Wall clock time and date at job start Tue Mar 31 2020 11:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 C 1.53000 * 109.46677 * 119.99958 * 2 1 3 5 5 C 1.53002 * 109.47185 * 65.00062 * 4 2 1 6 6 N 1.46504 * 109.46810 * 180.02562 * 5 4 2 7 7 C 1.46499 * 120.00381 * 90.00065 * 6 5 4 8 8 C 1.50701 * 109.46992 * 269.99655 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.34781 * 119.99832 * 269.99624 * 6 5 4 17 17 O 1.21281 * 120.00142 * 179.97438 * 16 6 5 18 18 C 1.50703 * 120.00021 * 0.02562 * 16 6 5 19 19 C 1.52994 * 109.47165 * 179.97438 * 18 16 6 20 20 H 1.09000 * 109.60333 * 304.67243 * 19 18 16 21 21 C 1.53346 * 109.60647 * 184.18724 * 19 18 16 22 22 C 1.53053 * 108.44045 * 172.72593 * 21 19 18 23 23 C 1.50178 * 109.89384 * 48.88939 * 22 21 19 24 24 O 1.21279 * 118.24412 * 162.44121 * 23 22 21 25 25 N 1.33353 * 123.50521 * 342.41137 * 23 22 21 26 26 C 1.45751 * 124.10986 * 2.24817 * 25 23 22 27 27 H 1.08998 * 109.47255 * 300.00271 * 1 2 3 28 28 H 1.09007 * 109.46887 * 60.00173 * 1 2 3 29 29 H 1.09006 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47255 * 239.99729 * 2 1 3 31 31 H 1.09001 * 109.46859 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46771 * 299.99655 * 3 2 1 33 33 H 1.08998 * 109.47187 * 59.99688 * 3 2 1 34 34 H 1.09000 * 109.47288 * 304.99544 * 4 2 1 35 35 H 1.09004 * 109.47249 * 185.00092 * 4 2 1 36 36 H 1.08992 * 109.47054 * 60.00066 * 5 4 2 37 37 H 1.08994 * 109.47108 * 299.99353 * 5 4 2 38 38 H 1.09002 * 109.47391 * 149.99645 * 7 6 5 39 39 H 1.09001 * 109.46813 * 29.99701 * 7 6 5 40 40 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 41 41 H 1.09000 * 109.47031 * 299.99740 * 18 16 6 42 42 H 1.08999 * 109.46714 * 59.99599 * 18 16 6 43 43 H 1.09010 * 109.67107 * 292.45064 * 21 19 18 44 44 H 1.09003 * 109.67403 * 52.97363 * 21 19 18 45 45 H 1.09000 * 109.40261 * 288.75754 * 22 21 19 46 46 H 1.09003 * 109.33043 * 168.97362 * 22 21 19 47 47 H 0.97004 * 117.94470 * 182.22920 * 25 23 22 48 48 H 1.08989 * 109.30649 * 220.58859 * 26 25 23 49 49 H 1.09010 * 109.13233 * 101.10502 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1880 6 7 2.1228 -2.8859 2.3846 7 6 1.2824 -2.9583 3.5823 8 6 1.5602 -1.7679 4.4636 9 1 2.2895 -1.0308 4.1615 10 6 0.8825 -1.6191 5.6551 11 7 -0.0059 -2.5164 6.0227 12 14 1.2263 -0.1431 6.7471 13 1 0.9213 1.1052 6.0027 14 1 0.3745 -0.2166 7.9613 15 1 2.6569 -0.1448 7.1458 16 6 3.3448 -3.4546 2.3834 17 8 3.7488 -4.0257 3.3741 18 6 4.2096 -3.3797 1.1515 19 6 5.5347 -4.0979 1.4141 20 1 6.0109 -3.6749 2.2987 21 6 6.4581 -3.9342 0.2008 22 6 7.8338 -4.5011 0.5594 23 6 7.6814 -5.8654 1.1683 24 8 8.6557 -6.5862 1.2126 25 7 6.5322 -6.3263 1.6634 26 6 5.2754 -5.5888 1.6345 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6444 1.2953 36 1 2.0698 -2.6550 0.3004 37 1 0.5488 -2.2724 1.1421 38 1 1.5062 -3.8748 4.1284 39 1 0.2323 -2.9569 3.2899 40 1 -0.4824 -2.4119 6.8611 41 1 3.6960 -3.8577 0.3174 42 1 4.4048 -2.3354 0.9076 43 1 6.0471 -4.4790 -0.6492 44 1 6.5505 -2.8774 -0.0500 45 1 8.3236 -3.8387 1.2732 46 1 8.4407 -4.5731 -0.3431 47 1 6.5327 -7.2080 2.0680 48 1 4.7542 -5.7277 2.5815 49 1 4.6558 -5.9704 0.8229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417638611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:03 Heat of formation + Delta-G solvation = -128.901672 kcal Electronic energy + Delta-G solvation = -26930.532876 eV Core-core repulsion = 23276.200832 eV Total energy + Delta-G solvation = -3654.332044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47301 -40.56210 -38.13113 -37.50475 -35.95185 -34.67360 -34.29493 -32.32330 -30.41351 -29.19053 -27.89519 -27.54182 -25.45731 -24.58724 -24.26401 -22.76319 -20.75013 -20.07872 -19.70330 -18.59631 -18.18754 -17.80762 -17.16617 -16.99897 -16.51410 -16.25703 -16.06617 -15.65874 -15.27001 -15.02358 -14.65740 -14.51067 -14.37036 -14.27080 -14.14533 -13.77842 -13.52727 -13.26552 -13.15933 -12.98809 -12.89817 -12.66847 -12.58722 -12.45501 -12.30835 -12.08905 -12.05712 -11.89464 -11.74168 -11.67512 -11.48392 -11.34405 -11.22889 -10.79136 -10.60017 -10.41314 -10.03694 -9.30655 -8.18703 -6.30859 1.35406 1.38661 1.45337 1.62133 1.95073 2.34985 2.37322 2.51096 3.11287 3.58709 3.66574 3.76338 3.86684 4.03030 4.06153 4.15253 4.25088 4.37875 4.43263 4.51114 4.59355 4.64053 4.69967 4.77434 4.84515 4.86004 4.90675 4.95543 4.96836 5.01820 5.06986 5.09672 5.17788 5.22154 5.25755 5.30992 5.33765 5.41883 5.48413 5.57708 5.64931 5.73558 5.77152 5.93283 6.12496 6.37205 6.76780 6.92228 7.18747 7.34668 7.61099 8.87833 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.004157 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.768204 B = 6734.367262 C = 8382.654593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.128 4.128 5 C 0.110 3.890 6 N -0.603 5.603 7 C 0.263 3.737 8 C -0.526 4.526 9 H 0.055 0.945 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.956 3.044 13 H -0.262 1.262 14 H -0.282 1.282 15 H -0.279 1.279 16 C 0.492 3.508 17 O -0.593 6.593 18 C -0.118 4.118 19 C -0.086 4.086 20 H 0.061 0.939 21 C -0.106 4.106 22 C -0.131 4.131 23 C 0.510 3.490 24 O -0.617 6.617 25 N -0.712 5.712 26 C 0.109 3.891 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.069 0.931 38 H -0.004 1.004 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.397 0.603 48 H 0.068 0.932 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 3.721 -19.761 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 C -0.204 4.204 4 C -0.167 4.167 5 C -0.012 4.012 6 N -0.333 5.333 7 C 0.141 3.859 8 C -0.565 4.565 9 H 0.073 0.927 10 C -0.190 4.190 11 N -0.570 5.570 12 Si 0.781 3.219 13 H -0.187 1.187 14 H -0.207 1.207 15 H -0.205 1.205 16 C 0.281 3.719 17 O -0.475 6.475 18 C -0.157 4.157 19 C -0.105 4.105 20 H 0.080 0.920 21 C -0.144 4.144 22 C -0.170 4.170 23 C 0.299 3.701 24 O -0.501 6.501 25 N -0.360 5.360 26 C -0.015 4.015 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.014 0.986 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.136 0.864 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.572 3.259 -19.194 20.548 hybrid contribution -0.431 0.091 1.992 2.040 sum 6.141 3.350 -17.203 18.571 Atomic orbital electron populations 1.21917 0.95801 1.01876 1.01261 1.21045 0.95474 0.96260 0.97596 1.21829 1.01237 0.95892 1.01394 1.22045 1.00882 0.95315 0.98410 1.21831 1.00221 0.92396 0.86751 1.48258 1.16683 1.53457 1.14909 1.18665 0.88989 0.95433 0.82825 1.21659 1.21900 1.08124 1.04822 0.92702 1.25754 0.95012 0.99227 0.99052 1.70036 1.26790 1.36586 1.23631 0.85649 0.77860 0.80073 0.78341 1.18668 1.20740 1.20476 1.21502 0.81939 0.77878 0.90544 1.90629 1.72800 1.46053 1.38019 1.21762 0.93919 1.04724 0.95340 1.21171 0.95880 0.93749 0.99740 0.92007 1.21731 0.91829 1.04140 0.96654 1.21680 1.00727 0.91313 1.03296 1.20942 0.81688 0.90422 0.77037 1.90711 1.38740 1.59715 1.60888 1.45581 1.09648 1.21318 1.59482 1.21690 0.84297 0.92259 1.03250 0.94775 0.91407 0.92450 0.88516 0.92112 0.91441 0.94577 0.94236 0.91722 0.87110 0.91242 0.98555 0.96587 0.92704 0.85451 0.86057 0.89028 0.87412 0.87742 0.86444 0.76856 0.91328 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.95 71.98 0.64 -2.36 16 2 C -0.08 -1.54 2.92 -10.79 -0.03 -1.58 16 3 C -0.15 -2.57 9.19 71.98 0.66 -1.90 16 4 C -0.13 -3.25 5.01 30.60 0.15 -3.10 16 5 C 0.11 2.89 5.01 86.38 0.43 3.32 16 6 N -0.60 -22.70 2.46 -826.15 -2.03 -24.73 16 7 C 0.26 13.45 5.20 85.63 0.45 13.90 16 8 C -0.53 -29.12 8.92 25.60 0.23 -28.89 16 9 H 0.05 2.99 7.42 -2.91 -0.02 2.97 16 10 C 0.01 0.46 5.46 84.66 0.46 0.92 16 11 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 12 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 13 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 C 0.49 17.37 7.43 87.66 0.65 18.02 16 17 O -0.59 -27.25 13.59 -3.03 -0.04 -27.29 16 18 C -0.12 -2.34 3.73 29.85 0.11 -2.23 16 19 C -0.09 -1.75 1.90 -10.71 -0.02 -1.77 16 20 H 0.06 1.63 7.95 -2.39 -0.02 1.61 16 21 C -0.11 -1.32 5.32 30.73 0.16 -1.16 16 22 C -0.13 -2.20 6.03 29.70 0.18 -2.02 16 23 C 0.51 13.16 7.71 87.71 0.68 13.84 16 24 O -0.62 -21.21 17.78 -3.03 -0.05 -21.26 16 25 N -0.71 -17.17 5.45 -467.32 -2.55 -19.72 16 26 C 0.11 2.50 6.10 86.49 0.53 3.03 16 27 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.06 1.13 6.56 -2.38 -0.02 1.11 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 1.37 7.26 -2.39 -0.02 1.35 16 35 H 0.06 1.53 7.22 -2.39 -0.02 1.52 16 36 H 0.11 1.85 6.44 -2.39 -0.02 1.83 16 37 H 0.07 1.92 6.31 -2.39 -0.02 1.91 16 38 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 39 H 0.02 0.85 7.89 -2.39 -0.02 0.83 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.13 1.64 7.38 -2.39 -0.02 1.62 16 42 H 0.12 1.87 7.18 -2.39 -0.02 1.86 16 43 H 0.09 0.85 8.13 -2.38 -0.02 0.83 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.40 9.44 8.80 -92.71 -0.82 8.63 16 48 H 0.07 2.11 6.17 -2.39 -0.01 2.09 16 49 H 0.08 1.53 8.10 -2.38 -0.02 1.51 16 Total: -1.00 -78.69 384.15 3.04 -75.65 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.11 Total: 18.17 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.29 Total: 8.03 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -4.29 Total: -99.86 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.10 Total: -48.55 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -78.69 3.04 -75.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417638611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.250 kcal (2) G-P(sol) polarization free energy of solvation -78.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds