Wall clock time and date at job start Tue Mar 31 2020 10:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47298 * 2 1 4 4 C 1.50704 * 109.47301 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00050 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00199 * 179.97438 * 4 3 2 7 7 C 1.46926 * 120.62797 * 6.09154 * 6 4 3 8 8 C 1.53194 * 108.77568 * 233.60569 * 7 6 4 9 9 C 1.53038 * 109.31255 * 305.36760 * 8 7 6 10 10 C 1.53043 * 109.54028 * 61.36081 * 9 8 7 11 11 C 1.46922 * 120.63617 * 186.08643 * 6 4 3 12 12 H 1.08999 * 109.58976 * 246.18533 * 11 6 4 13 13 C 1.50713 * 109.69801 * 6.53746 * 11 6 4 14 14 O 1.21281 * 120.00025 * 61.30476 * 13 11 6 15 15 N 1.34776 * 119.99604 * 241.30179 * 13 11 6 16 16 C 1.46494 * 119.99674 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47282 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47510 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47252 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00106 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00347 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47094 * 90.00164 * 23 21 19 25 25 H 1.48498 * 109.46988 * 210.00221 * 23 21 19 26 26 H 1.48501 * 109.46914 * 330.00268 * 23 21 19 27 27 H 1.09010 * 109.47043 * 60.00071 * 1 2 3 28 28 H 1.08994 * 109.47623 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47508 * 300.00319 * 1 2 3 30 30 H 1.09004 * 109.47217 * 239.99777 * 2 1 3 31 31 H 1.09004 * 109.47382 * 119.99650 * 2 1 3 32 32 H 1.08996 * 109.47101 * 59.99432 * 3 2 1 33 33 H 1.09005 * 109.47012 * 299.99452 * 3 2 1 34 34 H 1.08999 * 109.58686 * 113.81951 * 7 6 4 35 35 H 1.09003 * 109.70785 * 353.46171 * 7 6 4 36 36 H 1.08998 * 109.49995 * 185.41061 * 8 7 6 37 37 H 1.08999 * 109.52072 * 65.33101 * 8 7 6 38 38 H 1.09003 * 109.45850 * 301.34045 * 9 8 7 39 39 H 1.08999 * 109.46335 * 181.38456 * 9 8 7 40 40 H 1.08998 * 109.49868 * 178.68295 * 10 9 8 41 41 H 1.09005 * 109.52197 * 58.60273 * 10 9 8 42 42 H 0.97000 * 120.00130 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.47181 * 299.99667 * 16 15 13 44 44 H 1.08996 * 109.47630 * 59.99446 * 16 15 13 45 45 H 1.09005 * 109.47173 * 299.99606 * 17 16 15 46 46 H 1.09002 * 109.47141 * 59.99761 * 17 16 15 47 47 H 1.09005 * 109.46839 * 300.00126 * 18 17 16 48 48 H 1.09002 * 109.46856 * 59.99903 * 18 17 16 49 49 H 0.96999 * 119.99862 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.5064 3.8866 0.1333 8 6 3.9077 4.7996 -1.0295 9 6 5.4318 4.9329 -1.0656 10 6 6.0608 3.5564 -1.2930 11 6 5.6839 2.6294 -0.1332 12 1 6.1301 2.9991 0.7900 13 6 6.1871 1.2370 -0.4153 14 8 5.8319 0.6555 -1.4186 15 7 7.0319 0.6382 0.4474 16 6 7.5215 -0.7149 0.1729 17 6 8.4581 -1.1567 1.2991 18 6 8.9690 -2.5702 1.0128 19 6 9.8921 -3.0050 2.1218 20 1 10.0938 -2.3399 2.9484 21 6 10.4782 -4.2523 2.0818 22 7 10.2321 -5.0625 1.0754 23 14 11.6218 -4.7916 3.4568 24 1 10.8347 -5.4692 4.5182 25 1 12.6365 -5.7316 2.9166 26 1 12.3033 -3.6026 4.0287 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.7751 4.3588 1.0782 35 1 2.4310 3.7107 0.1055 36 1 3.4596 5.7835 -0.8909 37 1 3.5578 4.3694 -1.9679 38 1 5.7833 5.3406 -0.1178 39 1 5.7188 5.6018 -1.8770 40 1 7.1452 3.6555 -1.3420 41 1 5.6912 3.1371 -2.2289 42 1 7.3163 1.1035 1.2496 43 1 6.6770 -1.4015 0.1119 44 1 8.0632 -0.7205 -0.7729 45 1 9.3026 -0.4701 1.3597 46 1 7.9167 -1.1511 2.2452 47 1 8.1243 -3.2565 0.9525 48 1 9.5103 -2.5762 0.0667 49 1 10.6447 -5.9399 1.0471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171499710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:59 Heat of formation + Delta-G solvation = -121.838090 kcal Electronic energy + Delta-G solvation = -26544.273027 eV Core-core repulsion = 22890.247283 eV Total energy + Delta-G solvation = -3654.025744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99899 -39.78942 -38.43899 -36.90302 -35.37322 -35.16486 -33.89664 -33.23281 -32.23721 -29.07237 -28.70738 -26.50102 -25.27433 -24.29603 -23.13404 -22.34162 -21.56321 -21.41527 -19.87264 -18.65288 -18.45292 -17.52675 -17.32691 -16.80448 -16.57715 -16.47411 -16.25815 -15.53411 -15.35362 -15.11659 -15.06644 -14.75169 -14.56867 -14.26229 -14.02171 -13.83838 -13.79968 -13.65968 -13.32783 -12.85136 -12.74630 -12.66314 -12.58905 -12.49916 -12.39018 -12.15868 -11.99084 -11.72979 -11.71922 -11.68574 -11.61137 -11.56129 -11.26500 -10.67287 -10.58774 -10.54230 -10.02199 -9.65272 -8.21721 -6.34527 1.39222 1.41945 1.49289 1.53046 1.65960 2.21869 2.26957 2.41167 3.11350 3.50129 3.76177 3.82842 3.85996 3.95175 4.05974 4.07256 4.11552 4.15134 4.17004 4.25742 4.45504 4.50282 4.56231 4.63679 4.67165 4.72298 4.82653 4.84646 4.89237 4.89903 4.98886 5.06680 5.10996 5.14012 5.20592 5.22474 5.23063 5.40771 5.44500 5.45559 5.50810 5.56034 5.64948 5.79735 6.18401 6.35447 6.65723 6.82605 7.17689 7.35155 7.47918 8.90901 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.002841 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.756691 B = 9853.398601 C =11090.963789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.122 4.122 4 C 0.487 3.513 5 O -0.557 6.557 6 N -0.606 5.606 7 C 0.102 3.898 8 C -0.135 4.135 9 C -0.112 4.112 10 C -0.120 4.120 11 C 0.131 3.869 12 H 0.115 0.885 13 C 0.523 3.477 14 O -0.581 6.581 15 N -0.717 5.717 16 C 0.143 3.857 17 C -0.098 4.098 18 C 0.025 3.975 19 C -0.542 4.542 20 H 0.068 0.932 21 C -0.006 4.006 22 N -0.937 5.937 23 Si 0.973 3.027 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.258 1.258 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.409 0.591 43 H 0.029 0.971 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.062 0.938 47 H -0.015 1.015 48 H -0.009 1.009 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.068 28.238 0.072 34.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.161 4.161 4 C 0.277 3.723 5 O -0.435 6.435 6 N -0.342 5.342 7 C -0.018 4.018 8 C -0.173 4.173 9 C -0.149 4.149 10 C -0.158 4.158 11 C 0.024 3.976 12 H 0.132 0.868 13 C 0.312 3.688 14 O -0.461 6.461 15 N -0.370 5.370 16 C 0.018 3.982 17 C -0.135 4.135 18 C -0.012 4.012 19 C -0.580 4.580 20 H 0.086 0.914 21 C -0.203 4.203 22 N -0.577 5.577 23 Si 0.796 3.204 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.182 1.182 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.245 0.755 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.003 0.997 48 H 0.010 0.990 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.978 27.107 -0.709 33.098 hybrid contribution 1.001 -1.197 0.377 1.605 sum -17.978 25.910 -0.333 31.538 Atomic orbital electron populations 1.21724 0.92877 1.02282 1.03113 1.21262 0.97316 0.95417 1.01107 1.21725 0.88366 0.99547 1.06467 1.21753 0.92360 0.83013 0.75183 1.90820 1.69724 1.33013 1.49898 1.48225 1.04974 1.07691 1.73338 1.22183 0.98052 0.81448 1.00151 1.21967 0.96108 1.01054 0.98178 1.21524 0.95471 0.94032 1.03905 1.21837 1.01923 0.96126 0.95950 1.21205 0.82710 0.91740 1.01896 0.86761 1.20644 0.77167 0.88168 0.82850 1.90636 1.58040 1.66641 1.30762 1.45807 1.48600 1.16651 1.25929 1.20997 0.95956 0.82945 0.98258 1.21572 0.97654 0.97688 0.96622 1.18928 0.94569 0.91878 0.95861 1.21662 1.27617 1.00972 1.07735 0.91372 1.26107 0.98671 0.96780 0.98773 1.70138 1.45469 1.09190 1.32932 0.85334 0.78122 0.78438 0.78458 1.19779 1.20810 1.18158 0.91396 0.92916 0.90809 0.94554 0.93567 0.85571 0.86789 0.88641 0.87100 0.87324 0.92714 0.89486 0.90116 0.89975 0.93357 0.75488 0.95223 0.93882 0.90917 0.91956 0.99691 0.99026 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.11 -2.44 5.22 30.59 0.16 -2.28 16 3 C -0.12 -2.01 4.06 29.85 0.12 -1.88 16 4 C 0.49 12.90 7.39 87.66 0.65 13.55 16 5 O -0.56 -21.93 11.75 20.55 0.24 -21.69 16 6 N -0.61 -11.83 2.97 -799.17 -2.38 -14.20 16 7 C 0.10 0.82 6.34 86.36 0.55 1.37 16 8 C -0.14 -0.94 6.08 30.67 0.19 -0.76 16 9 C -0.11 -1.02 5.88 30.62 0.18 -0.84 16 10 C -0.12 -2.17 5.31 30.67 0.16 -2.01 16 11 C 0.13 2.90 3.31 44.23 0.15 3.05 16 12 H 0.11 1.82 7.92 -2.39 -0.02 1.80 16 13 C 0.52 18.22 4.39 87.66 0.38 18.60 16 14 O -0.58 -26.40 14.61 20.55 0.30 -26.10 16 15 N -0.72 -24.52 5.56 -463.07 -2.57 -27.09 16 16 C 0.14 6.13 5.67 86.38 0.49 6.62 16 17 C -0.10 -4.26 5.27 30.60 0.16 -4.10 16 18 C 0.03 1.44 4.97 29.85 0.15 1.58 16 19 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 20 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 21 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 22 N -0.94 -59.78 13.29 21.45 0.28 -59.50 16 23 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 1.02 8.10 -2.38 -0.02 1.00 16 31 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 32 H 0.13 1.16 7.69 -2.39 -0.02 1.14 16 33 H 0.11 1.36 7.94 -2.38 -0.02 1.34 16 34 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.11 0.42 5.94 -2.39 -0.01 0.40 16 36 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.18 7.94 -2.38 -0.02 1.16 16 42 H 0.41 10.83 8.32 -92.71 -0.77 10.06 16 43 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 46 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 47 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 48 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -88.39 387.55 2.79 -85.60 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.14 Total: 15.58 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 4.75 Total: 0.03 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -4.66 Total: -100.79 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: 0.54 Total: -47.78 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -88.39 2.79 -85.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.236 kcal (2) G-P(sol) polarization free energy of solvation -88.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds