Wall clock time and date at job start Tue Mar 31 2020 09:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50708 * 120.00006 * 2 1 4 4 C 1.50703 * 120.00390 * 180.27732 * 2 1 3 5 5 C 1.52995 * 109.47094 * 127.03549 * 4 2 1 6 6 C 1.53003 * 109.47065 * 247.03957 * 4 2 1 7 7 C 1.50697 * 109.46615 * 7.03504 * 4 2 1 8 8 O 1.21284 * 120.00153 * 238.76144 * 7 4 2 9 9 N 1.34779 * 119.99970 * 58.76616 * 7 4 2 10 10 C 1.46921 * 120.62891 * 2.71901 * 9 7 4 11 11 C 1.52757 * 109.00971 * 233.58141 * 10 9 7 12 12 C 1.53047 * 109.38473 * 305.59083 * 11 10 9 13 13 O 1.42901 * 109.44757 * 301.22525 * 12 11 10 14 14 C 1.52996 * 109.45943 * 181.25397 * 12 11 10 15 15 N 1.46507 * 109.46969 * 59.93489 * 14 12 11 16 16 C 1.36938 * 119.99796 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00382 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99657 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00371 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00157 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47018 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47467 * 120.00235 * 20 18 16 23 23 H 1.48499 * 109.47505 * 240.00566 * 20 18 16 24 24 C 1.53039 * 109.53560 * 61.23593 * 12 11 10 25 25 C 1.46931 * 120.62967 * 182.99647 * 9 7 4 26 26 H 1.07999 * 119.99881 * 355.50287 * 1 2 3 27 27 H 1.07995 * 119.99572 * 175.50159 * 1 2 3 28 28 H 1.09001 * 109.47102 * 89.99720 * 3 2 1 29 29 H 1.08992 * 109.47228 * 210.00278 * 3 2 1 30 30 H 1.09001 * 109.46964 * 330.00467 * 3 2 1 31 31 H 1.09000 * 109.47098 * 64.97418 * 5 4 2 32 32 H 1.08999 * 109.46956 * 184.97120 * 5 4 2 33 33 H 1.08991 * 109.47536 * 304.96876 * 5 4 2 34 34 H 1.09003 * 109.47338 * 55.04099 * 6 4 2 35 35 H 1.08996 * 109.46933 * 175.04678 * 6 4 2 36 36 H 1.08998 * 109.46964 * 295.04509 * 6 4 2 37 37 H 1.08992 * 109.58969 * 353.41987 * 10 9 7 38 38 H 1.09007 * 109.58705 * 113.84731 * 10 9 7 39 39 H 1.09002 * 109.56855 * 185.55679 * 11 10 9 40 40 H 1.08999 * 109.35906 * 65.49870 * 11 10 9 41 41 H 0.96700 * 113.99620 * 300.05979 * 13 12 11 42 42 H 1.09008 * 109.46955 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.47538 * 299.93352 * 14 12 11 44 44 H 0.96997 * 120.00191 * 359.97438 * 15 14 12 45 45 H 0.96996 * 120.00158 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.49688 * 178.68487 * 24 12 11 47 47 H 1.09003 * 109.49749 * 58.59086 * 24 12 11 48 48 H 1.08998 * 109.58522 * 246.15960 * 25 9 7 49 49 H 1.08998 * 109.58541 * 6.58250 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0063 5 6 3.0710 -1.3067 -1.1578 6 6 2.8060 -1.4717 1.3211 7 6 1.0936 -2.4443 -0.1859 8 8 1.0208 -3.3168 0.6534 9 7 0.3069 -2.4936 -1.2792 10 6 0.4253 -1.4767 -2.3330 11 6 -0.9508 -0.8664 -2.5924 12 6 -1.9507 -1.9823 -2.9046 13 8 -1.5041 -2.7153 -4.0472 14 6 -3.3226 -1.3707 -3.1955 15 7 -3.2211 -0.4682 -4.3451 16 6 -4.3308 0.1977 -4.7927 17 1 -5.2808 0.0573 -4.2987 18 6 -4.2345 1.0532 -5.8816 19 7 -3.0768 1.2240 -6.4841 20 14 -5.7483 1.9611 -6.4929 21 1 -6.9165 1.5986 -5.6508 22 1 -5.5144 3.4252 -6.4103 23 1 -6.0174 1.5816 -7.9031 24 6 -2.0569 -2.9250 -1.7037 25 6 -0.6894 -3.5618 -1.4369 26 1 -0.5400 0.9324 0.0733 27 1 -0.5399 -0.9324 -0.0734 28 1 2.2452 1.6199 1.0277 29 1 3.0159 1.1749 -0.5138 30 1 1.4744 2.0648 -0.5138 31 1 3.8246 -0.5389 -0.9823 32 1 3.5533 -2.2823 -1.2172 33 1 2.5529 -1.1000 -2.0942 34 1 2.0994 -1.3825 2.1463 35 1 3.2789 -2.4533 1.3522 36 1 3.5685 -0.6981 1.4106 37 1 1.1150 -0.6962 -2.0118 38 1 0.7949 -1.9399 -3.2479 39 1 -0.8931 -0.1824 -3.4391 40 1 -1.2778 -0.3225 -1.7062 41 1 -1.4137 -2.1797 -4.8473 42 1 -4.0347 -2.1654 -3.4183 43 1 -3.6635 -0.8121 -2.3239 44 1 -2.3680 -0.3424 -4.7891 45 1 -3.0096 1.8215 -7.2452 46 1 -2.7864 -3.7061 -1.9178 47 1 -2.3735 -2.3617 -0.8259 48 1 -0.4126 -4.1985 -2.2772 49 1 -0.7350 -4.1566 -0.5246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755151739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:15 Heat of formation + Delta-G solvation = -62.136850 kcal Electronic energy + Delta-G solvation = -28225.959702 eV Core-core repulsion = 24574.522798 eV Total energy + Delta-G solvation = -3651.436904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.29641 -39.99703 -37.88470 -36.84603 -35.75197 -33.50261 -32.99896 -32.45558 -31.82266 -28.72777 -28.38032 -27.87083 -25.81216 -24.44987 -24.27019 -22.93967 -21.76429 -20.46432 -19.51617 -19.29035 -17.84519 -17.28977 -16.91870 -16.79198 -16.58026 -15.88372 -15.81177 -15.39606 -15.20329 -15.02773 -14.79642 -14.50921 -14.31270 -14.29977 -14.05335 -13.71762 -13.45558 -13.36872 -13.18332 -13.08899 -12.95522 -12.91234 -12.79093 -12.64876 -12.40397 -12.25324 -12.18378 -12.02160 -11.98949 -11.95742 -11.62126 -11.31713 -10.97923 -10.83163 -10.54954 -9.84016 -9.62509 -9.01452 -7.96441 -5.24421 1.22241 1.47798 1.49163 1.53296 1.58027 1.96159 2.55014 3.24707 3.32293 3.41341 3.60958 3.64740 3.74072 3.89347 4.01271 4.03325 4.12022 4.22394 4.23812 4.33551 4.43142 4.56073 4.65834 4.69653 4.73690 4.74471 4.81530 4.83123 4.85629 4.88759 4.91597 4.92773 4.99010 5.06571 5.08267 5.16213 5.20227 5.25150 5.31008 5.32419 5.49875 5.52421 5.66055 5.85697 6.25498 6.37466 6.73690 7.08734 7.33990 8.04170 8.30239 9.26307 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.003820 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.005638 B = 7328.981262 C = 8047.973042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.115 4.115 4 C -0.044 4.044 5 C -0.154 4.154 6 C -0.118 4.118 7 C 0.522 3.478 8 O -0.581 6.581 9 N -0.599 5.599 10 C 0.105 3.895 11 C -0.155 4.155 12 C 0.139 3.861 13 O -0.563 6.563 14 C 0.129 3.871 15 N -0.734 5.734 16 C -0.247 4.247 17 H 0.070 0.930 18 C -0.064 4.064 19 N -0.961 5.961 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.292 1.292 23 H -0.294 1.294 24 C -0.111 4.111 25 C 0.120 3.880 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.381 0.619 42 H 0.018 0.982 43 H 0.026 0.974 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.657 -2.916 12.849 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.117 4.117 3 C -0.172 4.172 4 C -0.047 4.047 5 C -0.210 4.210 6 C -0.175 4.175 7 C 0.312 3.688 8 O -0.462 6.462 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.193 4.193 12 C 0.098 3.902 13 O -0.370 6.370 14 C 0.002 3.998 15 N -0.378 5.378 16 C -0.379 4.379 17 H 0.088 0.912 18 C -0.257 4.257 19 N -0.612 5.612 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.219 1.219 23 H -0.221 1.221 24 C -0.150 4.150 25 C -0.002 4.002 26 H 0.127 0.873 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.211 0.789 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.429 -3.841 13.712 19.573 hybrid contribution -1.116 0.888 -1.226 1.880 sum 12.313 -2.954 12.486 17.783 Atomic orbital electron populations 1.24148 0.96101 1.02654 1.01621 1.21511 0.94678 0.94964 1.00541 1.20892 1.00674 0.92412 1.03189 1.19903 0.94788 0.90268 0.99766 1.22258 0.98545 1.03773 0.96468 1.21592 0.99803 1.02635 0.93474 1.21012 0.80875 0.86859 0.80095 1.90640 1.69966 1.41677 1.43878 1.48170 1.36379 1.28132 1.20399 1.22159 0.97718 0.91328 0.90420 1.22530 0.95459 0.97993 1.03337 1.21226 0.91622 0.90941 0.86455 1.86375 1.89315 1.40493 1.20838 1.21423 0.96113 0.92170 0.90095 1.42357 1.09149 1.51759 1.34575 1.19565 0.90082 1.18415 1.09841 0.91246 1.25412 0.99455 1.01711 0.99150 1.69760 1.24608 1.42119 1.24674 0.85173 0.79549 0.77975 0.77630 1.19596 1.21902 1.22094 1.21817 0.97764 0.99411 0.95962 1.21444 0.86990 0.89582 1.02207 0.87293 0.89022 0.90389 0.89821 0.91332 0.88524 0.92102 0.90605 0.93451 0.92562 0.89183 0.86414 0.90884 0.91008 0.89661 0.77001 0.96386 0.95597 0.78898 0.93877 0.89497 0.90063 0.90878 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.63 9.54 67.78 0.65 -3.99 16 2 C -0.12 -2.19 3.28 -16.49 -0.05 -2.24 16 3 C -0.12 -1.56 9.77 71.24 0.70 -0.86 16 4 C -0.04 -0.88 0.61 -53.67 -0.03 -0.91 16 5 C -0.15 -2.38 7.71 71.98 0.55 -1.82 16 6 C -0.12 -2.18 7.70 71.98 0.55 -1.63 16 7 C 0.52 14.00 5.21 87.66 0.46 14.45 16 8 O -0.58 -19.50 15.33 -3.04 -0.05 -19.54 16 9 N -0.60 -15.24 1.96 -819.75 -1.60 -16.84 16 10 C 0.11 2.50 3.74 86.22 0.32 2.82 16 11 C -0.15 -4.37 4.43 30.53 0.14 -4.23 16 12 C 0.14 4.26 0.71 -10.77 -0.01 4.25 16 13 O -0.56 -18.18 11.71 -148.98 -1.74 -19.93 16 14 C 0.13 4.97 5.40 86.38 0.47 5.44 16 15 N -0.73 -34.58 5.07 -343.45 -1.74 -36.32 16 16 C -0.25 -13.28 9.99 84.03 0.84 -12.45 16 17 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 18 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 19 N -0.96 -55.36 13.06 21.65 0.28 -55.07 16 20 Si 0.97 44.73 29.55 68.60 2.03 46.75 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 C -0.11 -2.99 5.11 30.67 0.16 -2.83 16 25 C 0.12 3.19 6.19 86.36 0.53 3.72 16 26 H 0.11 2.30 8.05 -2.91 -0.02 2.28 16 27 H 0.09 2.38 4.60 -2.91 -0.01 2.37 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.86 6.40 -2.39 -0.02 0.85 16 30 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 31 H 0.10 1.02 6.85 -2.39 -0.02 1.01 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.20 4.86 -2.39 -0.01 1.19 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.14 7.94 -2.39 -0.02 1.12 16 36 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 37 H 0.12 2.42 2.95 -2.39 -0.01 2.41 16 38 H 0.07 1.74 7.81 -2.38 -0.02 1.73 16 39 H 0.07 2.32 6.82 -2.39 -0.02 2.30 16 40 H 0.09 2.41 5.16 -2.39 -0.01 2.39 16 41 H 0.38 12.53 7.85 -74.06 -0.58 11.95 16 42 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.38 18.14 5.58 -92.71 -0.52 17.62 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.07 1.98 7.81 -2.39 -0.02 1.96 16 49 H 0.08 2.30 7.02 -2.39 -0.02 2.29 16 Total: -1.00 -64.58 361.86 2.78 -61.80 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -0.13 Total: 42.48 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.74 Total: -3.33 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -3.06 Total: -108.23 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.79 Total: -39.47 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.58 2.78 -61.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755151739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.335 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds