Wall clock time and date at job start Tue Mar 31 2020 10:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46778 * 2 1 4 4 C 1.50696 * 109.46735 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00441 * 0.02562 * 4 3 2 6 6 N 1.34787 * 119.99565 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.62888 * 180.02562 * 6 4 3 8 8 C 1.53194 * 108.89108 * 126.45936 * 7 6 4 9 9 C 1.53044 * 109.30996 * 54.56643 * 8 7 6 10 10 C 1.50700 * 109.45710 * 178.62362 * 9 8 7 11 11 O 1.21279 * 120.00011 * 12.20821 * 10 9 8 12 12 N 1.34773 * 119.99948 * 192.20251 * 10 9 8 13 13 C 1.46500 * 120.00222 * 186.17058 * 12 10 9 14 14 C 1.53006 * 109.47304 * 84.54684 * 13 12 10 15 15 C 1.46497 * 120.00172 * 6.16581 * 12 10 9 16 16 C 1.50702 * 109.46890 * 84.77368 * 15 12 10 17 17 H 1.08004 * 120.00165 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00091 * 180.02562 * 16 15 12 19 19 N 1.31519 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00176 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47295 * 89.99928 * 20 18 16 22 22 H 1.48503 * 109.47353 * 209.99758 * 20 18 16 23 23 H 1.48501 * 109.47436 * 330.00304 * 20 18 16 24 24 C 1.53042 * 109.53868 * 298.62938 * 9 8 7 25 25 C 1.46961 * 120.65239 * 359.81699 * 6 4 3 26 26 H 1.08993 * 109.47633 * 300.00050 * 1 2 3 27 27 H 1.09002 * 109.47278 * 60.00318 * 1 2 3 28 28 H 1.09007 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47274 * 240.00308 * 2 1 3 30 30 H 1.09002 * 109.47278 * 119.99682 * 2 1 3 31 31 H 1.08993 * 109.47080 * 59.99611 * 3 2 1 32 32 H 1.09002 * 109.46957 * 299.99879 * 3 2 1 33 33 H 1.08997 * 109.58274 * 6.60349 * 7 6 4 34 34 H 1.09000 * 109.58325 * 246.31964 * 7 6 4 35 35 H 1.09001 * 109.49588 * 174.51264 * 8 7 6 36 36 H 1.08991 * 109.49879 * 294.58299 * 8 7 6 37 37 H 1.09002 * 109.46003 * 58.64994 * 9 8 7 38 38 H 1.08999 * 109.47081 * 204.55269 * 13 12 10 39 39 H 1.08999 * 109.46867 * 324.54949 * 13 12 10 40 40 H 1.08999 * 109.47023 * 300.00460 * 14 13 12 41 41 H 1.09001 * 109.46242 * 60.00542 * 14 13 12 42 42 H 1.09002 * 109.46980 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.47599 * 204.77444 * 15 12 10 44 44 H 1.08998 * 109.47424 * 324.77590 * 15 12 10 45 45 H 0.97000 * 119.99832 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.49558 * 181.31699 * 24 9 8 47 47 H 1.09004 * 109.49662 * 301.41963 * 24 9 8 48 48 H 1.09002 * 109.46243 * 113.75329 * 25 6 4 49 49 H 1.08995 * 109.71431 * 353.46801 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6099 0.0002 7 6 5.6900 2.6261 0.0003 8 6 6.1765 3.4925 -1.1658 9 6 5.5327 4.8776 -1.0701 10 6 6.0351 5.7435 -2.1966 11 8 6.6483 5.2458 -3.1169 12 7 5.8029 7.0710 -2.1812 13 6 6.1707 7.8924 -3.3371 14 6 5.0467 7.8462 -4.3742 15 6 5.1825 7.6926 -1.0087 16 6 6.2441 8.0077 0.0135 17 1 7.2776 7.7692 -0.1901 18 6 5.8960 8.6005 1.2087 19 7 4.6374 8.8905 1.4569 20 14 7.2119 8.9917 2.4755 21 1 7.7385 10.3595 2.2360 22 1 6.6250 8.9187 3.8377 23 1 8.3184 8.0081 2.3598 24 6 4.0115 4.7431 -1.1703 25 6 3.5004 3.8909 -0.0049 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 6.0665 1.6101 -0.1174 34 1 6.0507 3.0430 0.9406 35 1 7.2609 3.5912 -1.1179 36 1 5.8950 3.0243 -2.1089 37 1 5.7948 5.3348 -0.1159 38 1 6.3268 8.9223 -3.0161 39 1 7.0892 7.5066 -3.7795 40 1 4.8907 6.8163 -4.6952 41 1 4.1283 8.2321 -3.9317 42 1 5.3202 8.4578 -5.2340 43 1 4.6815 8.6133 -1.3078 44 1 4.4541 7.0066 -0.5764 45 1 4.3925 9.3078 2.2976 46 1 3.5551 5.7319 -1.1256 47 1 3.7500 4.2634 -2.1135 48 1 3.6802 4.4124 0.9352 49 1 2.4320 3.7114 -0.1246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103210481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:13 Heat of formation + Delta-G solvation = -111.997439 kcal Electronic energy + Delta-G solvation = -27239.988559 eV Core-core repulsion = 23586.389538 eV Total energy + Delta-G solvation = -3653.599021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59548 -40.65019 -38.18486 -36.92144 -35.33604 -34.75829 -34.07460 -32.39346 -31.64737 -29.08123 -28.81102 -26.87020 -24.95729 -24.46729 -24.01671 -22.85547 -21.69948 -20.12633 -19.62658 -18.65274 -18.12849 -17.78156 -17.08477 -16.93093 -16.79965 -16.27852 -16.08564 -15.54878 -15.15446 -15.00455 -14.93263 -14.49690 -14.41730 -14.13724 -13.90518 -13.79797 -13.44927 -13.41833 -13.16555 -13.09809 -12.90109 -12.81986 -12.67659 -12.62183 -12.56161 -12.22816 -12.13497 -11.97593 -11.81333 -11.71215 -11.66262 -11.59668 -11.51426 -10.80728 -10.66391 -10.46057 -9.67440 -9.42991 -8.18109 -6.30871 1.40923 1.45323 1.52545 1.62985 1.77878 2.01094 2.33188 2.47416 3.12127 3.49815 3.66902 3.76058 3.85430 4.00640 4.08468 4.13610 4.16910 4.31869 4.34224 4.40468 4.47648 4.54553 4.59495 4.65974 4.72585 4.75225 4.78152 4.80775 4.81475 4.85516 4.88106 4.96495 5.03966 5.05989 5.07827 5.24844 5.25954 5.30737 5.32632 5.37334 5.47295 5.54397 5.69841 5.91235 6.11424 6.42672 6.59421 6.85252 7.16672 7.33281 7.44876 8.86475 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004099 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.160909 B = 6829.818150 C = 7792.917709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.508 3.492 5 O -0.590 6.590 6 N -0.610 5.610 7 C 0.116 3.884 8 C -0.099 4.099 9 C -0.101 4.101 10 C 0.518 3.482 11 O -0.600 6.600 12 N -0.599 5.599 13 C 0.106 3.894 14 C -0.150 4.150 15 C 0.247 3.753 16 C -0.549 4.549 17 H 0.044 0.956 18 C 0.032 3.968 19 N -0.910 5.910 20 Si 0.945 3.055 21 H -0.279 1.279 22 H -0.278 1.278 23 H -0.276 1.276 24 C -0.117 4.117 25 C 0.113 3.887 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.021 0.979 44 H 0.051 0.949 45 H 0.268 0.732 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -8.514 -2.254 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.175 4.175 4 C 0.298 3.702 5 O -0.471 6.471 6 N -0.343 5.343 7 C -0.007 4.007 8 C -0.138 4.138 9 C -0.122 4.122 10 C 0.307 3.693 11 O -0.483 6.483 12 N -0.329 5.329 13 C -0.017 4.017 14 C -0.208 4.208 15 C 0.126 3.874 16 C -0.587 4.587 17 H 0.062 0.938 18 C -0.169 4.169 19 N -0.549 5.549 20 Si 0.772 3.228 21 H -0.205 1.205 22 H -0.204 1.204 23 H -0.201 1.201 24 C -0.155 4.155 25 C -0.009 4.009 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.439 -9.181 -2.580 12.734 hybrid contribution 1.237 0.704 0.676 1.576 sum -7.202 -8.478 -1.903 11.285 Atomic orbital electron populations 1.21758 0.93522 1.02413 1.02767 1.21255 0.96812 0.94565 1.01966 1.21842 0.88818 1.00498 1.06384 1.21482 0.91938 0.82326 0.74403 1.90646 1.71655 1.32406 1.52389 1.48310 1.06778 1.06743 1.72467 1.21519 0.80155 1.00801 0.98244 1.21568 1.00228 0.93468 0.98550 1.21233 0.97805 0.94989 0.98215 1.20861 0.78468 0.82867 0.87084 1.90560 1.43764 1.74524 1.39450 1.48298 1.59849 1.06820 1.17957 1.21401 0.98201 0.95324 0.86732 1.21999 0.98506 1.01561 0.98769 1.19304 0.92992 0.93634 0.81451 1.21653 0.94174 1.41057 1.01831 0.93815 1.25453 0.97010 0.95055 0.99408 1.69964 1.17100 1.42304 1.25525 0.85752 0.79707 0.78478 0.78904 1.20465 1.20365 1.20067 1.21874 0.92465 1.01577 0.99625 1.21890 0.98014 0.82377 0.98577 0.91627 0.91755 0.92216 0.93000 0.92782 0.86502 0.86778 0.89763 0.90614 0.91322 0.92307 0.88453 0.90424 0.92248 0.93927 0.92346 0.89700 0.96043 0.93106 0.92264 0.89384 0.91378 0.90329 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.11 -1.97 5.22 30.60 0.16 -1.81 16 3 C -0.14 -2.37 4.05 29.85 0.12 -2.25 16 4 C 0.51 13.47 7.70 87.65 0.67 14.14 16 5 O -0.59 -20.31 15.39 -3.03 -0.05 -20.36 16 6 N -0.61 -15.88 2.98 -818.87 -2.44 -18.32 16 7 C 0.12 3.32 6.43 86.36 0.56 3.87 16 8 C -0.10 -3.19 4.71 30.67 0.14 -3.05 16 9 C -0.10 -3.47 1.65 -11.51 -0.02 -3.49 16 10 C 0.52 20.92 6.82 87.66 0.60 21.52 16 11 O -0.60 -26.97 15.65 -3.03 -0.05 -27.02 16 12 N -0.60 -24.13 2.48 -826.16 -2.05 -26.18 16 13 C 0.11 3.79 6.10 86.38 0.53 4.32 16 14 C -0.15 -4.39 10.20 71.98 0.73 -3.66 16 15 C 0.25 10.82 4.70 85.63 0.40 11.22 16 16 C -0.55 -27.09 8.76 25.60 0.22 -26.87 16 17 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 18 C 0.03 1.59 5.46 84.65 0.46 2.05 16 19 N -0.91 -46.34 13.29 21.45 0.28 -46.06 16 20 Si 0.95 40.17 29.54 68.60 2.03 42.20 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 24 C -0.12 -3.26 5.04 30.66 0.15 -3.10 16 25 C 0.11 2.55 6.33 86.34 0.55 3.09 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.05 1.12 8.10 -2.39 -0.02 1.11 16 31 H 0.12 1.53 7.95 -2.39 -0.02 1.51 16 32 H 0.11 1.55 7.69 -2.39 -0.02 1.54 16 33 H 0.08 2.55 7.00 -2.39 -0.02 2.53 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 2.01 8.01 -2.39 -0.02 1.99 16 37 H 0.10 3.70 6.99 -2.39 -0.02 3.68 16 38 H 0.08 2.71 8.03 -2.39 -0.02 2.70 16 39 H 0.06 2.21 7.51 -2.39 -0.02 2.19 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.02 1.00 8.03 -2.39 -0.02 0.98 16 44 H 0.05 2.18 4.59 -2.39 -0.01 2.17 16 45 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 46 H 0.09 2.57 5.86 -2.39 -0.01 2.56 16 47 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.12 1.88 5.95 -2.39 -0.01 1.86 16 Total: -1.00 -63.05 385.10 4.63 -58.42 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.91 Total: 22.48 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 6.00 Total: 14.84 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -4.21 Total: -90.56 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.09 Total: -47.37 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -63.05 4.63 -58.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.578 kcal (2) G-P(sol) polarization free energy of solvation -63.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds