Wall clock time and date at job start Tue Mar 31 2020 10:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.50703 * 109.47216 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99978 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00020 * 180.27333 * 4 3 2 7 7 C 1.46930 * 120.62857 * 355.93635 * 6 4 3 8 8 C 1.53189 * 108.77323 * 233.58709 * 7 6 4 9 9 C 1.53040 * 109.31197 * 305.36315 * 8 7 6 10 10 C 1.53040 * 109.53583 * 61.37201 * 9 8 7 11 11 C 1.46917 * 120.62986 * 175.65878 * 6 4 3 12 12 H 1.09005 * 109.58811 * 246.19998 * 11 6 4 13 13 C 1.50702 * 109.58880 * 6.62340 * 11 6 4 14 14 O 1.21279 * 119.99672 * 65.66479 * 13 11 6 15 15 N 1.34776 * 119.99940 * 245.66605 * 13 11 6 16 16 C 1.46499 * 120.00257 * 4.71670 * 15 13 11 17 17 C 1.52994 * 109.47144 * 84.50811 * 16 15 13 18 18 C 1.46500 * 119.99553 * 184.71542 * 15 13 11 19 19 C 1.50701 * 109.47282 * 89.99968 * 18 15 13 20 20 H 1.07999 * 119.99657 * 0.02562 * 19 18 15 21 21 C 1.37873 * 120.00127 * 179.97438 * 19 18 15 22 22 N 1.31519 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46972 * 90.00319 * 23 21 19 25 25 H 1.48496 * 109.47263 * 210.00198 * 23 21 19 26 26 H 1.48498 * 109.46905 * 329.99983 * 23 21 19 27 27 H 1.08997 * 109.46712 * 60.00689 * 1 2 3 28 28 H 1.09003 * 109.46757 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46938 * 300.00214 * 1 2 3 30 30 H 1.09000 * 109.47412 * 240.00025 * 2 1 3 31 31 H 1.09004 * 109.47359 * 119.99488 * 2 1 3 32 32 H 1.08998 * 109.47427 * 59.99137 * 3 2 1 33 33 H 1.09004 * 109.46644 * 299.99926 * 3 2 1 34 34 H 1.08998 * 109.58947 * 353.37194 * 7 6 4 35 35 H 1.08995 * 109.58484 * 113.65708 * 7 6 4 36 36 H 1.08994 * 109.50204 * 65.31968 * 8 7 6 37 37 H 1.09005 * 109.49858 * 185.41528 * 8 7 6 38 38 H 1.09009 * 109.46097 * 181.38433 * 9 8 7 39 39 H 1.08999 * 109.46617 * 301.35790 * 9 8 7 40 40 H 1.08989 * 109.50060 * 58.58458 * 10 9 8 41 41 H 1.09000 * 109.49710 * 178.64971 * 10 9 8 42 42 H 1.09002 * 109.47149 * 204.51067 * 16 15 13 43 43 H 1.08996 * 109.47012 * 324.50831 * 16 15 13 44 44 H 1.09002 * 109.47488 * 59.99823 * 17 16 15 45 45 H 1.08998 * 109.47325 * 180.02562 * 17 16 15 46 46 H 1.09002 * 109.47306 * 300.00160 * 17 16 15 47 47 H 1.09003 * 109.46985 * 210.00342 * 18 15 13 48 48 H 1.09003 * 109.47137 * 330.00055 * 18 15 13 49 49 H 0.97002 * 119.99591 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 8 4.1535 0.3923 -0.0006 6 7 4.2209 2.6098 0.0048 7 6 3.5029 3.8890 -0.0782 8 6 4.0825 4.7053 -1.2377 9 6 5.5952 4.8444 -1.0523 10 6 6.2423 3.4577 -1.0671 11 6 5.6869 2.6273 0.1000 12 1 5.9863 3.0768 1.0468 13 6 6.2155 1.2185 0.0168 14 8 6.0846 0.5812 -1.0067 15 7 6.8336 0.6668 1.0799 16 6 6.9007 1.3967 2.3484 17 6 5.6155 1.1572 3.1431 18 6 7.4384 -0.6627 0.9669 19 6 8.8719 -0.5264 0.5225 20 1 9.2907 0.4527 0.3427 21 6 9.6490 -1.6516 0.3464 22 7 9.1391 -2.8439 0.5659 23 14 11.4262 -1.4826 -0.2037 24 1 12.3043 -1.3659 0.9881 25 1 11.8166 -2.6797 -0.9909 26 1 11.5703 -0.2680 -1.0457 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 2.4438 3.7028 -0.2560 35 1 3.6257 4.4381 0.8553 36 1 3.8766 4.1966 -2.1794 37 1 3.6251 5.6947 -1.2505 38 1 6.0067 5.4458 -1.8630 39 1 5.8011 5.3309 -0.0988 40 1 6.0162 2.9607 -2.0104 41 1 7.3222 3.5589 -0.9591 42 1 7.7558 1.0445 2.9254 43 1 7.0113 2.4625 2.1489 44 1 5.5049 0.0913 3.3426 45 1 5.6652 1.7006 4.0867 46 1 4.7605 1.5094 2.5661 47 1 7.4041 -1.1610 1.9357 48 1 6.8857 -1.2523 0.2353 49 1 9.6860 -3.6354 0.4424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133355849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:52 Heat of formation + Delta-G solvation = -97.735587 kcal Electronic energy + Delta-G solvation = -28278.528079 eV Core-core repulsion = 24625.547498 eV Total energy + Delta-G solvation = -3652.980581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97261 -39.71939 -38.35031 -36.82263 -35.34099 -34.92912 -33.86042 -32.46634 -31.56649 -29.18239 -28.91427 -26.52821 -25.24736 -24.50681 -23.85551 -22.92556 -21.57273 -20.48463 -19.43678 -18.70897 -18.22040 -17.64120 -17.12149 -16.83073 -16.75762 -16.13363 -15.62924 -15.47164 -15.15022 -14.96561 -14.79587 -14.63691 -14.48696 -14.12611 -13.96191 -13.83630 -13.75881 -13.37619 -13.23249 -13.02011 -12.83198 -12.76108 -12.63926 -12.56252 -12.36646 -12.22118 -12.11628 -12.01686 -11.82895 -11.73033 -11.69291 -11.67283 -11.53944 -10.66110 -10.45709 -10.27284 -9.62146 -9.25391 -8.21945 -6.39520 1.32551 1.37389 1.47774 1.67268 1.73675 2.28931 2.47913 2.49422 3.05244 3.48749 3.77875 3.80521 3.90203 3.94034 3.98847 4.07279 4.13549 4.19652 4.21104 4.36990 4.47592 4.55106 4.60200 4.64890 4.68998 4.74182 4.85030 4.86267 4.87107 4.90542 4.92056 5.01306 5.09754 5.14651 5.19704 5.22723 5.23970 5.25789 5.32176 5.42885 5.46928 5.56141 5.60154 5.94332 6.08211 6.45599 6.70357 6.94550 7.27302 7.32070 7.77993 8.84973 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.004729 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.359927 B = 5919.079990 C = 6883.801345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.119 4.119 4 C 0.479 3.521 5 O -0.551 6.551 6 N -0.604 5.604 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.108 4.108 10 C -0.122 4.122 11 C 0.130 3.870 12 H 0.114 0.886 13 C 0.525 3.475 14 O -0.590 6.590 15 N -0.608 5.608 16 C 0.100 3.900 17 C -0.152 4.152 18 C 0.276 3.724 19 C -0.542 4.542 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.933 5.933 23 Si 0.975 3.025 24 H -0.259 1.259 25 H -0.281 1.281 26 H -0.270 1.270 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.027 0.973 45 H 0.100 0.900 46 H 0.047 0.953 47 H 0.006 0.994 48 H -0.019 1.019 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 22.201 3.388 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.159 4.159 4 C 0.269 3.731 5 O -0.428 6.428 6 N -0.340 5.340 7 C -0.018 4.018 8 C -0.171 4.171 9 C -0.146 4.146 10 C -0.161 4.161 11 C 0.023 3.977 12 H 0.131 0.869 13 C 0.315 3.685 14 O -0.470 6.470 15 N -0.340 5.340 16 C -0.023 4.023 17 C -0.210 4.210 18 C 0.155 3.845 19 C -0.580 4.580 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.573 5.573 23 Si 0.798 3.202 24 H -0.183 1.183 25 H -0.207 1.207 26 H -0.195 1.195 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.047 0.953 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.024 0.976 48 H -0.001 1.001 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.386 21.114 2.873 26.880 hybrid contribution 1.306 -1.278 -0.557 1.910 sum -15.080 19.836 2.316 25.024 Atomic orbital electron populations 1.21712 0.92521 1.02287 1.03204 1.21261 0.97502 0.95431 1.00884 1.21733 0.88073 0.99513 1.06555 1.21893 0.92408 0.83201 0.75645 1.90945 1.69540 1.33049 1.49293 1.48237 1.04222 1.07708 1.73838 1.22204 0.97289 0.81878 1.00476 1.21960 0.95459 1.01784 0.97923 1.21516 0.95702 0.93280 1.04056 1.21899 1.00458 0.97399 0.96298 1.21397 0.82432 0.92247 1.01630 0.86858 1.20448 0.76505 0.88510 0.83027 1.90578 1.58774 1.64234 1.33383 1.48037 1.55573 1.18805 1.11571 1.21720 0.99057 0.97093 0.84385 1.22087 0.96947 1.01073 1.00873 1.18446 0.91592 0.80146 0.94361 1.21748 0.96911 0.93095 1.46278 0.92598 1.26002 1.04005 0.94499 0.95109 1.70114 1.38578 0.98534 1.50065 0.85314 0.78368 0.77694 0.78792 1.18348 1.20652 1.19453 0.91220 0.92898 0.90730 0.94771 0.93957 0.85487 0.86563 0.86941 0.88247 0.93179 0.86777 0.90211 0.89207 0.94055 0.91388 0.90810 0.88373 0.95346 0.88167 0.93386 0.97559 1.00060 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 71.98 0.71 -1.59 16 2 C -0.11 -2.87 5.22 30.60 0.16 -2.71 16 3 C -0.12 -2.46 4.08 29.85 0.12 -2.34 16 4 C 0.48 15.70 7.30 87.66 0.64 16.34 16 5 O -0.55 -26.42 11.51 20.71 0.24 -26.18 16 6 N -0.60 -15.88 2.97 -798.38 -2.37 -18.24 16 7 C 0.10 1.31 6.33 86.36 0.55 1.85 16 8 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 9 C -0.11 -1.72 5.88 30.62 0.18 -1.54 16 10 C -0.12 -3.47 5.31 30.82 0.16 -3.31 16 11 C 0.13 4.16 2.82 44.38 0.13 4.28 16 12 H 0.11 2.95 5.41 -2.38 -0.01 2.93 16 13 C 0.53 25.33 4.20 87.66 0.37 25.69 16 14 O -0.59 -35.74 14.07 20.72 0.29 -35.45 16 15 N -0.61 -29.92 2.47 -826.16 -2.04 -31.96 16 16 C 0.10 3.55 5.80 86.38 0.50 4.05 16 17 C -0.15 -4.60 10.20 71.98 0.73 -3.87 16 18 C 0.28 17.12 5.17 85.63 0.44 17.56 16 19 C -0.54 -34.05 9.39 25.60 0.24 -33.81 16 20 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 21 C 0.00 0.13 5.46 84.65 0.46 0.59 16 22 N -0.93 -61.18 13.29 21.45 0.28 -60.90 16 23 Si 0.98 47.56 29.54 68.60 2.03 49.59 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.04 1.28 8.10 -2.39 -0.02 1.26 16 32 H 0.13 1.65 8.08 -2.39 -0.02 1.63 16 33 H 0.12 1.75 7.53 -2.39 -0.02 1.73 16 34 H 0.11 0.87 5.96 -2.39 -0.01 0.86 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.04 1.47 7.88 -2.39 -0.02 1.45 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 43 H 0.10 2.69 5.95 -2.39 -0.01 2.68 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.05 1.45 7.71 -2.39 -0.02 1.43 16 47 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 48 H -0.02 -1.38 7.36 -2.39 -0.02 -1.40 16 49 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -96.46 382.17 4.92 -91.54 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.90 Total: 11.85 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 5.59 Total: 19.75 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.12 Total: -111.10 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: 0.53 Total: -61.63 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -96.46 4.92 -91.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133355849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.198 kcal (2) G-P(sol) polarization free energy of solvation -96.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds