Wall clock time and date at job start Tue Mar 31 2020 10:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 C 1.50696 * 109.47348 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99552 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00164 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63290 * 180.02562 * 6 4 3 8 8 C 1.53187 * 108.89473 * 126.46069 * 7 6 4 9 9 C 1.53047 * 109.30907 * 54.56907 * 8 7 6 10 10 C 1.50700 * 109.45680 * 178.61378 * 9 8 7 11 11 O 1.21282 * 120.00065 * 10.56456 * 10 9 8 12 12 N 1.34780 * 120.00053 * 190.57152 * 10 9 8 13 13 C 1.46496 * 120.00319 * 183.79617 * 12 10 9 14 14 C 1.46501 * 119.99623 * 3.78967 * 12 10 9 15 15 H 1.08997 * 109.47595 * 354.29238 * 14 12 10 16 16 C 1.53006 * 109.46720 * 114.29110 * 14 12 10 17 17 C 1.50696 * 109.47380 * 234.29022 * 14 12 10 18 18 H 1.08006 * 119.99524 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00254 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99675 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00079 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46982 * 89.99791 * 21 19 17 23 23 H 1.48500 * 109.46871 * 209.99939 * 21 19 17 24 24 H 1.48499 * 109.46892 * 329.99906 * 21 19 17 25 25 C 1.53041 * 109.53509 * 298.62894 * 9 8 7 26 26 C 1.46961 * 120.65206 * 359.82046 * 6 4 3 27 27 H 1.09002 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47653 * 300.00288 * 1 2 3 29 29 H 1.08997 * 109.47083 * 60.00601 * 1 2 3 30 30 H 1.08997 * 109.47276 * 239.99509 * 2 1 3 31 31 H 1.09008 * 109.46656 * 119.99250 * 2 1 3 32 32 H 1.09003 * 109.47122 * 59.99387 * 3 2 1 33 33 H 1.09006 * 109.46558 * 299.99680 * 3 2 1 34 34 H 1.09003 * 109.58284 * 6.60216 * 7 6 4 35 35 H 1.09003 * 109.58633 * 246.32784 * 7 6 4 36 36 H 1.09004 * 109.49857 * 174.51486 * 8 7 6 37 37 H 1.08993 * 109.49970 * 294.61623 * 8 7 6 38 38 H 1.09000 * 109.46046 * 58.64058 * 9 8 7 39 39 H 1.09003 * 109.47261 * 84.99527 * 13 12 10 40 40 H 1.08993 * 109.47247 * 205.00398 * 13 12 10 41 41 H 1.09000 * 109.46754 * 325.00006 * 13 12 10 42 42 H 1.08997 * 109.46982 * 59.99753 * 16 14 12 43 43 H 1.09002 * 109.46947 * 179.97438 * 16 14 12 44 44 H 1.09000 * 109.46834 * 299.99748 * 16 14 12 45 45 H 0.97005 * 119.99582 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.49593 * 181.32195 * 25 9 8 47 47 H 1.09001 * 109.49996 * 301.38531 * 25 9 8 48 48 H 1.09008 * 109.46668 * 113.75339 * 26 6 4 49 49 H 1.08994 * 109.71648 * 353.46273 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1533 0.3922 0.0006 6 7 4.2208 2.6098 0.0002 7 6 5.6900 2.6260 0.0003 8 6 6.1765 3.4923 -1.1657 9 6 5.5328 4.8775 -1.0700 10 6 6.0355 5.7435 -2.1962 11 8 6.6745 5.2506 -3.1015 12 7 5.7750 7.0659 -2.1974 13 6 6.1912 7.8935 -3.3323 14 6 5.0756 7.6756 -1.0637 15 1 4.7588 6.8965 -0.3705 16 6 6.0165 8.6453 -0.3457 17 6 3.8674 8.4252 -1.5630 18 1 3.6427 8.4450 -2.6193 19 6 3.0488 9.0857 -0.6716 20 7 3.3221 9.0610 0.6146 21 14 1.5515 10.0154 -1.2907 22 1 0.3779 9.1058 -1.3118 23 1 1.2731 11.1619 -0.3890 24 1 1.8134 10.5175 -2.6635 25 6 4.0116 4.7430 -1.1702 26 6 3.5005 3.8907 -0.0048 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 6.0666 1.6099 -0.1174 35 1 6.0508 3.0427 0.9407 36 1 7.2610 3.5911 -1.1178 37 1 5.8946 3.0245 -2.1089 38 1 5.7947 5.3345 -0.1157 39 1 5.4311 7.8492 -4.1124 40 1 6.3148 8.9253 -3.0036 41 1 7.1373 7.5216 -3.7254 42 1 6.3333 9.4245 -1.0389 43 1 5.4960 9.0993 0.4975 44 1 6.8904 8.1030 0.0155 45 1 2.7459 9.5254 1.2418 46 1 3.5552 5.7318 -1.1256 47 1 3.7501 4.2639 -2.1137 48 1 3.6803 4.4123 0.9353 49 1 2.4321 3.7114 -0.1246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:20 Heat of formation + Delta-G solvation = -104.600988 kcal Electronic energy + Delta-G solvation = -27411.345481 eV Core-core repulsion = 23758.067195 eV Total energy + Delta-G solvation = -3653.278287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62196 -40.65697 -38.16060 -37.34728 -35.34367 -34.50481 -34.03907 -32.22279 -30.97322 -29.19506 -28.34723 -27.22020 -26.06704 -24.29448 -23.43863 -22.79552 -21.78472 -20.13065 -19.67495 -18.43114 -18.17181 -17.76880 -16.98272 -16.91693 -16.73529 -16.33728 -15.99865 -15.51107 -15.11713 -14.93373 -14.82677 -14.53895 -14.49026 -14.06375 -13.80096 -13.61088 -13.44645 -13.28686 -13.11921 -12.93168 -12.82647 -12.81127 -12.69291 -12.60135 -12.44497 -12.27561 -12.13506 -12.01604 -11.90073 -11.75969 -11.61121 -11.55414 -11.14476 -10.80528 -10.59990 -10.42850 -9.66790 -9.35434 -8.09242 -6.22080 1.46474 1.51908 1.57648 1.62121 1.74038 2.02147 2.35171 2.51986 3.20249 3.50083 3.64809 3.76361 3.83246 4.00256 4.08983 4.12864 4.21644 4.32760 4.42154 4.51049 4.59798 4.65994 4.67245 4.70193 4.72270 4.76928 4.80107 4.81370 4.84323 4.91885 4.95306 4.99783 5.04279 5.08407 5.22066 5.24462 5.28455 5.29677 5.43030 5.46728 5.55758 5.61978 5.80210 5.98625 6.25566 6.41023 6.71873 6.88667 7.16386 7.33005 7.50828 8.93849 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.004390 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.678063 B = 6376.326563 C = 7907.223546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.138 4.138 4 C 0.509 3.491 5 O -0.588 6.588 6 N -0.611 5.611 7 C 0.115 3.885 8 C -0.100 4.100 9 C -0.096 4.096 10 C 0.506 3.494 11 O -0.601 6.601 12 N -0.596 5.596 13 C 0.098 3.902 14 C 0.256 3.744 15 H 0.060 0.940 16 C -0.146 4.146 17 C -0.537 4.537 18 H 0.050 0.950 19 C 0.038 3.962 20 N -0.902 5.902 21 Si 0.945 3.055 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.279 1.279 25 C -0.123 4.123 26 C 0.116 3.884 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.266 0.734 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -9.102 2.417 10.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.178 4.178 4 C 0.299 3.701 5 O -0.469 6.469 6 N -0.344 5.344 7 C -0.007 4.007 8 C -0.139 4.139 9 C -0.117 4.117 10 C 0.296 3.704 11 O -0.484 6.484 12 N -0.326 5.326 13 C -0.045 4.045 14 C 0.155 3.845 15 H 0.078 0.922 16 C -0.204 4.204 17 C -0.575 4.575 18 H 0.069 0.931 19 C -0.164 4.164 20 N -0.541 5.541 21 Si 0.772 3.228 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.204 1.204 25 C -0.162 4.162 26 C -0.006 4.006 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.280 -9.771 2.141 10.527 hybrid contribution -0.417 1.018 -0.530 1.221 sum -3.697 -8.753 1.611 9.638 Atomic orbital electron populations 1.21763 0.93688 1.02429 1.02662 1.21245 0.96693 0.94481 1.02051 1.21842 0.89254 1.00507 1.06166 1.21389 0.91784 0.82448 0.74450 1.90644 1.71580 1.32324 1.52376 1.48328 1.07035 1.06557 1.72432 1.21575 0.79771 1.00953 0.98434 1.21602 1.00595 0.93154 0.98559 1.21218 0.97534 0.95278 0.97661 1.21039 0.79009 0.82796 0.87598 1.90574 1.43284 1.74283 1.40271 1.48333 1.55764 1.07208 1.21269 1.21365 0.98886 0.95581 0.88673 1.19029 0.89269 0.92895 0.83265 0.92205 1.22038 0.97507 0.99429 1.01451 1.21421 1.09441 1.33018 0.93660 0.93136 1.25337 0.99577 0.96515 0.94927 1.69922 1.38813 1.43485 1.01854 0.85765 0.80601 0.78535 0.77943 1.19988 1.21231 1.20386 1.21914 0.92884 1.02108 0.99280 1.21853 0.97789 0.82358 0.98634 0.92078 0.91637 0.92036 0.93013 0.92498 0.86562 0.87320 0.89762 0.89710 0.90356 0.92826 0.88075 0.93883 0.90663 0.92287 0.95069 0.90378 0.95628 0.92478 0.89082 0.92307 0.89661 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.34 16 2 C -0.11 -2.02 5.22 30.59 0.16 -1.86 16 3 C -0.14 -2.57 4.05 29.85 0.12 -2.45 16 4 C 0.51 13.48 7.70 87.66 0.67 14.16 16 5 O -0.59 -19.94 15.39 -3.03 -0.05 -19.98 16 6 N -0.61 -15.43 2.98 -818.89 -2.44 -17.87 16 7 C 0.12 2.99 6.43 86.36 0.56 3.54 16 8 C -0.10 -2.96 4.69 30.67 0.14 -2.81 16 9 C -0.10 -3.06 1.62 -11.51 -0.02 -3.08 16 10 C 0.51 19.90 6.93 87.66 0.61 20.51 16 11 O -0.60 -26.61 15.64 -3.04 -0.05 -26.65 16 12 N -0.60 -23.90 2.75 -826.80 -2.28 -26.17 16 13 C 0.10 3.66 9.36 127.77 1.20 4.86 16 14 C 0.26 10.78 1.71 44.25 0.08 10.85 16 15 H 0.06 2.52 4.47 -2.39 -0.01 2.51 16 16 C -0.15 -6.07 9.04 71.98 0.65 -5.42 16 17 C -0.54 -24.87 7.97 25.60 0.20 -24.67 16 18 H 0.05 2.43 7.44 -2.91 -0.02 2.40 16 19 C 0.04 1.76 5.30 84.65 0.45 2.21 16 20 N -0.90 -43.16 11.32 21.45 0.24 -42.92 16 21 Si 0.94 38.14 29.54 68.60 2.03 40.17 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.29 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 25 C -0.12 -3.65 4.97 30.66 0.15 -3.50 16 26 C 0.12 2.66 6.33 86.34 0.55 3.21 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 32 H 0.12 1.66 7.95 -2.39 -0.02 1.64 16 33 H 0.11 1.74 7.69 -2.38 -0.02 1.72 16 34 H 0.08 2.35 7.01 -2.39 -0.02 2.33 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 38 H 0.10 3.14 7.14 -2.39 -0.02 3.12 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 2.70 6.76 -2.39 -0.02 2.69 16 41 H 0.06 2.13 7.53 -2.39 -0.02 2.11 16 42 H 0.03 1.27 6.93 -2.39 -0.02 1.25 16 43 H 0.08 3.56 6.07 -2.39 -0.01 3.55 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.27 12.26 8.31 -92.70 -0.77 11.49 16 46 H 0.09 3.14 5.84 -2.39 -0.01 3.12 16 47 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 49 H 0.11 2.04 5.95 -2.39 -0.01 2.03 16 Total: -1.00 -58.84 376.78 4.61 -54.23 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.92 Total: 25.00 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 6.23 Total: 14.21 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -4.48 Total: -86.96 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.09 Total: -46.64 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -58.84 4.61 -54.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.373 kcal (2) G-P(sol) polarization free energy of solvation -58.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds