Wall clock time and date at job start Tue Mar 31 2020 10:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.50703 * 109.47216 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99978 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00020 * 180.27333 * 4 3 2 7 7 C 1.46930 * 120.62857 * 355.93635 * 6 4 3 8 8 C 1.53189 * 108.77323 * 233.58709 * 7 6 4 9 9 C 1.53040 * 109.31197 * 305.36315 * 8 7 6 10 10 C 1.53040 * 109.53583 * 61.37201 * 9 8 7 11 11 C 1.46917 * 120.62986 * 175.65878 * 6 4 3 12 12 H 1.09005 * 109.58811 * 246.19998 * 11 6 4 13 13 C 1.50702 * 109.58880 * 6.62340 * 11 6 4 14 14 O 1.21279 * 119.99672 * 65.66479 * 13 11 6 15 15 N 1.34776 * 119.99940 * 245.66605 * 13 11 6 16 16 C 1.46499 * 120.00257 * 4.71670 * 15 13 11 17 17 C 1.52994 * 109.47144 * 84.50811 * 16 15 13 18 18 C 1.46500 * 119.99553 * 184.71542 * 15 13 11 19 19 C 1.50701 * 109.47282 * 89.99968 * 18 15 13 20 20 H 1.07999 * 119.99657 * 0.02562 * 19 18 15 21 21 C 1.37873 * 120.00127 * 179.97438 * 19 18 15 22 22 N 1.31519 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46972 * 90.00319 * 23 21 19 25 25 H 1.48496 * 109.47263 * 210.00198 * 23 21 19 26 26 H 1.48498 * 109.46905 * 329.99983 * 23 21 19 27 27 H 1.08997 * 109.46712 * 60.00689 * 1 2 3 28 28 H 1.09003 * 109.46757 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46938 * 300.00214 * 1 2 3 30 30 H 1.09000 * 109.47412 * 240.00025 * 2 1 3 31 31 H 1.09004 * 109.47359 * 119.99488 * 2 1 3 32 32 H 1.08998 * 109.47427 * 59.99137 * 3 2 1 33 33 H 1.09004 * 109.46644 * 299.99926 * 3 2 1 34 34 H 1.08998 * 109.58947 * 353.37194 * 7 6 4 35 35 H 1.08995 * 109.58484 * 113.65708 * 7 6 4 36 36 H 1.08994 * 109.50204 * 65.31968 * 8 7 6 37 37 H 1.09005 * 109.49858 * 185.41528 * 8 7 6 38 38 H 1.09009 * 109.46097 * 181.38433 * 9 8 7 39 39 H 1.08999 * 109.46617 * 301.35790 * 9 8 7 40 40 H 1.08989 * 109.50060 * 58.58458 * 10 9 8 41 41 H 1.09000 * 109.49710 * 178.64971 * 10 9 8 42 42 H 1.09002 * 109.47149 * 204.51067 * 16 15 13 43 43 H 1.08996 * 109.47012 * 324.50831 * 16 15 13 44 44 H 1.09002 * 109.47488 * 59.99823 * 17 16 15 45 45 H 1.08998 * 109.47325 * 180.02562 * 17 16 15 46 46 H 1.09002 * 109.47306 * 300.00160 * 17 16 15 47 47 H 1.09003 * 109.46985 * 210.00342 * 18 15 13 48 48 H 1.09003 * 109.47137 * 330.00055 * 18 15 13 49 49 H 0.97002 * 119.99591 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 8 4.1535 0.3923 -0.0006 6 7 4.2209 2.6098 0.0048 7 6 3.5029 3.8890 -0.0782 8 6 4.0825 4.7053 -1.2377 9 6 5.5952 4.8444 -1.0523 10 6 6.2423 3.4577 -1.0671 11 6 5.6869 2.6273 0.1000 12 1 5.9863 3.0768 1.0468 13 6 6.2155 1.2185 0.0168 14 8 6.0846 0.5812 -1.0067 15 7 6.8336 0.6668 1.0799 16 6 6.9007 1.3967 2.3484 17 6 5.6155 1.1572 3.1431 18 6 7.4384 -0.6627 0.9669 19 6 8.8719 -0.5264 0.5225 20 1 9.2907 0.4527 0.3427 21 6 9.6490 -1.6516 0.3464 22 7 9.1391 -2.8439 0.5659 23 14 11.4262 -1.4826 -0.2037 24 1 12.3043 -1.3659 0.9881 25 1 11.8166 -2.6797 -0.9909 26 1 11.5703 -0.2680 -1.0457 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 2.4438 3.7028 -0.2560 35 1 3.6257 4.4381 0.8553 36 1 3.8766 4.1966 -2.1794 37 1 3.6251 5.6947 -1.2505 38 1 6.0067 5.4458 -1.8630 39 1 5.8011 5.3309 -0.0988 40 1 6.0162 2.9607 -2.0104 41 1 7.3222 3.5589 -0.9591 42 1 7.7558 1.0445 2.9254 43 1 7.0113 2.4625 2.1489 44 1 5.5049 0.0913 3.3426 45 1 5.6652 1.7006 4.0867 46 1 4.7605 1.5094 2.5661 47 1 7.4041 -1.1610 1.9357 48 1 6.8857 -1.2523 0.2353 49 1 9.6860 -3.6354 0.4424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133355849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:53 Heat of formation + Delta-G solvation = -72.716520 kcal Electronic energy + Delta-G solvation = -28277.443170 eV Core-core repulsion = 24625.547498 eV Total energy + Delta-G solvation = -3651.895673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65595 -38.12590 -37.22057 -35.01587 -34.28894 -32.84140 -32.70743 -31.27507 -29.90113 -28.10575 -27.08707 -25.29457 -23.88896 -22.84330 -22.50119 -21.77786 -20.59105 -19.19522 -18.04785 -16.98268 -16.29794 -16.16156 -15.82346 -15.63458 -15.11512 -14.60972 -14.42960 -14.11265 -14.01876 -13.74238 -13.69561 -13.20344 -13.12570 -12.91196 -12.70811 -12.56978 -12.09991 -11.90222 -11.85002 -11.72031 -11.60060 -11.30274 -11.21229 -11.09642 -11.03816 -10.89235 -10.78867 -10.73876 -10.70025 -10.58313 -10.32111 -9.99615 -9.51125 -9.03892 -8.59401 -8.37627 -8.30522 -7.33282 -5.90964 -3.95640 2.88499 2.92453 3.36236 3.42603 3.46855 4.00520 4.08014 4.52677 4.60229 4.63689 4.77754 4.87623 4.89171 4.99065 5.10332 5.17291 5.19100 5.32110 5.38394 5.40625 5.43030 5.44111 5.53874 5.56330 5.65313 5.68599 5.77084 5.81575 5.83712 5.89009 5.97699 6.00385 6.04955 6.14126 6.16141 6.35393 6.36391 6.39665 6.61244 6.62953 7.30024 7.54268 7.71153 7.83973 8.08569 8.40401 8.49666 8.72815 9.06993 9.48084 9.70127 11.16611 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.004729 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.359927 B = 5919.079990 C = 6883.801345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.494 3.506 5 O -0.478 6.478 6 N -0.608 5.608 7 C 0.111 3.889 8 C -0.136 4.136 9 C -0.116 4.116 10 C -0.122 4.122 11 C 0.119 3.881 12 H 0.086 0.914 13 C 0.534 3.466 14 O -0.524 6.524 15 N -0.597 5.597 16 C 0.108 3.892 17 C -0.164 4.164 18 C 0.254 3.746 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.025 0.975 48 H 0.045 0.955 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 17.376 2.201 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.173 4.173 4 C 0.282 3.718 5 O -0.350 6.350 6 N -0.345 5.345 7 C -0.012 4.012 8 C -0.174 4.174 9 C -0.154 4.154 10 C -0.161 4.161 11 C 0.013 3.987 12 H 0.103 0.897 13 C 0.320 3.680 14 O -0.400 6.400 15 N -0.330 5.330 16 C -0.017 4.017 17 C -0.223 4.223 18 C 0.135 3.865 19 C -0.562 4.562 20 H 0.073 0.927 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.306 16.188 1.643 22.339 hybrid contribution 1.026 0.255 -0.176 1.072 sum -14.280 16.444 1.467 21.828 Atomic orbital electron populations 1.21779 0.95735 1.01846 1.01367 1.21299 0.94869 0.94792 1.04004 1.21698 0.92122 1.00001 1.03467 1.20871 0.90269 0.83671 0.77032 1.90954 1.67949 1.30300 1.45798 1.48015 1.05332 1.06066 1.75132 1.21696 0.96397 0.84396 0.98685 1.21930 0.96469 0.99992 0.99038 1.21506 0.94971 0.96824 1.02096 1.21872 1.00367 0.94839 0.99014 1.21553 0.80506 0.97089 0.99595 0.89650 1.19326 0.77926 0.86247 0.84486 1.90630 1.56597 1.61850 1.30884 1.48001 1.55701 1.20302 1.08960 1.21374 0.97978 0.95699 0.86614 1.22199 0.98394 1.02451 0.99239 1.19137 0.92228 0.77594 0.97543 1.21508 0.96341 0.92777 1.45610 0.92687 1.24934 0.98539 0.95144 0.95550 1.69957 1.36413 0.97533 1.49488 0.86544 0.84901 0.77622 0.78602 1.20745 1.21179 1.19980 0.92902 0.92465 0.92920 0.91012 0.91142 0.89432 0.89484 0.89730 0.91463 0.91301 0.90825 0.91443 0.91790 0.90288 0.90566 0.90071 0.92338 0.92195 0.92687 0.93438 0.95657 0.93689 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.11 -1.38 5.22 -26.73 -0.14 -1.52 16 3 C -0.13 -1.49 4.08 -27.88 -0.11 -1.61 16 4 C 0.49 8.02 7.30 -10.98 -0.08 7.94 16 5 O -0.48 -10.56 11.51 -19.28 -0.22 -10.78 16 6 N -0.61 -8.51 2.97 -166.28 -0.49 -9.00 16 7 C 0.11 0.99 6.33 -3.71 -0.02 0.97 16 8 C -0.14 -1.15 6.08 -26.61 -0.16 -1.32 16 9 C -0.12 -1.15 5.88 -26.69 -0.16 -1.30 16 10 C -0.12 -1.77 5.31 -26.38 -0.14 -1.91 16 11 C 0.12 1.94 2.82 -68.53 -0.19 1.75 16 12 H 0.09 1.24 5.41 -51.93 -0.28 0.96 16 13 C 0.53 12.13 4.20 -10.98 -0.05 12.08 16 14 O -0.52 -14.49 14.07 -19.28 -0.27 -14.76 16 15 N -0.60 -13.83 2.47 -175.06 -0.43 -14.27 16 16 C 0.11 1.92 5.80 -4.05 -0.02 1.90 16 17 C -0.16 -2.55 10.20 37.15 0.38 -2.18 16 18 C 0.25 7.22 5.17 -5.19 -0.03 7.19 16 19 C -0.52 -15.59 9.39 -34.44 -0.32 -15.91 16 20 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -27.91 13.29 55.43 0.74 -27.18 16 23 Si 0.90 22.63 29.54 -169.99 -5.02 17.61 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.09 0.81 7.53 -51.93 -0.39 0.42 16 34 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.34 7.88 -51.94 -0.41 0.93 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 43 H 0.06 0.88 5.95 -51.93 -0.31 0.57 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.74 7.71 -51.93 -0.40 0.34 16 47 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 48 H 0.05 1.48 7.36 -51.93 -0.38 1.10 16 49 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -37.72 382.17 -9.50 -47.21 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.77 Total: -1.39 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.78 Total: 6.80 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.19 Total: -50.45 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.49 Total: -25.54 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.72 -9.50 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133355849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.504 kcal (2) G-P(sol) polarization free energy of solvation -37.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds