822 5.53114 5.58655 5.80389 5.90349 6.03037 6.31235 6.93281 6.96528 6.99803 7.46731 7.52783 8.99892 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.002543 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.863902 B =11007.040257 C =11430.341315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.119 4.119 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.161 3.839 14 N -0.720 5.720 15 C 0.710 3.290 16 O -0.644 6.644 17 N -0.640 5.640 18 C 0.147 3.853 19 C -0.098 4.098 20 H 0.102 0.898 21 C 0.110 3.890 22 H 0.083 0.917 23 O -0.587 6.587 24 C -0.151 4.151 25 C -0.120 4.120 26 C -0.082 4.082 27 H 0.142 0.858 28 C 0.095 3.905 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.067 0.933 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.259 0.741 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.408 0.592 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.394 0.606 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 12.669 27.779 32.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.176 4.176 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.036 3.964 14 N -0.377 5.377 15 C 0.412 3.588 16 O -0.527 6.527 17 N -0.378 5.378 18 C 0.025 3.975 19 C -0.117 4.117 20 H 0.120 0.880 21 C 0.051 3.949 22 H 0.101 0.899 23 O -0.396 6.396 24 C -0.189 4.189 25 C -0.157 4.157 26 C -0.100 4.100 27 H 0.160 0.840 28 C -0.027 4.027 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.246 0.754 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.244 0.756 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.026 11.837 27.088 30.908 hybrid contribution -0.147 -0.341 -0.838 0.916 sum -9.173 11.496 26.250 30.089 Atomic orbital electron populations 1.21673 0.93477 1.00900 1.01590 1.20705 0.96786 0.96360 0.92463 1.21673 0.99863 0.94503 1.01605 1.18970 0.94291 0.94213 0.92317 1.21551 1.30493 1.12131 0.90939 0.90746 1.25982 0.95658 0.95879 1.02812 1.70129 1.38767 1.25037 1.24152 0.85566 0.78970 0.78743 0.78160 1.19035 1.21801 1.19059 1.21083 0.97391 0.94944 0.82992 1.45006 1.56154 1.33288 1.03231 1.15749 0.80045 0.82283 0.80756 1.90878 1.45443 1.29975 1.86381 1.48056 1.53944 1.31087 1.04712 1.21995 1.00097 0.97590 0.77822 1.23105 0.99758 0.95187 0.93699 0.88022 1.22336 0.92740 0.85415 0.94397 0.89898 1.86550 1.74662 1.36215 1.42167 1.22876 0.95476 1.03171 0.97350 1.22432 0.98046 0.99615 0.95615 1.23277 0.93829 1.01727 0.91178 0.84000 1.22237 0.94655 0.86510 0.99252 0.91445 0.92219 0.94585 0.94542 0.92237 0.91402 0.99619 0.99645 0.93186 0.94061 0.94121 0.75395 0.93439 0.91974 0.75566 0.88835 0.91177 0.93326 0.89202 0.90392 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -27.73 7.65 25.60 0.20 -27.54 16 6 H 0.07 3.72 5.68 -2.91 -0.02 3.71 16 7 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 8 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 9 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.16 6.25 4.56 86.38 0.39 6.65 16 14 N -0.72 -22.67 4.92 -478.54 -2.35 -25.03 16 15 C 0.71 24.85 8.49 179.05 1.52 26.37 16 16 O -0.64 -29.31 16.62 -3.99 -0.07 -29.38 16 17 N -0.64 -16.41 3.36 -827.23 -2.78 -19.19 16 18 C 0.15 3.54 5.20 86.35 0.45 3.99 16 19 C -0.10 -1.39 3.99 -8.85 -0.04 -1.42 16 20 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 21 C 0.11 1.12 3.93 31.13 0.12 1.24 16 22 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 23 O -0.59 -8.18 11.77 -148.98 -1.75 -9.94 16 24 C -0.15 -1.14 6.60 31.27 0.21 -0.93 16 25 C -0.12 -1.14 5.59 31.61 0.18 -0.97 16 26 C -0.08 -0.79 4.26 -8.51 -0.04 -0.83 16 27 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 28 C 0.10 1.46 5.38 86.71 0.47 1.93 16 29 H 0.07 1.77 6.86 -2.38 -0.02 1.76 16 30 H 0.06 2.15 6.62 -2.39 -0.02 2.14 16 31 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.06 2.14 6.62 -2.38 -0.02 2.13 16 34 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 35 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 10.08 5.14 -92.71 -0.48 9.61 16 41 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 42 H 0.06 1.62 6.97 -2.39 -0.02 1.60 16 43 H 0.39 2.06 9.10 -74.06 -0.67 1.38 16 44 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.07 0.62 7.95 -2.39 -0.02 0.60 16 46 H 0.05 0.73 7.35 -2.39 -0.02 0.71 16 47 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.08 1.08 7.83 -2.39 -0.02 1.07 16 49 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.95 373.66 0.32 -77.63 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.21 Total: 16.50 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.17 Total: 1.26 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -4.85 Total: -101.88 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.82 Total: -39.32 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -77.95 0.32 -77.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365641069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.329 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds