Wall clock time and date at job start Tue Mar 31 2020 10:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 C 1.50696 * 109.47348 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99552 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00164 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63290 * 180.02562 * 6 4 3 8 8 C 1.53187 * 108.89473 * 126.46069 * 7 6 4 9 9 C 1.53047 * 109.30907 * 54.56907 * 8 7 6 10 10 C 1.50700 * 109.45680 * 178.61378 * 9 8 7 11 11 O 1.21282 * 120.00065 * 10.56456 * 10 9 8 12 12 N 1.34780 * 120.00053 * 190.57152 * 10 9 8 13 13 C 1.46496 * 120.00319 * 183.79617 * 12 10 9 14 14 C 1.46501 * 119.99623 * 3.78967 * 12 10 9 15 15 H 1.08997 * 109.47595 * 354.29238 * 14 12 10 16 16 C 1.53006 * 109.46720 * 114.29110 * 14 12 10 17 17 C 1.50696 * 109.47380 * 234.29022 * 14 12 10 18 18 H 1.08006 * 119.99524 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00254 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99675 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00079 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46982 * 89.99791 * 21 19 17 23 23 H 1.48500 * 109.46871 * 209.99939 * 21 19 17 24 24 H 1.48499 * 109.46892 * 329.99906 * 21 19 17 25 25 C 1.53041 * 109.53509 * 298.62894 * 9 8 7 26 26 C 1.46961 * 120.65206 * 359.82046 * 6 4 3 27 27 H 1.09002 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47653 * 300.00288 * 1 2 3 29 29 H 1.08997 * 109.47083 * 60.00601 * 1 2 3 30 30 H 1.08997 * 109.47276 * 239.99509 * 2 1 3 31 31 H 1.09008 * 109.46656 * 119.99250 * 2 1 3 32 32 H 1.09003 * 109.47122 * 59.99387 * 3 2 1 33 33 H 1.09006 * 109.46558 * 299.99680 * 3 2 1 34 34 H 1.09003 * 109.58284 * 6.60216 * 7 6 4 35 35 H 1.09003 * 109.58633 * 246.32784 * 7 6 4 36 36 H 1.09004 * 109.49857 * 174.51486 * 8 7 6 37 37 H 1.08993 * 109.49970 * 294.61623 * 8 7 6 38 38 H 1.09000 * 109.46046 * 58.64058 * 9 8 7 39 39 H 1.09003 * 109.47261 * 84.99527 * 13 12 10 40 40 H 1.08993 * 109.47247 * 205.00398 * 13 12 10 41 41 H 1.09000 * 109.46754 * 325.00006 * 13 12 10 42 42 H 1.08997 * 109.46982 * 59.99753 * 16 14 12 43 43 H 1.09002 * 109.46947 * 179.97438 * 16 14 12 44 44 H 1.09000 * 109.46834 * 299.99748 * 16 14 12 45 45 H 0.97005 * 119.99582 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.49593 * 181.32195 * 25 9 8 47 47 H 1.09001 * 109.49996 * 301.38531 * 25 9 8 48 48 H 1.09008 * 109.46668 * 113.75339 * 26 6 4 49 49 H 1.08994 * 109.71648 * 353.46273 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1533 0.3922 0.0006 6 7 4.2208 2.6098 0.0002 7 6 5.6900 2.6260 0.0003 8 6 6.1765 3.4923 -1.1657 9 6 5.5328 4.8775 -1.0700 10 6 6.0355 5.7435 -2.1962 11 8 6.6745 5.2506 -3.1015 12 7 5.7750 7.0659 -2.1974 13 6 6.1912 7.8935 -3.3323 14 6 5.0756 7.6756 -1.0637 15 1 4.7588 6.8965 -0.3705 16 6 6.0165 8.6453 -0.3457 17 6 3.8674 8.4252 -1.5630 18 1 3.6427 8.4450 -2.6193 19 6 3.0488 9.0857 -0.6716 20 7 3.3221 9.0610 0.6146 21 14 1.5515 10.0154 -1.2907 22 1 0.3779 9.1058 -1.3118 23 1 1.2731 11.1619 -0.3890 24 1 1.8134 10.5175 -2.6635 25 6 4.0116 4.7430 -1.1702 26 6 3.5005 3.8907 -0.0048 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 6.0666 1.6099 -0.1174 35 1 6.0508 3.0427 0.9407 36 1 7.2610 3.5911 -1.1178 37 1 5.8946 3.0245 -2.1089 38 1 5.7947 5.3345 -0.1157 39 1 5.4311 7.8492 -4.1124 40 1 6.3148 8.9253 -3.0036 41 1 7.1373 7.5216 -3.7254 42 1 6.3333 9.4245 -1.0389 43 1 5.4960 9.0993 0.4975 44 1 6.8904 8.1030 0.0155 45 1 2.7459 9.5254 1.2418 46 1 3.5552 5.7318 -1.1256 47 1 3.7501 4.2639 -2.1137 48 1 3.6803 4.4123 0.9353 49 1 2.4321 3.7114 -0.1246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:21 Heat of formation + Delta-G solvation = -90.389800 kcal Electronic energy + Delta-G solvation = -27410.729238 eV Core-core repulsion = 23758.067195 eV Total energy + Delta-G solvation = -3652.662043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35858 -39.26800 -36.91434 -35.65197 -34.49882 -32.80744 -32.71993 -31.07884 -29.24859 -28.22276 -27.01960 -25.40756 -24.81133 -23.15115 -22.14567 -21.49071 -20.61633 -18.95367 -18.23133 -17.05645 -16.60542 -16.26579 -15.94724 -15.82596 -15.15225 -14.75458 -14.54038 -14.37417 -14.02055 -13.69675 -13.47113 -13.25973 -12.97186 -12.81899 -12.78644 -12.30751 -12.07704 -12.02015 -11.82171 -11.72214 -11.54435 -11.36286 -11.27903 -11.14950 -11.06526 -10.93643 -10.84503 -10.78527 -10.52229 -10.38889 -10.27304 -10.21422 -9.66833 -9.40645 -9.00856 -8.64174 -8.50562 -7.68439 -6.27279 -4.35804 2.69660 3.06444 3.14638 3.23365 3.25385 3.32899 3.92134 4.24253 4.50492 4.76564 4.89061 4.91365 5.01668 5.04971 5.10655 5.22733 5.29754 5.38638 5.45906 5.48198 5.52262 5.62344 5.67194 5.81573 5.87651 5.88884 5.93713 6.03229 6.03953 6.15578 6.19724 6.21441 6.25587 6.36390 6.44866 6.51129 6.58163 6.68219 6.68995 6.89068 7.11752 7.33426 7.47738 7.58350 7.76280 8.02704 8.24039 8.40735 8.67521 8.96122 9.33331 10.77153 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.004390 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.678063 B = 6376.326563 C = 7907.223546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.514 3.486 5 O -0.551 6.551 6 N -0.611 5.611 7 C 0.112 3.888 8 C -0.111 4.111 9 C -0.100 4.100 10 C 0.512 3.488 11 O -0.575 6.575 12 N -0.591 5.591 13 C 0.099 3.901 14 C 0.250 3.750 15 H 0.059 0.941 16 C -0.153 4.153 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.069 3.931 20 N -0.886 5.886 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.131 4.131 26 C 0.109 3.891 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.095 0.905 44 H 0.012 0.988 45 H 0.265 0.735 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -9.151 1.694 9.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.182 4.182 4 C 0.303 3.697 5 O -0.430 6.430 6 N -0.344 5.344 7 C -0.011 4.011 8 C -0.150 4.150 9 C -0.122 4.122 10 C 0.300 3.700 11 O -0.456 6.456 12 N -0.321 5.321 13 C -0.045 4.045 14 C 0.149 3.851 15 H 0.077 0.923 16 C -0.212 4.212 17 C -0.568 4.568 18 H 0.080 0.920 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.723 3.277 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.170 4.170 26 C -0.013 4.013 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.113 0.887 44 H 0.031 0.969 45 H 0.075 0.925 46 H 0.130 0.870 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.968 -9.837 1.419 10.132 hybrid contribution -0.873 1.014 -0.258 1.363 sum -2.841 -8.823 1.160 9.341 Atomic orbital electron populations 1.21799 0.95570 1.01778 1.01901 1.21275 0.95154 0.94836 1.03353 1.21765 0.92027 0.99942 1.04464 1.20737 0.90359 0.83094 0.75500 1.90659 1.70547 1.31069 1.50684 1.48251 1.07083 1.06240 1.72845 1.21626 0.79346 1.01677 0.98430 1.21715 1.00563 0.93920 0.98791 1.21200 0.96721 0.95321 0.98934 1.20455 0.79652 0.82805 0.87120 1.90592 1.42104 1.73948 1.38982 1.48269 1.55876 1.06769 1.21218 1.21325 0.98751 0.95437 0.88944 1.19174 0.89775 0.93075 0.83053 0.92304 1.22159 0.97307 0.99495 1.02223 1.21315 1.08565 1.32677 0.94209 0.91982 1.24859 0.97820 0.95934 0.94774 1.69853 1.38194 1.43038 1.01348 0.86525 0.82731 0.79550 0.78850 1.20512 1.21105 1.19870 1.22031 0.93931 1.02759 0.98245 1.21822 0.96564 0.83262 0.99668 0.92562 0.92653 0.92619 0.91375 0.91401 0.88850 0.88783 0.89040 0.91484 0.90498 0.90907 0.88679 0.93787 0.91109 0.92708 0.94871 0.88664 0.96935 0.92519 0.87026 0.91625 0.90480 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.11 -1.10 5.22 -26.73 -0.14 -1.24 16 3 C -0.14 -1.49 4.05 -27.88 -0.11 -1.60 16 4 C 0.51 7.18 7.70 -10.99 -0.08 7.10 16 5 O -0.55 -9.44 15.39 5.56 0.09 -9.35 16 6 N -0.61 -8.24 2.98 -172.76 -0.51 -8.76 16 7 C 0.11 1.51 6.43 -3.71 -0.02 1.49 16 8 C -0.11 -1.67 4.69 -26.61 -0.12 -1.80 16 9 C -0.10 -1.65 1.62 -91.73 -0.15 -1.80 16 10 C 0.51 10.16 6.93 -10.98 -0.08 10.08 16 11 O -0.57 -12.74 15.64 5.56 0.09 -12.65 16 12 N -0.59 -12.00 2.75 -175.26 -0.48 -12.48 16 13 C 0.10 1.87 9.36 59.84 0.56 2.43 16 14 C 0.25 5.35 1.71 -69.08 -0.12 5.23 16 15 H 0.06 1.27 4.47 -51.93 -0.23 1.04 16 16 C -0.15 -3.27 9.04 37.16 0.34 -2.93 16 17 C -0.53 -12.45 7.97 -34.44 -0.27 -12.72 16 18 H 0.06 1.50 7.44 -52.48 -0.39 1.11 16 19 C 0.07 1.65 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -21.68 11.32 55.43 0.63 -21.06 16 21 Si 0.90 19.03 29.54 -169.99 -5.02 14.01 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.13 -2.02 4.97 -26.63 -0.13 -2.15 16 26 C 0.11 1.39 6.33 -3.71 -0.02 1.37 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.07 0.74 8.10 -51.92 -0.42 0.32 16 32 H 0.09 0.84 7.95 -51.93 -0.41 0.42 16 33 H 0.09 0.89 7.69 -51.93 -0.40 0.50 16 34 H 0.09 1.30 7.01 -51.93 -0.36 0.93 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 38 H 0.10 1.55 7.14 -51.93 -0.37 1.18 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.29 6.76 -51.93 -0.35 0.94 16 41 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 42 H 0.03 0.69 6.93 -51.93 -0.36 0.33 16 43 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 46 H 0.11 1.98 5.84 -51.93 -0.30 1.68 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 49 H 0.09 0.93 5.95 -51.93 -0.31 0.62 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -28.05 376.78 -8.03 -36.07 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.40 Total: 4.42 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.09 Total: 4.12 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.37 Total: -42.30 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.17 Total: -22.00 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.05 -8.03 -36.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.318 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds