Wall clock time and date at job start Tue Mar 31 2020 11:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 C 1.53000 * 109.46677 * 119.99958 * 2 1 3 5 5 C 1.53002 * 109.47185 * 65.00062 * 4 2 1 6 6 N 1.46504 * 109.46810 * 180.02562 * 5 4 2 7 7 C 1.46499 * 120.00381 * 90.00065 * 6 5 4 8 8 C 1.50701 * 109.46992 * 269.99655 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.34781 * 119.99832 * 269.99624 * 6 5 4 17 17 O 1.21281 * 120.00142 * 179.97438 * 16 6 5 18 18 C 1.50703 * 120.00021 * 0.02562 * 16 6 5 19 19 C 1.52994 * 109.47165 * 179.97438 * 18 16 6 20 20 H 1.09000 * 109.60333 * 304.67243 * 19 18 16 21 21 C 1.53346 * 109.60647 * 184.18724 * 19 18 16 22 22 C 1.53053 * 108.44045 * 172.72593 * 21 19 18 23 23 C 1.50178 * 109.89384 * 48.88939 * 22 21 19 24 24 O 1.21279 * 118.24412 * 162.44121 * 23 22 21 25 25 N 1.33353 * 123.50521 * 342.41137 * 23 22 21 26 26 C 1.45751 * 124.10986 * 2.24817 * 25 23 22 27 27 H 1.08998 * 109.47255 * 300.00271 * 1 2 3 28 28 H 1.09007 * 109.46887 * 60.00173 * 1 2 3 29 29 H 1.09006 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47255 * 239.99729 * 2 1 3 31 31 H 1.09001 * 109.46859 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46771 * 299.99655 * 3 2 1 33 33 H 1.08998 * 109.47187 * 59.99688 * 3 2 1 34 34 H 1.09000 * 109.47288 * 304.99544 * 4 2 1 35 35 H 1.09004 * 109.47249 * 185.00092 * 4 2 1 36 36 H 1.08992 * 109.47054 * 60.00066 * 5 4 2 37 37 H 1.08994 * 109.47108 * 299.99353 * 5 4 2 38 38 H 1.09002 * 109.47391 * 149.99645 * 7 6 5 39 39 H 1.09001 * 109.46813 * 29.99701 * 7 6 5 40 40 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 41 41 H 1.09000 * 109.47031 * 299.99740 * 18 16 6 42 42 H 1.08999 * 109.46714 * 59.99599 * 18 16 6 43 43 H 1.09010 * 109.67107 * 292.45064 * 21 19 18 44 44 H 1.09003 * 109.67403 * 52.97363 * 21 19 18 45 45 H 1.09000 * 109.40261 * 288.75754 * 22 21 19 46 46 H 1.09003 * 109.33043 * 168.97362 * 22 21 19 47 47 H 0.97004 * 117.94470 * 182.22920 * 25 23 22 48 48 H 1.08989 * 109.30649 * 220.58859 * 26 25 23 49 49 H 1.09010 * 109.13233 * 101.10502 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1880 6 7 2.1228 -2.8859 2.3846 7 6 1.2824 -2.9583 3.5823 8 6 1.5602 -1.7679 4.4636 9 1 2.2895 -1.0308 4.1615 10 6 0.8825 -1.6191 5.6551 11 7 -0.0059 -2.5164 6.0227 12 14 1.2263 -0.1431 6.7471 13 1 0.9213 1.1052 6.0027 14 1 0.3745 -0.2166 7.9613 15 1 2.6569 -0.1448 7.1458 16 6 3.3448 -3.4546 2.3834 17 8 3.7488 -4.0257 3.3741 18 6 4.2096 -3.3797 1.1515 19 6 5.5347 -4.0979 1.4141 20 1 6.0109 -3.6749 2.2987 21 6 6.4581 -3.9342 0.2008 22 6 7.8338 -4.5011 0.5594 23 6 7.6814 -5.8654 1.1683 24 8 8.6557 -6.5862 1.2126 25 7 6.5322 -6.3263 1.6634 26 6 5.2754 -5.5888 1.6345 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6444 1.2953 36 1 2.0698 -2.6550 0.3004 37 1 0.5488 -2.2724 1.1421 38 1 1.5062 -3.8748 4.1284 39 1 0.2323 -2.9569 3.2899 40 1 -0.4824 -2.4119 6.8611 41 1 3.6960 -3.8577 0.3174 42 1 4.4048 -2.3354 0.9076 43 1 6.0471 -4.4790 -0.6492 44 1 6.5505 -2.8774 -0.0500 45 1 8.3236 -3.8387 1.2732 46 1 8.4407 -4.5731 -0.3431 47 1 6.5327 -7.2080 2.0680 48 1 4.7542 -5.7277 2.5815 49 1 4.6558 -5.9704 0.8229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417638611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:04 Heat of formation + Delta-G solvation = -107.197583 kcal Electronic energy + Delta-G solvation = -26929.591716 eV Core-core repulsion = 23276.200832 eV Total energy + Delta-G solvation = -3653.390884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41102 -39.22619 -37.03438 -36.39764 -34.49566 -33.42302 -32.64916 -31.31192 -29.01964 -27.78020 -27.04032 -26.15743 -24.49834 -23.16847 -22.90432 -21.65703 -19.81731 -19.13376 -18.37925 -17.14717 -16.57002 -16.53030 -15.92400 -15.75444 -15.28209 -15.09204 -14.65230 -14.44012 -14.10406 -13.97307 -13.68861 -13.51827 -13.35823 -13.11003 -12.64326 -12.48932 -12.32405 -12.07336 -11.91417 -11.71846 -11.56832 -11.36325 -11.27411 -11.09901 -11.09199 -10.97064 -10.86583 -10.74887 -10.55192 -10.50930 -10.31310 -10.00660 -9.76280 -9.60298 -9.09169 -8.84841 -8.45742 -7.70183 -6.07274 -4.11278 2.64450 3.28108 3.30422 3.33592 3.33777 3.38554 3.83236 4.40622 4.49785 4.59977 4.63067 4.71304 4.96641 5.00971 5.07406 5.17613 5.24255 5.27261 5.34762 5.36958 5.48835 5.56102 5.59518 5.65971 5.68629 5.70361 5.74244 5.78269 5.81891 5.86390 5.94915 6.04138 6.10664 6.20864 6.24409 6.26719 6.35269 6.51652 6.76709 6.77830 7.01717 7.35586 7.39674 7.50940 7.88861 8.20413 8.20915 8.36961 8.86452 9.03583 9.53599 11.00871 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.004157 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.768204 B = 6734.367262 C = 8382.654593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.135 4.135 5 C 0.114 3.886 6 N -0.596 5.596 7 C 0.247 3.753 8 C -0.522 4.522 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.503 3.497 17 O -0.541 6.541 18 C -0.134 4.134 19 C -0.087 4.087 20 H 0.090 0.910 21 C -0.120 4.120 22 C -0.134 4.134 23 C 0.518 3.482 24 O -0.571 6.571 25 N -0.714 5.714 26 C 0.107 3.893 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.398 0.602 48 H 0.103 0.897 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 1.885 -16.200 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.173 4.173 5 C -0.010 4.010 6 N -0.327 5.327 7 C 0.127 3.873 8 C -0.561 4.561 9 H 0.076 0.924 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.289 3.711 17 O -0.420 6.420 18 C -0.175 4.175 19 C -0.106 4.106 20 H 0.108 0.892 21 C -0.157 4.157 22 C -0.174 4.174 23 C 0.305 3.695 24 O -0.451 6.451 25 N -0.364 5.364 26 C -0.017 4.017 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.233 0.767 48 H 0.121 0.879 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.718 1.389 -15.588 16.662 hybrid contribution -0.125 0.722 0.853 1.125 sum 5.593 2.111 -14.735 15.901 Atomic orbital electron populations 1.21898 0.95313 1.01960 1.01507 1.21068 0.95956 0.95999 0.98194 1.21825 1.00684 0.96329 1.01508 1.22143 1.00734 0.95808 0.98623 1.21519 1.00120 0.92076 0.87254 1.48268 1.16588 1.52576 1.15257 1.19275 0.88780 0.98347 0.80852 1.21371 1.22528 1.07785 1.04380 0.92428 1.24912 0.95079 0.96508 0.97497 1.69913 1.25647 1.34737 1.23102 0.86629 0.78368 0.82843 0.80001 1.20275 1.21222 1.20244 1.20308 0.82181 0.79546 0.89016 1.90640 1.71811 1.44136 1.35368 1.21750 0.95144 1.02570 0.98025 1.21195 0.95475 0.94892 0.99086 0.89182 1.21761 0.93888 1.02101 0.97999 1.21616 0.99259 0.93782 1.02708 1.20200 0.82419 0.89323 0.77555 1.90735 1.37378 1.58137 1.58867 1.45508 1.09480 1.21326 1.60126 1.21722 0.84595 0.91233 1.04166 0.92297 0.93379 0.92396 0.91739 0.92980 0.93181 0.92557 0.89681 0.92460 0.92006 0.90573 0.93958 0.95211 0.92706 0.89326 0.88755 0.91112 0.90296 0.88183 0.88315 0.76682 0.87856 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.95 37.16 0.33 -1.30 16 2 C -0.09 -1.01 2.92 -90.62 -0.26 -1.27 16 3 C -0.15 -1.50 9.19 37.16 0.34 -1.16 16 4 C -0.13 -1.85 5.01 -26.73 -0.13 -1.98 16 5 C 0.11 1.63 5.01 -4.04 -0.02 1.61 16 6 N -0.60 -11.24 2.46 -175.06 -0.43 -11.67 16 7 C 0.25 6.02 5.20 -5.19 -0.03 5.99 16 8 C -0.52 -13.93 8.92 -34.44 -0.31 -14.24 16 9 H 0.06 1.53 7.42 -52.49 -0.39 1.14 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 12 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.50 9.02 7.43 -10.98 -0.08 8.94 16 17 O -0.54 -11.94 13.59 5.56 0.08 -11.86 16 18 C -0.13 -1.60 3.73 -27.88 -0.10 -1.70 16 19 C -0.09 -1.00 1.90 -90.48 -0.17 -1.17 16 20 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 21 C -0.12 -1.03 5.32 -26.52 -0.14 -1.18 16 22 C -0.13 -1.33 6.03 -28.11 -0.17 -1.50 16 23 C 0.52 6.95 7.71 -11.87 -0.09 6.85 16 24 O -0.57 -9.82 17.78 5.56 0.10 -9.72 16 25 N -0.71 -8.77 5.45 -61.39 -0.33 -9.10 16 26 C 0.11 1.28 6.10 -4.49 -0.03 1.26 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.63 6.56 -51.93 -0.34 0.28 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.47 7.26 -51.93 -0.38 1.09 16 35 H 0.06 0.77 7.22 -51.93 -0.37 0.39 16 36 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 37 H 0.08 1.10 6.31 -51.93 -0.33 0.77 16 38 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 39 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.09 0.85 7.38 -51.93 -0.38 0.47 16 42 H 0.09 1.00 7.18 -51.93 -0.37 0.62 16 43 H 0.07 0.55 8.13 -51.92 -0.42 0.13 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.40 4.61 8.80 -40.82 -0.36 4.26 16 48 H 0.10 1.53 6.17 -51.94 -0.32 1.21 16 49 H 0.06 0.63 8.10 -51.92 -0.42 0.21 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -32.95 384.15 -8.62 -41.57 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.57 Total: 3.05 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.96 Total: 0.76 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.03 Total: -45.85 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.17 Total: -21.59 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.95 -8.62 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417638611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.632 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds