Wall clock time and date at job start Tue Mar 31 2020 09:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99877 * 2 1 4 4 C 1.53001 * 109.47098 * 125.00180 * 3 2 1 5 5 C 1.50703 * 109.46771 * 300.00055 * 4 3 2 6 6 O 1.21283 * 119.99488 * 239.99768 * 5 4 3 7 7 N 1.34777 * 120.00290 * 60.00208 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 H 1.09008 * 109.47304 * 304.99667 * 9 8 7 11 11 O 1.42902 * 109.47328 * 64.99617 * 9 8 7 12 12 C 1.53003 * 109.47530 * 184.99929 * 9 8 7 13 13 N 1.46491 * 109.47329 * 179.97438 * 12 9 8 14 14 C 1.36943 * 120.00083 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99413 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00067 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99532 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47242 * 90.00151 * 18 16 14 20 20 H 1.48506 * 109.46926 * 209.99378 * 18 16 14 21 21 H 1.48495 * 109.47585 * 329.99870 * 18 16 14 22 22 C 1.53007 * 109.47119 * 59.99766 * 4 3 2 23 23 C 1.52999 * 109.46565 * 180.02562 * 22 4 3 24 24 C 1.52997 * 109.47220 * 299.99458 * 23 22 4 25 25 C 1.53007 * 109.46909 * 60.00752 * 24 23 22 26 26 C 1.52990 * 109.47023 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.00196 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00172 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00172 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47217 * 4.99671 * 3 2 1 31 31 H 1.08998 * 109.46953 * 244.99689 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 34 34 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 35 35 H 0.96696 * 113.99765 * 60.00422 * 11 9 8 36 36 H 1.09000 * 109.46800 * 300.00452 * 12 9 8 37 37 H 1.09002 * 109.46892 * 59.99206 * 12 9 8 38 38 H 0.97004 * 120.00228 * 359.97438 * 13 12 9 39 39 H 0.96990 * 120.00008 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46852 * 300.00098 * 22 4 3 41 41 H 1.08993 * 109.46731 * 60.00335 * 22 4 3 42 42 H 1.09006 * 109.46830 * 179.97438 * 23 22 4 43 43 H 1.08993 * 109.47608 * 60.00522 * 23 22 4 44 44 H 1.08998 * 109.47240 * 300.01006 * 24 23 22 45 45 H 1.08997 * 109.47280 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.46852 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.46731 * 59.99664 * 25 24 23 48 48 H 1.09007 * 109.47253 * 299.99484 * 26 4 3 49 49 H 1.08998 * 109.47508 * 59.99879 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 2.2638 1.1982 2.4693 6 8 2.3205 2.0756 3.3048 7 7 1.5112 0.1027 2.6925 8 6 0.7567 -0.0255 3.9417 9 6 -0.0127 -1.3480 3.9394 10 1 -0.6365 -1.4039 3.0472 11 8 0.9123 -2.4372 3.9428 12 6 -0.8970 -1.4259 5.1855 13 7 -1.6340 -2.6919 5.1829 14 6 -2.4950 -2.9850 6.2067 15 1 -2.6302 -2.2830 7.0162 16 6 -3.1938 -4.1844 6.2040 17 7 -3.0294 -5.0397 5.2172 18 14 -4.3676 -4.5845 7.6009 19 1 -5.7240 -4.0799 7.2677 20 1 -4.4211 -6.0556 7.7965 21 1 -3.8911 -3.9361 8.8490 22 6 4.0246 0.1729 1.0559 23 6 4.9957 0.2006 2.2379 24 6 5.7608 1.5255 2.2384 25 6 4.7712 2.6858 2.3641 26 6 3.8004 2.6578 1.1812 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 1.4656 -0.5988 2.0241 33 1 1.4460 -0.0076 4.7859 34 1 0.0542 0.8033 4.0287 35 1 1.5009 -2.4509 4.7099 36 1 -0.2732 -1.3699 6.0777 37 1 -1.6025 -0.5950 5.1829 38 1 -1.5128 -3.3222 4.4556 39 1 -3.5174 -5.8779 5.2155 40 1 3.4795 -0.7711 1.0559 41 1 4.5823 0.2704 0.1245 42 1 5.7004 -0.6263 2.1486 43 1 4.4376 0.1028 3.1690 44 1 6.3188 1.6232 1.3072 45 1 6.4529 1.5451 3.0802 46 1 5.3164 3.6297 2.3649 47 1 4.2132 2.5880 3.2953 48 1 4.3583 2.7548 0.2498 49 1 3.0958 3.4846 1.2706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753936674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:44 Heat of formation + Delta-G solvation = -79.527211 kcal Electronic energy + Delta-G solvation = -27133.701590 eV Core-core repulsion = 23481.510584 eV Total energy + Delta-G solvation = -3652.191006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07902 -38.08920 -37.06068 -35.64760 -34.17398 -33.83283 -31.57967 -31.30192 -30.86800 -28.97038 -26.33010 -25.57145 -23.34478 -23.03626 -22.10032 -21.38988 -20.91823 -19.83729 -19.36005 -17.17481 -16.82328 -16.32455 -16.03188 -15.79948 -15.53153 -14.84654 -14.56311 -14.48684 -14.33944 -13.96779 -13.81252 -13.75059 -13.51485 -13.04704 -12.93224 -12.54355 -12.50517 -12.29235 -12.20363 -12.14467 -11.83958 -11.69590 -11.34388 -11.23123 -10.96195 -10.83044 -10.81191 -10.60655 -10.36603 -10.19120 -10.17561 -9.84562 -9.68664 -9.49848 -9.33380 -8.93142 -8.87492 -6.94457 -5.76915 -3.06499 2.02724 2.69719 3.21855 3.43020 3.48195 3.49933 4.28555 4.42948 4.47552 4.55768 4.72059 4.77525 4.78197 4.88646 4.97826 5.00113 5.07601 5.20018 5.25197 5.28960 5.32735 5.38194 5.43674 5.55330 5.61205 5.63167 5.65416 5.73032 5.77441 5.82673 5.86539 5.95995 5.98659 6.02296 6.09147 6.13138 6.20299 6.36474 6.42516 6.50510 6.52335 6.58570 6.68213 7.58866 7.67840 7.94891 8.30721 8.41389 9.53066 10.09765 10.45809 11.45428 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.002879 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.545128 B = 9722.647381 C =10104.684026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.179 4.179 3 C -0.081 4.081 4 C -0.071 4.071 5 C 0.525 3.475 6 O -0.543 6.543 7 N -0.717 5.717 8 C 0.088 3.912 9 C 0.090 3.910 10 H 0.102 0.898 11 O -0.552 6.552 12 C 0.127 3.873 13 N -0.725 5.725 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.134 4.134 26 C -0.091 4.091 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.404 0.596 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.373 0.627 36 H 0.022 0.978 37 H 0.028 0.972 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.665 13.738 -12.800 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.197 4.197 3 C -0.119 4.119 4 C -0.074 4.074 5 C 0.311 3.689 6 O -0.421 6.421 7 N -0.371 5.371 8 C -0.036 4.036 9 C 0.030 3.970 10 H 0.120 0.880 11 O -0.357 6.357 12 C -0.002 4.002 13 N -0.370 5.370 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.171 4.171 26 C -0.129 4.129 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.220 0.780 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.296 14.209 -12.594 25.021 hybrid contribution -0.524 -0.691 0.771 1.160 sum 15.772 13.518 -11.823 23.902 Atomic orbital electron populations 1.24018 0.95894 1.02492 0.98490 1.22959 0.96251 0.98452 1.01991 1.20794 0.97604 0.96084 0.97384 1.20861 0.95390 0.98228 0.92935 1.20376 0.78882 0.81498 0.88114 1.90610 1.63797 1.40605 1.47040 1.46271 1.47926 1.22042 1.20842 1.22075 0.95680 0.99073 0.86800 1.22362 0.89828 0.84018 1.00749 0.87994 1.86565 1.50948 1.49316 1.48875 1.21192 0.93720 0.91262 0.94023 1.42226 1.49840 1.17214 1.27744 1.19221 1.16381 1.01289 1.00569 0.91242 1.24754 1.00696 0.97007 0.98389 1.69674 1.45542 1.10233 1.32360 0.86185 0.81032 0.77286 0.81640 1.21692 1.21726 1.20751 1.21652 0.96543 0.96888 0.99420 1.21566 0.98270 0.97721 0.98517 1.21535 0.97783 0.94845 1.01379 1.21807 0.97045 0.97540 1.00746 1.21355 0.97827 0.94958 0.98734 0.87775 0.88524 0.86680 0.90960 0.89880 0.75683 0.91301 0.90681 0.78001 0.95998 0.95459 0.77660 0.93486 0.91211 0.90803 0.91705 0.91904 0.92372 0.92260 0.92486 0.88933 0.91644 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 13.91 29.01 0.40 -1.17 16 2 C -0.18 -1.51 5.81 -36.03 -0.21 -1.72 16 3 C -0.08 -0.65 4.72 -27.88 -0.13 -0.79 16 4 C -0.07 -0.66 0.50 -155.66 -0.08 -0.74 16 5 C 0.53 6.50 4.93 -10.98 -0.05 6.45 16 6 O -0.54 -8.44 13.66 5.55 0.08 -8.37 16 7 N -0.72 -8.54 4.73 -60.30 -0.29 -8.82 16 8 C 0.09 1.18 5.31 -4.04 -0.02 1.16 16 9 C 0.09 1.39 3.09 -26.73 -0.08 1.31 16 10 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 11 O -0.55 -8.76 13.03 -35.23 -0.46 -9.22 16 12 C 0.13 2.47 5.92 -4.05 -0.02 2.44 16 13 N -0.73 -18.35 5.49 -59.91 -0.33 -18.68 16 14 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 18 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 C -0.11 -0.88 4.38 -26.73 -0.12 -1.00 16 23 C -0.12 -1.11 5.70 -26.73 -0.15 -1.27 16 24 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 25 C -0.13 -1.34 5.63 -26.70 -0.15 -1.49 16 26 C -0.09 -0.83 4.37 -26.71 -0.12 -0.95 16 27 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 29 H 0.12 0.90 6.67 -52.49 -0.35 0.55 16 30 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 4.47 4.89 -40.82 -0.20 4.27 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.37 5.01 9.04 45.56 0.41 5.42 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.39 10.52 7.54 -40.82 -0.31 10.21 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.07 0.57 5.97 -51.93 -0.31 0.26 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.70 7.22 -51.93 -0.37 0.32 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 1.19 5.51 -51.93 -0.29 0.90 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -32.36 379.01 -8.42 -40.78 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -7.70 Total: 15.10 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.14 Total: -6.37 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.11 Total: -55.08 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.38 Total: -17.59 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.36 -8.42 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753936674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.748 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds