Wall clock time and date at job start Tue Mar 31 2020 10:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46778 * 2 1 4 4 C 1.50696 * 109.46735 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00441 * 0.02562 * 4 3 2 6 6 N 1.34787 * 119.99565 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.62888 * 180.02562 * 6 4 3 8 8 C 1.53194 * 108.89108 * 126.45936 * 7 6 4 9 9 C 1.53044 * 109.30996 * 54.56643 * 8 7 6 10 10 C 1.50700 * 109.45710 * 178.62362 * 9 8 7 11 11 O 1.21279 * 120.00011 * 12.20821 * 10 9 8 12 12 N 1.34773 * 119.99948 * 192.20251 * 10 9 8 13 13 C 1.46500 * 120.00222 * 186.17058 * 12 10 9 14 14 C 1.53006 * 109.47304 * 84.54684 * 13 12 10 15 15 C 1.46497 * 120.00172 * 6.16581 * 12 10 9 16 16 C 1.50702 * 109.46890 * 84.77368 * 15 12 10 17 17 H 1.08004 * 120.00165 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00091 * 180.02562 * 16 15 12 19 19 N 1.31519 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00176 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47295 * 89.99928 * 20 18 16 22 22 H 1.48503 * 109.47353 * 209.99758 * 20 18 16 23 23 H 1.48501 * 109.47436 * 330.00304 * 20 18 16 24 24 C 1.53042 * 109.53868 * 298.62938 * 9 8 7 25 25 C 1.46961 * 120.65239 * 359.81699 * 6 4 3 26 26 H 1.08993 * 109.47633 * 300.00050 * 1 2 3 27 27 H 1.09002 * 109.47278 * 60.00318 * 1 2 3 28 28 H 1.09007 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47274 * 240.00308 * 2 1 3 30 30 H 1.09002 * 109.47278 * 119.99682 * 2 1 3 31 31 H 1.08993 * 109.47080 * 59.99611 * 3 2 1 32 32 H 1.09002 * 109.46957 * 299.99879 * 3 2 1 33 33 H 1.08997 * 109.58274 * 6.60349 * 7 6 4 34 34 H 1.09000 * 109.58325 * 246.31964 * 7 6 4 35 35 H 1.09001 * 109.49588 * 174.51264 * 8 7 6 36 36 H 1.08991 * 109.49879 * 294.58299 * 8 7 6 37 37 H 1.09002 * 109.46003 * 58.64994 * 9 8 7 38 38 H 1.08999 * 109.47081 * 204.55269 * 13 12 10 39 39 H 1.08999 * 109.46867 * 324.54949 * 13 12 10 40 40 H 1.08999 * 109.47023 * 300.00460 * 14 13 12 41 41 H 1.09001 * 109.46242 * 60.00542 * 14 13 12 42 42 H 1.09002 * 109.46980 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.47599 * 204.77444 * 15 12 10 44 44 H 1.08998 * 109.47424 * 324.77590 * 15 12 10 45 45 H 0.97000 * 119.99832 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.49558 * 181.31699 * 24 9 8 47 47 H 1.09004 * 109.49662 * 301.41963 * 24 9 8 48 48 H 1.09002 * 109.46243 * 113.75329 * 25 6 4 49 49 H 1.08995 * 109.71431 * 353.46801 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6099 0.0002 7 6 5.6900 2.6261 0.0003 8 6 6.1765 3.4925 -1.1658 9 6 5.5327 4.8776 -1.0701 10 6 6.0351 5.7435 -2.1966 11 8 6.6483 5.2458 -3.1169 12 7 5.8029 7.0710 -2.1812 13 6 6.1707 7.8924 -3.3371 14 6 5.0467 7.8462 -4.3742 15 6 5.1825 7.6926 -1.0087 16 6 6.2441 8.0077 0.0135 17 1 7.2776 7.7692 -0.1901 18 6 5.8960 8.6005 1.2087 19 7 4.6374 8.8905 1.4569 20 14 7.2119 8.9917 2.4755 21 1 7.7385 10.3595 2.2360 22 1 6.6250 8.9187 3.8377 23 1 8.3184 8.0081 2.3598 24 6 4.0115 4.7431 -1.1703 25 6 3.5004 3.8909 -0.0049 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 6.0665 1.6101 -0.1174 34 1 6.0507 3.0430 0.9406 35 1 7.2609 3.5912 -1.1179 36 1 5.8950 3.0243 -2.1089 37 1 5.7948 5.3348 -0.1159 38 1 6.3268 8.9223 -3.0161 39 1 7.0892 7.5066 -3.7795 40 1 4.8907 6.8163 -4.6952 41 1 4.1283 8.2321 -3.9317 42 1 5.3202 8.4578 -5.2340 43 1 4.6815 8.6133 -1.3078 44 1 4.4541 7.0066 -0.5764 45 1 4.3925 9.3078 2.2976 46 1 3.5551 5.7319 -1.1256 47 1 3.7500 4.2634 -2.1135 48 1 3.6802 4.4124 0.9352 49 1 2.4320 3.7114 -0.1246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103210481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:14 Heat of formation + Delta-G solvation = -96.664743 kcal Electronic energy + Delta-G solvation = -27239.323683 eV Core-core repulsion = 23586.389538 eV Total energy + Delta-G solvation = -3652.934145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.32516 -39.24478 -36.93324 -35.24821 -34.51539 -33.08889 -32.60576 -31.18281 -30.23292 -28.16146 -27.06842 -25.66171 -23.38672 -23.04179 -22.73702 -21.89588 -20.53695 -18.92104 -18.19714 -17.04781 -16.70211 -16.17826 -15.96037 -15.81351 -15.42070 -14.60723 -14.55180 -14.44443 -14.01345 -13.80987 -13.58990 -13.35675 -13.02823 -12.85801 -12.76282 -12.31174 -12.25386 -12.06840 -11.99467 -11.83604 -11.62566 -11.50106 -11.41747 -11.29350 -11.04344 -10.99829 -10.87034 -10.79278 -10.53560 -10.39764 -10.31149 -10.10294 -9.78685 -9.65619 -9.01523 -8.63576 -8.47868 -7.74448 -6.25703 -4.32859 2.70278 3.07521 3.17759 3.25675 3.28190 3.38920 3.90783 4.28107 4.49330 4.74347 4.86797 4.91524 5.02475 5.08192 5.14001 5.24352 5.29486 5.35859 5.48638 5.49507 5.51352 5.55800 5.64995 5.71658 5.77316 5.83153 5.86842 5.87423 5.97244 6.01786 6.07196 6.09048 6.16817 6.18915 6.21576 6.33649 6.40757 6.57931 6.65630 6.67292 6.75942 7.13667 7.49282 7.51763 7.70630 7.99841 8.24897 8.31052 8.73454 9.00706 9.35620 10.80461 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004099 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.160909 B = 6829.818150 C = 7792.917709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.513 3.487 5 O -0.551 6.551 6 N -0.609 5.609 7 C 0.111 3.889 8 C -0.110 4.110 9 C -0.105 4.105 10 C 0.524 3.476 11 O -0.575 6.575 12 N -0.597 5.597 13 C 0.114 3.886 14 C -0.163 4.163 15 C 0.232 3.768 16 C -0.539 4.539 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.124 4.124 25 C 0.109 3.891 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.265 0.735 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -8.781 -2.663 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.302 3.698 5 O -0.429 6.429 6 N -0.343 5.343 7 C -0.011 4.011 8 C -0.148 4.148 9 C -0.127 4.127 10 C 0.312 3.688 11 O -0.456 6.456 12 N -0.327 5.327 13 C -0.009 4.009 14 C -0.221 4.221 15 C 0.113 3.887 16 C -0.577 4.577 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.162 4.162 25 C -0.014 4.014 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.807 -9.472 -2.984 12.040 hybrid contribution 0.673 0.762 0.850 1.325 sum -6.134 -8.710 -2.134 10.865 Atomic orbital electron populations 1.21797 0.95585 1.01796 1.01836 1.21279 0.95126 0.94863 1.03408 1.21756 0.92098 0.99925 1.04339 1.20729 0.90319 0.83127 0.75616 1.90662 1.70524 1.31056 1.50647 1.48222 1.07205 1.06073 1.72778 1.21654 0.79080 1.01626 0.98768 1.21690 1.00776 0.93952 0.98432 1.21250 0.95719 0.95259 1.00431 1.20365 0.78983 0.82734 0.86709 1.90579 1.42643 1.74188 1.38225 1.48249 1.60094 1.06507 1.17838 1.21225 0.97342 0.95697 0.86670 1.22113 0.99570 1.01650 0.98770 1.19574 0.93641 0.94081 0.81452 1.21520 0.94392 1.40937 1.00895 0.92190 1.24914 0.95505 0.95140 0.98067 1.69911 1.16075 1.41859 1.25000 0.86550 0.81768 0.78984 0.80543 1.20524 1.21026 1.19738 1.21927 0.94727 1.01284 0.98301 1.21806 0.96273 0.83520 0.99798 0.92658 0.92667 0.92552 0.91365 0.91361 0.88876 0.88896 0.89095 0.91235 0.90439 0.91190 0.86823 0.90545 0.91389 0.92874 0.92674 0.92454 0.94732 0.93712 0.92507 0.88887 0.91774 0.90195 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.11 -1.08 5.22 -26.73 -0.14 -1.22 16 3 C -0.14 -1.43 4.05 -27.88 -0.11 -1.54 16 4 C 0.51 7.16 7.70 -10.98 -0.08 7.08 16 5 O -0.55 -9.51 15.39 5.56 0.09 -9.42 16 6 N -0.61 -8.36 2.98 -172.76 -0.51 -8.87 16 7 C 0.11 1.60 6.43 -3.71 -0.02 1.58 16 8 C -0.11 -1.75 4.71 -26.61 -0.13 -1.87 16 9 C -0.11 -1.81 1.65 -91.73 -0.15 -1.96 16 10 C 0.52 10.51 6.82 -10.99 -0.07 10.43 16 11 O -0.58 -12.77 15.65 5.56 0.09 -12.68 16 12 N -0.60 -11.98 2.48 -175.06 -0.43 -12.41 16 13 C 0.11 2.05 6.10 -4.04 -0.02 2.03 16 14 C -0.16 -2.48 10.20 37.16 0.38 -2.10 16 15 C 0.23 5.11 4.70 -5.19 -0.02 5.08 16 16 C -0.54 -13.31 8.76 -34.44 -0.30 -13.61 16 17 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 18 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -23.06 13.29 55.43 0.74 -22.32 16 20 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.12 -1.81 5.04 -26.63 -0.13 -1.94 16 25 C 0.11 1.35 6.33 -3.71 -0.02 1.33 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.09 0.80 7.95 -51.93 -0.41 0.38 16 32 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 33 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 37 H 0.11 2.15 6.99 -51.93 -0.36 1.78 16 38 H 0.08 1.34 8.03 -51.93 -0.42 0.93 16 39 H 0.07 1.25 7.51 -51.93 -0.39 0.86 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 44 H 0.05 0.97 4.59 -51.93 -0.24 0.73 16 45 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 46 H 0.09 1.42 5.86 -51.93 -0.30 1.12 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.09 0.83 5.95 -51.93 -0.31 0.52 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -29.44 385.10 -8.47 -37.91 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.64 Total: 3.13 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.57 Total: 4.06 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.21 Total: -43.61 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.17 Total: -22.11 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.44 -8.47 -37.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.753 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds