Wall clock time and date at job start Tue Mar 31 2020 10:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47298 * 2 1 4 4 C 1.50704 * 109.47301 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00050 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00199 * 179.97438 * 4 3 2 7 7 C 1.46926 * 120.62797 * 6.09154 * 6 4 3 8 8 C 1.53194 * 108.77568 * 233.60569 * 7 6 4 9 9 C 1.53038 * 109.31255 * 305.36760 * 8 7 6 10 10 C 1.53043 * 109.54028 * 61.36081 * 9 8 7 11 11 C 1.46922 * 120.63617 * 186.08643 * 6 4 3 12 12 H 1.08999 * 109.58976 * 246.18533 * 11 6 4 13 13 C 1.50713 * 109.69801 * 6.53746 * 11 6 4 14 14 O 1.21281 * 120.00025 * 61.30476 * 13 11 6 15 15 N 1.34776 * 119.99604 * 241.30179 * 13 11 6 16 16 C 1.46494 * 119.99674 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47282 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47510 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47252 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00106 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00347 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47094 * 90.00164 * 23 21 19 25 25 H 1.48498 * 109.46988 * 210.00221 * 23 21 19 26 26 H 1.48501 * 109.46914 * 330.00268 * 23 21 19 27 27 H 1.09010 * 109.47043 * 60.00071 * 1 2 3 28 28 H 1.08994 * 109.47623 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47508 * 300.00319 * 1 2 3 30 30 H 1.09004 * 109.47217 * 239.99777 * 2 1 3 31 31 H 1.09004 * 109.47382 * 119.99650 * 2 1 3 32 32 H 1.08996 * 109.47101 * 59.99432 * 3 2 1 33 33 H 1.09005 * 109.47012 * 299.99452 * 3 2 1 34 34 H 1.08999 * 109.58686 * 113.81951 * 7 6 4 35 35 H 1.09003 * 109.70785 * 353.46171 * 7 6 4 36 36 H 1.08998 * 109.49995 * 185.41061 * 8 7 6 37 37 H 1.08999 * 109.52072 * 65.33101 * 8 7 6 38 38 H 1.09003 * 109.45850 * 301.34045 * 9 8 7 39 39 H 1.08999 * 109.46335 * 181.38456 * 9 8 7 40 40 H 1.08998 * 109.49868 * 178.68295 * 10 9 8 41 41 H 1.09005 * 109.52197 * 58.60273 * 10 9 8 42 42 H 0.97000 * 120.00130 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.47181 * 299.99667 * 16 15 13 44 44 H 1.08996 * 109.47630 * 59.99446 * 16 15 13 45 45 H 1.09005 * 109.47173 * 299.99606 * 17 16 15 46 46 H 1.09002 * 109.47141 * 59.99761 * 17 16 15 47 47 H 1.09005 * 109.46839 * 300.00126 * 18 17 16 48 48 H 1.09002 * 109.46856 * 59.99903 * 18 17 16 49 49 H 0.96999 * 119.99862 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.5064 3.8866 0.1333 8 6 3.9077 4.7996 -1.0295 9 6 5.4318 4.9329 -1.0656 10 6 6.0608 3.5564 -1.2930 11 6 5.6839 2.6294 -0.1332 12 1 6.1301 2.9991 0.7900 13 6 6.1871 1.2370 -0.4153 14 8 5.8319 0.6555 -1.4186 15 7 7.0319 0.6382 0.4474 16 6 7.5215 -0.7149 0.1729 17 6 8.4581 -1.1567 1.2991 18 6 8.9690 -2.5702 1.0128 19 6 9.8921 -3.0050 2.1218 20 1 10.0938 -2.3399 2.9484 21 6 10.4782 -4.2523 2.0818 22 7 10.2321 -5.0625 1.0754 23 14 11.6218 -4.7916 3.4568 24 1 10.8347 -5.4692 4.5182 25 1 12.6365 -5.7316 2.9166 26 1 12.3033 -3.6026 4.0287 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.7751 4.3588 1.0782 35 1 2.4310 3.7107 0.1055 36 1 3.4596 5.7835 -0.8909 37 1 3.5578 4.3694 -1.9679 38 1 5.7833 5.3406 -0.1178 39 1 5.7188 5.6018 -1.8770 40 1 7.1452 3.6555 -1.3420 41 1 5.6912 3.1371 -2.2289 42 1 7.3163 1.1035 1.2496 43 1 6.6770 -1.4015 0.1119 44 1 8.0632 -0.7205 -0.7729 45 1 9.3026 -0.4701 1.3597 46 1 7.9167 -1.1511 2.2452 47 1 8.1243 -3.2565 0.9525 48 1 9.5103 -2.5762 0.0667 49 1 10.6447 -5.9399 1.0471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171499710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:00 Heat of formation + Delta-G solvation = -97.335000 kcal Electronic energy + Delta-G solvation = -26543.210493 eV Core-core repulsion = 22890.247283 eV Total energy + Delta-G solvation = -3652.963210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99695 -38.51778 -37.59960 -35.18111 -34.50993 -33.18414 -33.14480 -31.89337 -30.84103 -28.32798 -26.90042 -25.53394 -24.14484 -22.88931 -22.22192 -20.86395 -20.56621 -20.11390 -18.93422 -17.48866 -16.53961 -16.45571 -16.15755 -15.86529 -15.18183 -14.93705 -14.75269 -14.53710 -14.37917 -14.21917 -14.06275 -13.76789 -13.47363 -13.17756 -12.99515 -12.73432 -12.20134 -12.15664 -11.94068 -11.79708 -11.71655 -11.54989 -11.43871 -11.31031 -11.19804 -11.01548 -10.89578 -10.84208 -10.60932 -10.52960 -9.76566 -9.64003 -9.52587 -9.18684 -9.01368 -8.85952 -8.44580 -8.31000 -5.95600 -3.98443 2.45951 2.61112 3.34579 3.36876 3.40368 3.43256 3.51846 4.30586 4.36978 4.49152 4.50279 4.59111 4.68423 4.70826 4.81637 4.87087 4.97513 5.06859 5.16095 5.21704 5.27010 5.36739 5.37910 5.39824 5.47675 5.49531 5.57192 5.66942 5.71820 5.86748 5.91267 5.96889 5.99482 6.00931 6.17166 6.26043 6.34218 6.72386 6.78693 7.01317 7.15725 7.18422 7.71759 7.86176 7.96385 8.04313 8.11994 8.45432 8.75798 9.08443 9.65178 11.15790 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.002841 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.756691 B = 9853.398601 C =11090.963789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.132 4.132 4 C 0.502 3.498 5 O -0.491 6.491 6 N -0.610 5.610 7 C 0.110 3.890 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.123 4.123 11 C 0.128 3.872 12 H 0.083 0.917 13 C 0.530 3.470 14 O -0.530 6.530 15 N -0.724 5.724 16 C 0.125 3.875 17 C -0.119 4.119 18 C 0.024 3.976 19 C -0.520 4.520 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.392 0.608 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 24.351 -2.258 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.172 4.172 4 C 0.290 3.710 5 O -0.363 6.363 6 N -0.347 5.347 7 C -0.012 4.012 8 C -0.176 4.176 9 C -0.155 4.155 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.101 0.899 13 C 0.315 3.685 14 O -0.406 6.406 15 N -0.375 5.375 16 C 0.003 3.997 17 C -0.157 4.157 18 C -0.013 4.013 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.211 23.118 -3.067 29.589 hybrid contribution 0.798 0.007 1.172 1.418 sum -17.413 23.126 -1.894 29.010 Atomic orbital electron populations 1.21778 0.95536 1.02037 1.01466 1.21308 0.95118 0.94582 1.04006 1.21693 0.91492 1.00290 1.03741 1.20898 0.90551 0.83243 0.76260 1.90843 1.68340 1.30545 1.46596 1.48015 1.05403 1.06539 1.74778 1.21750 0.97130 0.83652 0.98699 1.21951 0.96726 0.99748 0.99179 1.21507 0.95009 0.96557 1.02431 1.21827 1.01402 0.94563 0.98342 1.21160 0.81594 0.95389 0.99719 0.89904 1.19664 0.78423 0.86367 0.84043 1.90670 1.56659 1.64770 1.28514 1.45991 1.48414 1.18132 1.24953 1.21509 0.97693 0.81254 0.99291 1.21870 0.96932 1.00790 0.96140 1.19023 0.96081 0.89083 0.97163 1.21220 1.27296 1.00273 1.07095 0.92700 1.25035 0.96838 0.96749 0.95904 1.69978 1.44159 1.08644 1.30549 0.86587 0.80645 0.78488 0.82219 1.20687 1.21227 1.19919 0.92829 0.92322 0.92834 0.90971 0.91114 0.89245 0.89147 0.91139 0.89368 0.90520 0.91197 0.91532 0.91143 0.90315 0.90212 0.77547 0.91757 0.92331 0.92978 0.92946 0.96292 0.96343 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.15 0.37 -0.78 16 2 C -0.11 -1.17 5.22 -26.74 -0.14 -1.31 16 3 C -0.13 -1.19 4.06 -27.88 -0.11 -1.31 16 4 C 0.50 6.66 7.39 -10.98 -0.08 6.58 16 5 O -0.49 -9.05 11.75 -19.11 -0.22 -9.28 16 6 N -0.61 -6.48 2.97 -166.53 -0.49 -6.98 16 7 C 0.11 0.68 6.34 -3.71 -0.02 0.65 16 8 C -0.14 -0.75 6.08 -26.61 -0.16 -0.92 16 9 C -0.12 -0.74 5.88 -26.69 -0.16 -0.90 16 10 C -0.12 -1.18 5.31 -26.61 -0.14 -1.33 16 11 C 0.13 1.49 3.31 -68.75 -0.23 1.27 16 12 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 13 C 0.53 8.88 4.39 -10.98 -0.05 8.83 16 14 O -0.53 -11.19 14.61 -19.11 -0.28 -11.47 16 15 N -0.72 -12.04 5.56 -60.30 -0.33 -12.37 16 16 C 0.13 2.52 5.67 -4.05 -0.02 2.50 16 17 C -0.12 -2.55 5.27 -26.73 -0.14 -2.69 16 18 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 19 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 20 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 23 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.09 0.58 7.69 -51.93 -0.40 0.18 16 33 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.39 5.94 -51.93 -0.31 0.08 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 42 H 0.39 5.34 8.32 -40.82 -0.34 5.00 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -37.00 387.55 -10.22 -47.23 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -9.01 Total: -0.30 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.44 Total: -2.77 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.09 Total: -46.29 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.50 Total: -20.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.00 -10.22 -47.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.108 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds