Wall clock time and date at job start Tue Mar 31 2020 09:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99877 * 2 1 4 4 C 1.53001 * 109.47098 * 125.00180 * 3 2 1 5 5 C 1.50703 * 109.46771 * 300.00055 * 4 3 2 6 6 O 1.21283 * 119.99488 * 239.99768 * 5 4 3 7 7 N 1.34777 * 120.00290 * 60.00208 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 H 1.09008 * 109.47304 * 304.99667 * 9 8 7 11 11 O 1.42902 * 109.47328 * 64.99617 * 9 8 7 12 12 C 1.53003 * 109.47530 * 184.99929 * 9 8 7 13 13 N 1.46491 * 109.47329 * 179.97438 * 12 9 8 14 14 C 1.36943 * 120.00083 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99413 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00067 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99532 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47242 * 90.00151 * 18 16 14 20 20 H 1.48506 * 109.46926 * 209.99378 * 18 16 14 21 21 H 1.48495 * 109.47585 * 329.99870 * 18 16 14 22 22 C 1.53007 * 109.47119 * 59.99766 * 4 3 2 23 23 C 1.52999 * 109.46565 * 180.02562 * 22 4 3 24 24 C 1.52997 * 109.47220 * 299.99458 * 23 22 4 25 25 C 1.53007 * 109.46909 * 60.00752 * 24 23 22 26 26 C 1.52990 * 109.47023 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.00196 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00172 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00172 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47217 * 4.99671 * 3 2 1 31 31 H 1.08998 * 109.46953 * 244.99689 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 34 34 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 35 35 H 0.96696 * 113.99765 * 60.00422 * 11 9 8 36 36 H 1.09000 * 109.46800 * 300.00452 * 12 9 8 37 37 H 1.09002 * 109.46892 * 59.99206 * 12 9 8 38 38 H 0.97004 * 120.00228 * 359.97438 * 13 12 9 39 39 H 0.96990 * 120.00008 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46852 * 300.00098 * 22 4 3 41 41 H 1.08993 * 109.46731 * 60.00335 * 22 4 3 42 42 H 1.09006 * 109.46830 * 179.97438 * 23 22 4 43 43 H 1.08993 * 109.47608 * 60.00522 * 23 22 4 44 44 H 1.08998 * 109.47240 * 300.01006 * 24 23 22 45 45 H 1.08997 * 109.47280 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.46852 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.46731 * 59.99664 * 25 24 23 48 48 H 1.09007 * 109.47253 * 299.99484 * 26 4 3 49 49 H 1.08998 * 109.47508 * 59.99879 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 2.2638 1.1982 2.4693 6 8 2.3205 2.0756 3.3048 7 7 1.5112 0.1027 2.6925 8 6 0.7567 -0.0255 3.9417 9 6 -0.0127 -1.3480 3.9394 10 1 -0.6365 -1.4039 3.0472 11 8 0.9123 -2.4372 3.9428 12 6 -0.8970 -1.4259 5.1855 13 7 -1.6340 -2.6919 5.1829 14 6 -2.4950 -2.9850 6.2067 15 1 -2.6302 -2.2830 7.0162 16 6 -3.1938 -4.1844 6.2040 17 7 -3.0294 -5.0397 5.2172 18 14 -4.3676 -4.5845 7.6009 19 1 -5.7240 -4.0799 7.2677 20 1 -4.4211 -6.0556 7.7965 21 1 -3.8911 -3.9361 8.8490 22 6 4.0246 0.1729 1.0559 23 6 4.9957 0.2006 2.2379 24 6 5.7608 1.5255 2.2384 25 6 4.7712 2.6858 2.3641 26 6 3.8004 2.6578 1.1812 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 1.4656 -0.5988 2.0241 33 1 1.4460 -0.0076 4.7859 34 1 0.0542 0.8033 4.0287 35 1 1.5009 -2.4509 4.7099 36 1 -0.2732 -1.3699 6.0777 37 1 -1.6025 -0.5950 5.1829 38 1 -1.5128 -3.3222 4.4556 39 1 -3.5174 -5.8779 5.2155 40 1 3.4795 -0.7711 1.0559 41 1 4.5823 0.2704 0.1245 42 1 5.7004 -0.6263 2.1486 43 1 4.4376 0.1028 3.1690 44 1 6.3188 1.6232 1.3072 45 1 6.4529 1.5451 3.0802 46 1 5.3164 3.6297 2.3649 47 1 4.2132 2.5880 3.2953 48 1 4.3583 2.7548 0.2498 49 1 3.0958 3.4846 1.2706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753936674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:43 Heat of formation + Delta-G solvation = -102.286281 kcal Electronic energy + Delta-G solvation = -27134.688498 eV Core-core repulsion = 23481.510584 eV Total energy + Delta-G solvation = -3653.177914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95378 -39.29390 -38.10275 -36.49252 -35.97585 -34.89846 -33.19637 -32.28463 -31.66412 -30.43579 -27.19440 -26.99183 -24.84625 -23.85959 -23.24649 -22.75547 -21.72113 -20.55195 -20.31230 -19.21161 -17.92641 -17.40256 -17.10958 -16.83755 -16.46950 -16.39058 -15.83651 -15.59282 -15.28859 -15.10666 -14.93646 -14.73647 -14.54817 -14.41708 -14.13288 -13.89361 -13.57167 -13.19873 -13.18666 -12.96981 -12.93541 -12.87828 -12.76309 -12.38227 -12.17364 -12.02617 -11.97989 -11.92845 -11.82198 -11.60355 -11.06440 -11.05962 -10.97020 -10.88610 -10.43528 -10.22333 -9.90300 -9.02364 -7.95777 -5.25430 1.32076 1.46993 1.48632 1.57171 1.73827 2.22144 2.55730 3.34893 3.44032 3.57518 3.61119 3.68662 3.78293 4.00346 4.04124 4.10509 4.18930 4.23156 4.29951 4.38680 4.40313 4.50348 4.56562 4.60470 4.65065 4.69804 4.74230 4.79160 4.90551 4.95797 4.99299 5.07509 5.10549 5.16270 5.19100 5.27288 5.31026 5.38657 5.40417 5.45940 5.48042 5.69820 5.74305 5.83898 6.25270 6.61023 6.76892 7.32552 7.33098 8.07298 8.31423 9.27324 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.002879 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.545128 B = 9722.647381 C =10104.684026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.173 4.173 3 C -0.078 4.078 4 C -0.064 4.064 5 C 0.521 3.479 6 O -0.578 6.578 7 N -0.710 5.710 8 C 0.100 3.900 9 C 0.111 3.889 10 H 0.099 0.901 11 O -0.561 6.561 12 C 0.123 3.877 13 N -0.738 5.738 14 C -0.250 4.250 15 H 0.075 0.925 16 C -0.074 4.074 17 N -0.966 5.966 18 Si 0.974 3.026 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.270 1.270 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.135 4.135 26 C -0.090 4.090 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.410 0.590 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.384 0.616 36 H 0.029 0.971 37 H 0.031 0.969 38 H 0.377 0.623 39 H 0.252 0.748 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.093 0.907 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.910 14.226 -13.809 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.190 4.190 3 C -0.115 4.115 4 C -0.067 4.067 5 C 0.309 3.691 6 O -0.458 6.458 7 N -0.365 5.365 8 C -0.025 4.025 9 C 0.051 3.949 10 H 0.117 0.883 11 O -0.367 6.367 12 C -0.005 4.005 13 N -0.381 5.381 14 C -0.382 4.382 15 H 0.093 0.907 16 C -0.266 4.266 17 N -0.617 5.617 18 Si 0.803 3.197 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.195 1.195 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.152 4.152 25 C -0.173 4.173 26 C -0.128 4.128 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.210 0.790 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.111 0.889 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.562 14.730 -13.598 26.651 hybrid contribution -0.851 -0.767 1.109 1.595 sum 16.710 13.963 -12.489 25.103 Atomic orbital electron populations 1.24036 0.96405 1.02241 0.99728 1.23101 0.96016 0.99132 1.00794 1.20813 0.97374 0.95499 0.97839 1.20876 0.95502 0.99013 0.91352 1.21044 0.78480 0.80697 0.88919 1.90607 1.64892 1.41782 1.48503 1.46213 1.47613 1.22336 1.20309 1.21801 0.95476 0.97491 0.87712 1.22050 0.89368 0.84935 0.98570 0.88350 1.86543 1.51063 1.49547 1.49596 1.21383 0.93967 0.88841 0.96273 1.42389 1.50166 1.18804 1.26787 1.19633 1.16235 1.01252 1.01051 0.90716 1.25584 1.02853 0.97189 1.00995 1.69828 1.46909 1.10579 1.34360 0.85134 0.78825 0.76634 0.79106 1.21334 1.22087 1.19461 1.21693 0.96195 0.96249 1.00122 1.21573 0.98516 0.98431 0.97659 1.21520 0.97395 0.93922 1.02355 1.21759 0.97317 0.98590 0.99586 1.21381 0.97567 0.94292 0.99547 0.88259 0.88759 0.85657 0.91695 0.87238 0.75008 0.91394 0.91158 0.76750 0.95335 0.95113 0.79005 0.93949 0.91037 0.88188 0.90488 0.94667 0.90272 0.92529 0.91835 0.92311 0.88858 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 13.91 67.78 0.94 -2.33 16 2 C -0.17 -2.59 5.81 25.65 0.15 -2.44 16 3 C -0.08 -1.07 4.72 29.85 0.14 -0.93 16 4 C -0.06 -1.07 0.50 -52.93 -0.03 -1.10 16 5 C 0.52 12.64 4.93 87.66 0.43 13.07 16 6 O -0.58 -18.26 13.66 -3.04 -0.04 -18.31 16 7 N -0.71 -16.50 4.73 -463.07 -2.19 -18.69 16 8 C 0.10 2.66 5.31 86.38 0.46 3.12 16 9 C 0.11 3.37 3.09 30.59 0.09 3.47 16 10 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 11 O -0.56 -17.46 13.03 -148.98 -1.94 -19.40 16 12 C 0.12 4.75 5.92 86.38 0.51 5.26 16 13 N -0.74 -37.50 5.49 -343.46 -1.89 -39.39 16 14 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 15 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 16 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 17 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 18 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 C -0.11 -1.43 4.38 30.60 0.13 -1.29 16 23 C -0.12 -2.02 5.70 30.59 0.17 -1.85 16 24 C -0.11 -1.76 5.92 30.60 0.18 -1.58 16 25 C -0.14 -2.56 5.63 30.61 0.17 -2.39 16 26 C -0.09 -1.48 4.37 30.61 0.13 -1.35 16 27 H 0.10 1.82 8.06 -2.91 -0.02 1.79 16 28 H 0.09 1.67 7.84 -2.91 -0.02 1.64 16 29 H 0.13 1.64 6.67 -2.91 -0.02 1.62 16 30 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 8.62 4.89 -92.71 -0.45 8.17 16 33 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.38 10.03 9.04 -74.06 -0.67 9.36 16 36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.38 20.68 7.54 -92.71 -0.70 19.98 16 39 H 0.25 14.99 8.31 -92.72 -0.77 14.21 16 40 H 0.07 0.96 5.97 -2.39 -0.01 0.95 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.03 0.76 7.22 -2.39 -0.02 0.74 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 1.54 5.51 -2.39 -0.01 1.53 16 48 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 Total: -1.00 -69.78 379.01 0.18 -69.60 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -0.88 Total: 44.45 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 4.81 Total: -7.33 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -3.79 Total: -117.31 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.98 Total: -37.71 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.78 0.18 -69.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753936674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.685 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds